Q97YK8 - SULSO - GREMLIN Contacts

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Q97YK8 - Repressor in ring oxydation complex/ phenylacetic acid degradation pathway related protein (PaaX)

UniProt:	Q97YK8	Sequences: MKIQSLFFTLYGDYIKDAGGTISSKSLIIILKEFGFSEGAIRAGLHRMKKAGLIVSERGKDKKIRYKLSEKGLLRLLEGTRRVYEKTRRRWDGKWRIVVYNIPENNREVRDRLRRELKWLGFGMLAQSTWISPNPIEDTLRKFINDLYNSTNSVKVDIFVADYLDQPNHLVERCWNLVEVEQAYKSFLEEWSPMLKKVNSMKSNEAFVTRIELVHEYRKFLNIDPDLPEDLLPQNWIGYKAYDLFMKLREELTPKANEFFYKVYEP	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	266 (254)
Sequences:	1163 (815)
Seq/√Len:	51.1

ECOLI - PAAX
SULSO - Q97YK8 Q97WU2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
203_S	258_E	4.859	1.00
181_E	237_I	4.474	1.00
184_Y	241_A	3.989	1.00
110_R	114_R	3.536	1.00
13_D	210_R	3.411	1.00
104_E	107_R	3.153	1.00
176_N	179_E	3.150	1.00
232_L	238_G	3.125	1.00
21_T	57_E	3.004	1.00
55_V	67_K	2.896	1.00
45_L	54_I	2.891	1.00
96_R	158_I	2.754	1.00
95_W	133_P	2.732	1.00
232_L	236_W	2.633	1.00
32_K	38_E	2.545	1.00
23_S	63_K	2.426	1.00
192_S	240_K	2.380	1.00
97_I	161_A	2.336	1.00
24_S	45_L	2.243	1.00
97_I	129_T	2.231	1.00
166_Q	169_H	2.225	1.00
91_W	230_D	2.220	1.00
25_K	63_K	2.141	1.00
23_S	26_S	2.069	1.00
181_E	185_K	2.020	1.00
7_F	41_I	2.014	1.00
6_L	36_F	1.993	1.00
94_K	162_D	1.986	1.00
243_D	247_K	1.981	1.00
194_M	209_T	1.957	1.00
30_I	207_F	1.929	0.99
100_Y	128_S	1.894	0.99
99_V	129_T	1.837	0.99
110_R	113_L	1.806	0.99
13_D	249_R	1.783	0.99
215_H	218_R	1.775	0.99
106_N	109_V	1.762	0.99
4_Q	231_L	1.754	0.99
98_V	158_I	1.741	0.99
145_N	153_S	1.719	0.99
184_Y	224_D	1.718	0.99
49_K	54_I	1.692	0.99
18_A	261_Y	1.689	0.99
255_K	258_E	1.686	0.98
239_Y	243_D	1.673	0.98
28_I	120_L	1.659	0.98
75_R	221_L	1.628	0.98
116_E	147_L	1.614	0.98
91_W	94_K	1.582	0.98
183_A	223_I	1.581	0.98
8_F	48_M	1.539	0.97
157_D	173_R	1.509	0.97
185_K	240_K	1.494	0.97
102_I	149_N	1.472	0.96
208_V	212_E	1.463	0.96
198_V	201_M	1.463	0.96
104_E	111_D	1.437	0.96
96_R	122_F	1.423	0.96
103_P	107_R	1.416	0.96
224_D	232_L	1.410	0.95
91_W	231_L	1.396	0.95
207_F	259_F	1.386	0.95
21_T	67_K	1.377	0.95
182_Q	186_S	1.368	0.95
73_L	77_L	1.357	0.94
140_L	183_A	1.347	0.94
76_L	79_G	1.334	0.94
140_L	144_I	1.300	0.93
53_L	215_H	1.300	0.93
133_P	236_W	1.284	0.92
31_L	242_Y	1.281	0.92
177_L	233_P	1.276	0.92
192_S	195_L	1.268	0.92
172_E	234_Q	1.266	0.92
185_K	235_N	1.227	0.91
214_V	245_F	1.224	0.91
45_L	56_S	1.215	0.90
90_R	230_D	1.214	0.90
115_R	161_A	1.207	0.90
162_D	203_S	1.206	0.90
97_I	131_I	1.204	0.90
183_A	230_D	1.200	0.90
107_R	245_F	1.194	0.89
100_Y	103_P	1.189	0.89
229_E	239_Y	1.186	0.89
110_R	123_G	1.162	0.88
67_K	129_T	1.161	0.88
7_F	175_W	1.154	0.88
53_L	75_R	1.154	0.88
185_K	237_I	1.149	0.88
24_S	62_K	1.144	0.87
140_L	149_N	1.140	0.87
19_G	105_N	1.140	0.87
13_D	64_I	1.127	0.87
202_K	205_E	1.115	0.86
11_Y	157_D	1.112	0.86
113_L	156_V	1.111	0.86
82_R	121_G	1.107	0.86
175_W	224_D	1.086	0.84
31_L	41_I	1.083	0.84
210_R	257_N	1.071	0.84
178_V	188_L	1.056	0.83
253_T	256_A	1.051	0.82
20_G	41_I	1.051	0.82
98_V	156_V	1.046	0.82
25_K	65_R	1.031	0.81
179_E	182_Q	1.026	0.81
144_I	156_V	1.026	0.81
117_L	122_F	1.025	0.81
107_R	131_I	1.023	0.81
182_Q	202_K	1.014	0.80
100_Y	104_E	1.002	0.79
3_I	53_L	1.000	0.79
34_F	208_V	0.995	0.79
11_Y	41_I	0.995	0.79
162_D	179_E	0.989	0.78
80_T	83_V	0.978	0.78
196_K	206_A	0.971	0.77
239_Y	247_K	0.968	0.77
36_F	41_I	0.967	0.77
254_P	258_E	0.966	0.77
214_V	222_N	0.965	0.77
190_E	216_E	0.964	0.77
49_K	174_C	0.962	0.76
153_S	240_K	0.959	0.76
10_L	211_I	0.957	0.76
125_L	174_C	0.956	0.76
3_I	43_A	0.954	0.76
122_F	140_L	0.951	0.76
192_S	244_L	0.949	0.75
138_D	182_Q	0.946	0.75
33_E	204_N	0.943	0.75
195_L	247_K	0.941	0.75
185_K	188_L	0.936	0.74
257_N	261_Y	0.935	0.74
110_R	130_W	0.934	0.74
218_R	222_N	0.933	0.74
95_W	236_W	0.924	0.73
168_N	171_V	0.920	0.73
13_D	43_A	0.916	0.73
244_L	248_L	0.916	0.73
182_Q	185_K	0.914	0.73
79_G	215_H	0.910	0.72
115_R	199_N	0.908	0.72
122_F	132_S	0.903	0.72
178_V	182_Q	0.903	0.72
247_K	251_E	0.900	0.71
28_I	211_I	0.895	0.71
88_R	138_D	0.895	0.71
182_Q	200_S	0.893	0.71
39_G	46_H	0.886	0.70
45_L	181_E	0.879	0.70
218_R	245_F	0.877	0.69
177_L	238_G	0.874	0.69
230_D	243_D	0.874	0.69
161_A	165_D	0.874	0.69
53_L	222_N	0.873	0.69
214_V	249_R	0.873	0.69
199_N	247_K	0.872	0.69
25_K	117_L	0.872	0.69
201_M	206_A	0.868	0.69
99_V	126_A	0.868	0.69
84_Y	218_R	0.866	0.68
142_K	178_V	0.865	0.68
186_S	200_S	0.859	0.68
76_L	130_W	0.852	0.67
78_E	128_S	0.850	0.67
97_I	144_I	0.850	0.67
9_T	215_H	0.847	0.67
11_Y	20_G	0.846	0.67
248_L	252_L	0.845	0.67
243_D	254_P	0.844	0.66
8_F	11_Y	0.843	0.66
132_S	135_P	0.837	0.66
154_V	178_V	0.837	0.66
222_N	238_G	0.836	0.66
182_Q	254_P	0.831	0.65
104_E	110_R	0.827	0.65
172_E	216_E	0.826	0.65
168_N	247_K	0.822	0.64
133_P	224_D	0.819	0.64
193_P	206_A	0.816	0.64
240_K	244_L	0.806	0.63
210_R	214_V	0.800	0.62
24_S	66_Y	0.800	0.62
132_S	136_I	0.799	0.62
204_N	208_V	0.799	0.62
27_L	61_D	0.798	0.62
214_V	218_R	0.796	0.62
5_S	170_L	0.795	0.62
70_E	192_S	0.792	0.62
21_T	65_R	0.784	0.61
44_G	218_R	0.784	0.61
26_S	29_I	0.780	0.60
186_S	190_E	0.778	0.60
43_A	249_R	0.777	0.60
104_E	114_R	0.776	0.60
66_Y	206_A	0.772	0.60
70_E	202_K	0.772	0.60
100_Y	114_R	0.764	0.59
201_M	255_K	0.761	0.58
122_F	136_I	0.757	0.58
79_G	249_R	0.755	0.58
23_S	191_W	0.755	0.58
78_E	167_P	0.752	0.58
142_K	162_D	0.748	0.57
105_N	138_D	0.745	0.57
173_R	194_M	0.744	0.57
103_P	106_N	0.742	0.57
102_I	109_V	0.742	0.57
16_K	27_L	0.740	0.56
33_E	259_F	0.738	0.56
153_S	156_V	0.733	0.56
57_E	67_K	0.733	0.56
112_R	169_H	0.729	0.55
29_I	33_E	0.725	0.55
70_E	258_E	0.724	0.55
10_L	261_Y	0.720	0.54
37_S	125_L	0.720	0.54
43_A	79_G	0.718	0.54
100_Y	111_D	0.717	0.54
13_D	91_W	0.716	0.54
185_K	189_E	0.713	0.54
72_G	260_F	0.712	0.53
186_S	216_E	0.711	0.53
92_D	119_W	0.709	0.53
5_S	84_Y	0.704	0.53
114_R	232_L	0.703	0.53
233_P	236_W	0.698	0.52
222_N	245_F	0.698	0.52
200_S	203_S	0.697	0.52
69_S	72_G	0.697	0.52
210_R	249_R	0.696	0.52
240_K	254_P	0.695	0.52
75_R	79_G	0.691	0.51
217_Y	241_A	0.691	0.51
55_V	202_K	0.691	0.51
195_L	199_N	0.690	0.51
100_Y	115_R	0.689	0.51
109_V	200_S	0.686	0.51
46_H	252_L	0.686	0.51
95_W	117_L	0.685	0.51
101_N	159_F	0.682	0.50
138_D	189_E	0.682	0.50
35_G	116_E	0.681	0.50
102_I	107_R	0.681	0.50
70_E	74_L	0.678	0.50
251_E	255_K	0.678	0.50
177_L	212_E	0.678	0.50
133_P	175_W	0.674	0.50
40_A	82_R	0.674	0.50
102_I	115_R	0.669	0.49
204_N	259_F	0.667	0.49
4_Q	10_L	0.666	0.49
5_S	22_I	0.662	0.48
14_Y	245_F	0.662	0.48
31_L	226_D	0.659	0.48
121_G	175_W	0.657	0.48
186_S	243_D	0.655	0.48
83_V	97_I	0.655	0.48
172_E	176_N	0.654	0.47
159_F	167_P	0.652	0.47
83_V	123_G	0.646	0.47
176_N	187_F	0.644	0.46
121_G	184_Y	0.643	0.46
187_F	241_A	0.642	0.46
98_V	106_N	0.641	0.46
189_E	250_E	0.641	0.46
98_V	124_M	0.640	0.46
209_T	230_D	0.639	0.46
188_L	240_K	0.635	0.45
64_I	222_N	0.631	0.45
46_H	120_L	0.630	0.45
149_N	186_S	0.626	0.45
83_V	218_R	0.625	0.44
131_I	149_N	0.623	0.44
29_I	182_Q	0.623	0.44
103_P	123_G	0.621	0.44
72_G	116_E	0.619	0.44
180_V	237_I	0.617	0.44
179_E	183_A	0.617	0.44
61_D	93_G	0.616	0.44
191_W	207_F	0.615	0.43
19_G	38_E	0.614	0.43
107_R	121_G	0.613	0.43
66_Y	252_L	0.613	0.43
89_R	182_Q	0.610	0.43
144_I	234_Q	0.609	0.43
114_R	119_W	0.607	0.43
75_R	78_E	0.606	0.43
11_Y	31_L	0.605	0.42
11_Y	15_I	0.605	0.42
57_E	243_D	0.605	0.42
4_Q	40_A	0.605	0.42
70_E	138_D	0.604	0.42
93_G	170_L	0.604	0.42
58_R	61_D	0.603	0.42
248_L	251_E	0.603	0.42
99_V	231_L	0.601	0.42
217_Y	249_R	0.601	0.42
81_R	85_E	0.600	0.42
10_L	207_F	0.597	0.42
11_Y	24_S	0.597	0.42
13_D	214_V	0.596	0.42
100_Y	215_H	0.596	0.42
165_D	234_Q	0.593	0.41
161_A	196_K	0.591	0.41
128_S	181_E	0.591	0.41
117_L	187_F	0.590	0.41
45_L	68_L	0.589	0.41
159_F	163_Y	0.588	0.41
168_N	172_E	0.588	0.41
180_V	220_F	0.587	0.41
55_V	258_E	0.586	0.41
162_D	258_E	0.585	0.40
58_R	62_K	0.585	0.40
52_G	252_L	0.584	0.40
88_R	211_I	0.583	0.40
215_H	222_N	0.583	0.40
173_R	183_A	0.581	0.40
70_E	230_D	0.580	0.40
131_I	257_N	0.578	0.40
54_I	243_D	0.575	0.39
48_M	218_R	0.572	0.39
90_R	145_N	0.571	0.39
187_F	191_W	0.569	0.39
75_R	116_E	0.568	0.39
142_K	146_D	0.568	0.39
111_D	114_R	0.568	0.39
84_Y	238_G	0.567	0.39
43_A	210_R	0.567	0.39
67_K	239_Y	0.564	0.38
8_F	231_L	0.563	0.38
169_H	216_E	0.562	0.38
16_K	80_T	0.561	0.38
79_G	221_L	0.561	0.38
61_D	92_D	0.560	0.38
192_S	234_Q	0.560	0.38
22_I	181_E	0.557	0.38
4_Q	8_F	0.557	0.38
43_A	214_V	0.557	0.38
3_I	11_Y	0.554	0.37
3_I	6_L	0.554	0.37
27_L	58_R	0.552	0.37
27_L	42_R	0.550	0.37
168_N	189_E	0.549	0.37
28_I	119_W	0.548	0.37
114_R	123_G	0.547	0.37
140_L	148_Y	0.546	0.37
45_L	116_E	0.545	0.36
177_L	232_L	0.544	0.36
123_G	132_S	0.544	0.36
16_K	84_Y	0.544	0.36
97_I	198_V	0.544	0.36
32_K	142_K	0.542	0.36
10_L	21_T	0.539	0.36
193_P	244_L	0.538	0.36
161_A	178_V	0.537	0.36
30_I	33_E	0.537	0.36
3_I	37_S	0.537	0.36
108_E	154_V	0.537	0.36
8_F	215_H	0.534	0.35
179_E	247_K	0.532	0.35
43_A	64_I	0.532	0.35
34_F	220_F	0.531	0.35
18_A	215_H	0.531	0.35
247_K	250_E	0.529	0.35
116_E	201_M	0.529	0.35
172_E	202_K	0.525	0.35
73_L	117_L	0.525	0.35
109_V	168_N	0.521	0.34
92_D	230_D	0.519	0.34
188_L	244_L	0.516	0.34
37_S	40_A	0.514	0.34
74_L	145_N	0.512	0.33
39_G	43_A	0.511	0.33
211_I	249_R	0.508	0.33
124_M	189_E	0.503	0.33
40_A	234_Q	0.502	0.32
131_I	226_D	0.501	0.32
83_V	217_Y	0.500	0.32

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3kfwX	4	0.8722	100	0.221	Contact Map
3l09A	4	0.8722	100	0.307	Contact Map
2co5A	2	0.3158	97.4	0.887	Contact Map
3f6vA	2	0.3271	97.1	0.893	Contact Map
4k2eA	2	0.2857	97	0.894	Contact Map
3cuoA	2	0.2857	97	0.894	Contact Map
1yg2A	2	0.6128	97	0.895	Contact Map
2qvoA	2	0.3008	96.9	0.896	Contact Map
1hsjA	2	0.3083	96.8	0.897	Contact Map
3l7wA	2	0.3534	96.6	0.899	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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