Q97YH8 - SULSO - GREMLIN Contacts

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Q97YH8 - Uncharacterized protein

UniProt:	Q97YH8	Sequences: MVSLFKIIQVGDHGEVPGAEVFWMKDFDKWYRLSFYSFLIKTENDQYVLINTGLPDDLSLRNKFLKEWAKSDRCKFQHVEKIENALAKLNITTDDISHIIITPVQDYTIGRIHMFRKAKLYFSKKGWYEDVVTPSPSPFLNRDIYLPRLTREYLFDEAWNRIVLVENQEVIKGIEVKWTGCHHRSSMLVKFNFDKKRWCISDSAFVMNNFEQNIPIGIAEDIYECLNAYDYMRRECDVVIPSYDPENVNRFKEYILK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	257 (206)
Sequences:	4976 (3752)
Seq/√Len:	261.4

BACSU - YTNP YFLN YOBT
HALSA - Q9HQ42 Q9HSH2
SULSO - Q97YH8 Q97Y13 Q97UR2 Q97XZ1 Q97YZ2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
179_T	188_L	5.547	1.00
41_K	47_Y	4.340	1.00
98_H	121_Y	3.525	1.00
124_K	128_Y	3.409	1.00
50_I	102_T	3.145	1.00
124_K	166_E	3.055	1.00
46_Q	97_S	2.860	1.00
119_K	163_V	2.838	1.00
46_Q	98_H	2.706	1.00
92_T	95_D	2.702	1.00
100_I	189_V	2.553	1.00
221_D	224_E	2.541	1.00
123_S	187_M	2.473	1.00
47_Y	91_I	2.394	1.00
179_T	186_S	2.317	1.00
186_S	201_S	2.230	1.00
47_Y	96_I	2.220	1.00
175_E	192_N	2.174	1.00
43_E	46_Q	2.097	1.00
176_V	189_V	1.959	1.00
101_I	112_I	1.952	1.00
41_K	91_I	1.932	1.00
87_A	92_T	1.909	1.00
48_V	98_H	1.882	1.00
224_E	227_N	1.873	1.00
50_I	189_V	1.865	1.00
174_I	191_F	1.813	1.00
190_K	197_R	1.808	1.00
177_K	190_K	1.800	1.00
47_Y	97_S	1.792	1.00
98_H	119_K	1.756	1.00
180_G	228_A	1.744	1.00
94_D	116_R	1.656	1.00
169_E	172_K	1.652	1.00
126_G	183_H	1.651	1.00
42_T	45_D	1.621	1.00
192_N	197_R	1.616	1.00
102_T	189_V	1.610	1.00
83_E	93_T	1.606	1.00
190_K	199_C	1.584	1.00
175_E	190_K	1.502	1.00
176_V	187_M	1.462	1.00
91_I	95_D	1.458	1.00
39_L	96_I	1.445	1.00
50_I	200_I	1.420	1.00
203_S	232_M	1.416	1.00
99_I	120_L	1.413	1.00
49_L	96_I	1.411	1.00
84_N	87_A	1.407	1.00
112_I	120_L	1.406	1.00
145_Y	149_L	1.405	1.00
94_D	117_K	1.389	1.00
127_W	131_V	1.386	1.00
147_P	151_R	1.352	1.00
193_F	196_K	1.316	1.00
188_L	199_C	1.312	1.00
190_K	235_E	1.312	1.00
227_N	231_Y	1.306	1.00
47_Y	95_D	1.306	1.00
102_T	201_S	1.270	1.00
48_V	174_I	1.258	1.00
230_D	234_R	1.251	1.00
236_C	239_V	1.224	1.00
227_N	230_D	1.211	1.00
86_L	91_I	1.202	1.00
148_R	151_R	1.200	1.00
40_I	50_I	1.198	1.00
38_F	240_I	1.188	1.00
39_L	91_I	1.186	1.00
83_E	114_M	1.184	1.00
150_T	153_Y	1.178	1.00
42_T	46_Q	1.167	1.00
127_W	164_L	1.163	1.00
165_V	187_M	1.163	1.00
177_K	188_L	1.163	1.00
129_E	184_R	1.147	1.00
104_V	122_F	1.147	1.00
199_C	237_D	1.132	1.00
135_S	138_P	1.115	1.00
39_L	49_L	1.114	1.00
38_F	200_I	1.105	1.00
188_L	203_S	1.104	1.00
152_E	155_F	1.080	1.00
146_L	149_L	1.077	1.00
196_K	238_V	1.074	1.00
96_I	115_F	1.070	1.00
99_I	112_I	1.053	1.00
169_E	173_G	1.051	1.00
229_Y	233_R	1.051	1.00
42_T	48_V	1.047	1.00
147_P	150_T	1.047	1.00
104_V	109_I	1.045	1.00
153_Y	156_D	1.039	1.00
85_A	88_K	1.036	1.00
20_E	23_W	1.031	1.00
219_A	222_I	1.031	1.00
96_I	118_A	1.026	1.00
126_G	185_S	1.026	1.00
80_E	88_K	1.025	1.00
123_S	167_N	1.023	1.00
121_Y	165_V	1.021	1.00
179_T	228_A	1.013	1.00
50_I	100_I	1.010	1.00
123_S	178_W	1.004	1.00
42_T	172_K	1.003	1.00
159_W	162_I	0.976	1.00
200_I	240_I	0.971	1.00
197_R	237_D	0.968	1.00
87_A	93_T	0.965	1.00
52_T	112_I	0.955	1.00
83_E	87_A	0.953	1.00
177_K	235_E	0.945	1.00
40_I	174_I	0.944	1.00
164_L	167_N	0.931	1.00
168_Q	178_W	0.922	1.00
145_Y	148_R	0.918	1.00
121_Y	163_V	0.917	1.00
133_T	136_P	0.911	1.00
113_H	116_R	0.910	1.00
55_P	111_R	0.910	1.00
226_L	230_D	0.909	1.00
204_A	241_P	0.908	1.00
141_N	144_I	0.891	1.00
206_V	209_N	0.887	1.00
81_K	84_N	0.886	1.00
144_I	147_P	0.878	1.00
49_L	52_T	0.872	1.00
111_R	114_M	0.870	1.00
203_S	228_A	0.857	1.00
126_G	130_D	0.855	1.00
141_N	145_Y	0.852	1.00
143_D	146_L	0.849	0.99
219_A	229_Y	0.847	0.99
104_V	130_D	0.846	0.99
213_N	230_D	0.846	0.99
125_K	128_Y	0.845	0.99
78_H	84_N	0.833	0.99
151_R	155_F	0.832	0.99
47_Y	86_L	0.830	0.99
49_L	86_L	0.830	0.99
225_C	229_Y	0.827	0.99
168_Q	175_E	0.822	0.99
38_F	198_W	0.821	0.99
142_R	146_L	0.820	0.99
142_R	145_Y	0.820	0.99
100_I	187_M	0.816	0.99
26_D	29_K	0.814	0.99
177_K	199_C	0.812	0.99
167_N	187_M	0.808	0.99
124_K	164_L	0.807	0.99
169_E	175_E	0.804	0.99
191_F	196_K	0.799	0.99
205_F	210_F	0.798	0.99
141_N	147_P	0.793	0.99
231_Y	235_E	0.791	0.99
215_P	226_L	0.787	0.99
40_I	48_V	0.781	0.99
223_Y	226_L	0.780	0.99
198_W	240_I	0.779	0.99
145_Y	151_R	0.775	0.99
149_L	153_Y	0.767	0.99
39_L	47_Y	0.766	0.99
128_Y	131_V	0.764	0.99
99_I	115_F	0.761	0.99
208_N	212_Q	0.755	0.99
144_I	149_L	0.752	0.99
180_G	224_E	0.748	0.99
93_T	114_M	0.747	0.99
145_Y	150_T	0.747	0.99
188_L	232_M	0.745	0.99
52_T	111_R	0.744	0.99
167_N	178_W	0.743	0.99
192_N	195_K	0.742	0.99
149_L	152_E	0.742	0.99
149_L	154_L	0.742	0.99
39_L	85_A	0.741	0.99
128_Y	133_T	0.734	0.99
145_Y	153_Y	0.733	0.99
142_R	149_L	0.733	0.99
222_I	226_L	0.731	0.98
198_W	238_V	0.729	0.98
105_Q	108_T	0.729	0.98
188_L	228_A	0.728	0.98
199_C	232_M	0.721	0.98
158_A	164_L	0.713	0.98
80_E	84_N	0.710	0.98
37_S	82_I	0.709	0.98
152_E	156_D	0.708	0.98
172_K	192_N	0.708	0.98
200_I	242_S	0.707	0.98
213_N	233_R	0.707	0.98
38_F	241_P	0.706	0.98
84_N	88_K	0.705	0.98
164_L	168_Q	0.702	0.98
122_F	127_W	0.702	0.98
48_V	100_I	0.697	0.98
219_A	225_C	0.691	0.98
146_L	150_T	0.691	0.98
133_T	137_S	0.687	0.98
141_N	146_L	0.685	0.98
231_Y	234_R	0.685	0.98
147_P	152_E	0.677	0.98
226_L	229_Y	0.677	0.98
150_T	154_L	0.676	0.97
143_D	149_L	0.673	0.97
168_Q	231_Y	0.673	0.97
160_N	165_V	0.671	0.97
162_I	165_V	0.671	0.97
230_D	233_R	0.671	0.97
100_I	174_I	0.669	0.97
160_N	164_L	0.669	0.97
50_I	201_S	0.662	0.97
90_N	95_D	0.661	0.97
209_N	225_C	0.658	0.97
142_R	147_P	0.658	0.97
86_L	89_L	0.654	0.97
52_T	99_I	0.654	0.97
165_V	168_Q	0.651	0.97
126_G	129_E	0.648	0.97
134_P	137_S	0.641	0.97
20_E	24_M	0.637	0.96
101_I	120_L	0.637	0.96
125_K	167_N	0.635	0.96
105_Q	241_P	0.630	0.96
23_W	26_D	0.619	0.96
104_V	126_G	0.619	0.96
101_I	109_I	0.615	0.96
38_F	242_S	0.614	0.96
48_V	171_I	0.614	0.96
154_L	157_E	0.612	0.96
153_Y	157_E	0.611	0.95
144_I	148_R	0.610	0.95
214_I	218_I	0.606	0.95
144_I	150_T	0.596	0.95
148_R	152_E	0.594	0.95
109_I	112_I	0.594	0.95
143_D	150_T	0.589	0.95
53_G	101_I	0.587	0.94
175_E	178_W	0.586	0.94
103_P	107_Y	0.585	0.94
56_D	84_N	0.585	0.94
145_Y	155_F	0.585	0.94
103_P	108_T	0.584	0.94
59_S	77_Q	0.582	0.94
223_Y	227_N	0.582	0.94
113_H	161_R	0.581	0.94
221_D	227_N	0.579	0.94
152_E	157_E	0.578	0.94
86_L	95_D	0.578	0.94
126_G	186_S	0.577	0.94
49_L	99_I	0.574	0.94
161_R	164_L	0.574	0.94
22_F	26_D	0.573	0.94
57_D	110_G	0.573	0.94
51_N	243_Y	0.573	0.94
177_K	231_Y	0.573	0.94
55_P	219_A	0.572	0.94
170_V	176_V	0.572	0.94
165_V	176_V	0.572	0.94
101_I	104_V	0.572	0.94
123_S	126_G	0.570	0.93
34_S	205_F	0.569	0.93
52_T	101_I	0.569	0.93
151_R	156_D	0.565	0.93
194_D	197_R	0.562	0.93
108_T	243_Y	0.558	0.93
79_V	84_N	0.557	0.93
54_L	58_L	0.555	0.93
119_K	161_R	0.553	0.92
143_D	147_P	0.552	0.92
174_I	189_V	0.552	0.92
35_F	54_L	0.550	0.92
241_P	244_D	0.550	0.92
125_K	166_E	0.548	0.92
204_A	232_M	0.547	0.92
107_Y	243_Y	0.544	0.92
162_I	168_Q	0.544	0.92
41_K	95_D	0.536	0.91
51_N	107_Y	0.535	0.91
232_M	236_C	0.535	0.91
39_L	89_L	0.532	0.91
161_R	165_V	0.528	0.91
224_E	228_A	0.528	0.91
148_R	153_Y	0.526	0.90
106_D	110_G	0.524	0.90
151_R	154_L	0.523	0.90
83_E	198_W	0.520	0.90
43_E	47_Y	0.520	0.90
190_K	237_D	0.519	0.90
21_V	24_M	0.516	0.90
46_Q	171_I	0.515	0.90
51_N	108_T	0.515	0.90
205_F	217_G	0.513	0.89
204_A	209_N	0.513	0.89
123_S	127_W	0.512	0.89
207_M	244_D	0.512	0.89
99_I	118_A	0.511	0.89
163_V	166_E	0.510	0.89
121_Y	176_V	0.510	0.89
181_C	186_S	0.510	0.89
216_I	219_A	0.509	0.89
37_S	242_S	0.509	0.89
199_C	236_C	0.506	0.89
146_L	153_Y	0.505	0.89
237_D	241_P	0.504	0.89
200_I	241_P	0.504	0.89
158_A	161_R	0.503	0.88
122_F	164_L	0.501	0.88
122_F	162_I	0.500	0.88

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3aj3A	2	0.9533	100	0.382	Contact Map
2r2dA	5	0.9767	100	0.385	Contact Map
3dhaA	1	0.93	100	0.417	Contact Map
4zo2A	2	0.9183	100	0.43	Contact Map
4le6A	4	0.7626	100	0.433	Contact Map
1p9eA	3	0.9183	100	0.449	Contact Map
3eshA	5	0.93	100	0.457	Contact Map
2zo4A	1	0.8288	100	0.523	Contact Map
3iogA	1	0.8171	99.9	0.538	Contact Map
2vw8A	2	0.8638	99.9	0.543	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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