Q97YH1 - SULSO - GREMLIN Contacts

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Q97YH1 - Uncharacterized protein

UniProt:	Q97YH1	Sequences: MTFSIVIYDPDEKAWGVGVASKFLAVGAFVPWLKPNVGAIATQALANLTYGINGLSLLEKGYSASDSIRILTESDPLREKRQIGIVDSKGNASAFTGRECYSYAGHIVGNNFTVQGNILAGEEVLEAMAKEAEGKGKIYEKILRALKAGESKGGDRRGKQSAAIIVVRAVERSEREIDPLVVGKYVDLRVDDSPDPLRDLERLLDLWVATFVEEEMVNVKDYEDQIRDALKRWGYSDLRTWVEINNFEGKYTGDKIGKSVLKILLSKG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	268 (210)
Sequences:	693 (493)
Seq/√Len:	34.0

HALSA - Q9HPY0
SULSO - Q97YH1 Q97X11

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
147_K	201_E	4.188	1.00
33_L	167_V	3.996	1.00
193_S	199_D	3.971	1.00
87_D	91_N	3.447	1.00
94_A	106_H	3.442	1.00
58_L	85_I	3.321	1.00
112_F	129_A	3.295	1.00
34_K	59_E	3.198	1.00
5_I	18_G	3.165	1.00
27_G	163_A	3.149	1.00
54_G	71_L	2.872	1.00
34_K	56_S	2.843	1.00
116_G	119_L	2.808	1.00
65_S	69_R	2.618	1.00
199_D	202_R	2.597	1.00
132_A	138_I	2.539	1.00
39_A	86_V	2.353	0.99
68_I	72_T	2.287	0.99
17_V	31_P	2.182	0.99
84_G	115_Q	2.091	0.99
16_G	142_I	2.068	0.98
84_G	113_T	2.065	0.98
96_T	104_A	2.027	0.98
195_D	198_R	2.025	0.98
47_N	75_D	1.949	0.98
29_F	46_A	1.870	0.97
165_I	187_D	1.821	0.96
193_S	202_R	1.771	0.96
79_E	98_R	1.769	0.96
92_A	108_V	1.757	0.96
126_E	130_K	1.736	0.95
31_P	163_A	1.726	0.95
7_I	138_I	1.722	0.95
27_G	31_P	1.711	0.95
14_A	139_Y	1.698	0.95
107_I	125_L	1.674	0.94
107_I	126_E	1.649	0.94
114_V	129_A	1.626	0.93
57_L	71_L	1.620	0.93
14_A	168_R	1.572	0.92
109_G	112_F	1.508	0.90
72_T	83_I	1.506	0.90
120_A	124_V	1.505	0.90
68_I	85_I	1.499	0.90
109_G	133_E	1.488	0.90
105_G	125_L	1.485	0.90
64_A	91_N	1.450	0.89
33_L	165_I	1.445	0.88
63_S	66_D	1.400	0.87
96_T	100_C	1.386	0.86
140_E	208_V	1.372	0.86
54_G	67_S	1.358	0.85
32_W	51_G	1.354	0.85
18_G	142_I	1.326	0.84
53_N	74_S	1.323	0.84
40_I	54_G	1.316	0.83
128_M	131_E	1.312	0.83
140_E	147_K	1.306	0.83
136_G	144_R	1.306	0.83
20_A	150_E	1.303	0.83
94_A	108_V	1.298	0.82
64_A	87_D	1.294	0.82
42_T	52_I	1.275	0.81
40_I	83_I	1.275	0.81
139_Y	186_V	1.259	0.80
7_I	132_A	1.253	0.80
70_I	73_E	1.249	0.80
150_E	159_K	1.243	0.80
129_A	133_E	1.241	0.79
112_F	133_E	1.240	0.79
23_F	46_A	1.223	0.78
62_Y	70_I	1.215	0.78
103_Y	121_G	1.192	0.77
68_I	83_I	1.181	0.76
50_Y	72_T	1.172	0.75
66_D	69_R	1.162	0.75
204_L	208_V	1.153	0.74
160_Q	192_D	1.143	0.73
130_K	133_E	1.142	0.73
19_V	30_V	1.140	0.73
94_A	113_T	1.134	0.73
17_V	41_A	1.130	0.73
53_N	56_S	1.113	0.71
8_Y	111_N	1.104	0.71
5_I	128_M	1.102	0.71
84_G	94_A	1.098	0.70
127_A	130_K	1.098	0.70
54_G	85_I	1.079	0.69
140_E	201_E	1.072	0.69
54_G	57_L	1.068	0.68
8_Y	15_W	1.044	0.66
21_S	183_G	1.040	0.66
34_K	37_V	1.040	0.66
87_D	92_A	1.035	0.66
70_I	74_S	1.034	0.66
67_S	71_L	1.030	0.65
44_A	100_C	1.017	0.64
22_K	160_Q	1.012	0.64
57_L	62_Y	1.005	0.63
128_M	149_G	1.003	0.63
146_L	166_V	0.998	0.63
58_L	67_S	0.993	0.62
101_Y	118_I	0.981	0.62
159_K	195_D	0.961	0.60
10_P	111_N	0.957	0.60
166_V	190_V	0.954	0.59
29_F	48_L	0.953	0.59
56_S	60_K	0.945	0.59
109_G	190_V	0.938	0.58
11_D	136_G	0.931	0.57
47_N	54_G	0.927	0.57
62_Y	66_D	0.922	0.57
33_L	41_A	0.914	0.56
33_L	39_A	0.906	0.55
15_W	39_A	0.904	0.55
24_L	32_W	0.901	0.55
9_D	184_K	0.898	0.55
24_L	206_L	0.894	0.54
202_R	206_L	0.885	0.54
7_I	122_E	0.880	0.53
66_D	70_I	0.879	0.53
139_Y	164_I	0.879	0.53
184_K	204_L	0.879	0.53
20_A	149_G	0.876	0.53
3_F	128_M	0.875	0.53
6_V	86_V	0.875	0.53
24_L	203_L	0.867	0.52
192_D	202_R	0.866	0.52
57_L	60_K	0.865	0.52
47_N	71_L	0.862	0.52
7_I	42_T	0.861	0.52
23_F	192_D	0.849	0.51
130_K	134_G	0.844	0.50
122_E	126_E	0.844	0.50
24_L	188_L	0.836	0.49
185_Y	211_F	0.836	0.49
8_Y	12_E	0.835	0.49
106_H	149_G	0.829	0.49
20_A	159_K	0.821	0.48
32_W	42_T	0.816	0.48
10_P	110_N	0.812	0.47
107_I	129_A	0.809	0.47
8_Y	64_A	0.807	0.47
5_I	114_V	0.805	0.47
17_V	39_A	0.804	0.47
57_L	70_I	0.802	0.47
116_G	125_L	0.798	0.46
100_C	149_G	0.795	0.46
28_A	48_L	0.794	0.46
44_A	101_Y	0.793	0.46
72_T	78_R	0.792	0.46
72_T	75_D	0.787	0.45
18_G	145_A	0.786	0.45
44_A	80_K	0.786	0.45
26_V	163_A	0.783	0.45
14_A	138_I	0.780	0.45
143_L	164_I	0.775	0.44
3_F	150_E	0.774	0.44
9_D	218_N	0.772	0.44
100_C	104_A	0.770	0.44
37_V	55_L	0.767	0.44
131_E	148_A	0.763	0.43
58_L	78_R	0.760	0.43
15_W	167_V	0.753	0.43
114_V	128_M	0.749	0.42
121_G	151_S	0.749	0.42
168_R	185_Y	0.745	0.42
166_V	200_L	0.743	0.42
6_V	39_A	0.740	0.41
147_K	195_D	0.739	0.41
37_V	59_E	0.727	0.40
162_A	200_L	0.721	0.40
45_L	100_C	0.717	0.40
26_V	161_S	0.714	0.39
190_V	203_L	0.713	0.39
44_A	155_D	0.712	0.39
63_S	91_N	0.711	0.39
44_A	157_R	0.710	0.39
5_I	138_I	0.706	0.39
147_K	198_R	0.702	0.38
12_E	140_E	0.701	0.38
9_D	132_A	0.699	0.38
22_K	155_D	0.697	0.38
5_I	145_A	0.695	0.38
84_G	104_A	0.693	0.38
110_N	133_E	0.691	0.37
190_V	199_D	0.691	0.37
56_S	137_K	0.690	0.37
59_E	122_E	0.687	0.37
9_D	138_I	0.686	0.37
6_V	84_G	0.681	0.37
214_E	218_N	0.680	0.37
3_F	197_L	0.680	0.37
79_E	99_E	0.680	0.37
23_F	209_A	0.675	0.36
150_E	197_L	0.672	0.36
16_G	136_G	0.670	0.36
147_K	197_L	0.667	0.36
30_V	41_A	0.666	0.36
132_A	136_G	0.661	0.35
114_V	132_A	0.656	0.35
214_E	217_V	0.654	0.35
171_E	184_K	0.652	0.34
64_A	67_S	0.648	0.34
155_D	158_G	0.648	0.34
9_D	204_L	0.647	0.34
3_F	125_L	0.646	0.34
44_A	160_Q	0.645	0.34
213_E	217_V	0.644	0.34
67_S	85_I	0.641	0.34
49_T	52_I	0.641	0.34
121_G	124_V	0.639	0.33
3_F	116_G	0.635	0.33
66_D	110_N	0.630	0.33
75_D	199_D	0.629	0.33
45_L	76_P	0.627	0.33
12_E	15_W	0.623	0.32
22_K	46_A	0.622	0.32
15_W	64_A	0.622	0.32
100_C	106_H	0.622	0.32
60_K	195_D	0.619	0.32
186_V	207_W	0.617	0.32
28_A	196_P	0.617	0.32
216_M	219_V	0.615	0.32
38_G	55_L	0.614	0.32
6_V	41_A	0.614	0.32
22_K	29_F	0.609	0.31
54_G	58_L	0.608	0.31
108_V	195_D	0.607	0.31
40_I	67_S	0.605	0.31
49_T	78_R	0.605	0.31
89_K	111_N	0.603	0.31
143_L	204_L	0.602	0.31
155_D	159_K	0.602	0.31
21_S	210_T	0.602	0.31
103_Y	156_R	0.601	0.31
107_I	114_V	0.601	0.31
201_E	205_D	0.599	0.31
60_K	198_R	0.596	0.30
190_V	200_L	0.592	0.30
96_T	103_Y	0.589	0.30
121_G	126_E	0.588	0.30
71_L	78_R	0.587	0.30
67_S	72_T	0.586	0.30
21_S	192_D	0.585	0.30
47_N	193_S	0.581	0.29
127_A	198_R	0.581	0.29
9_D	211_F	0.581	0.29
21_S	163_A	0.580	0.29
22_K	209_A	0.578	0.29
24_L	207_W	0.574	0.29
136_G	171_E	0.571	0.29
157_R	160_Q	0.568	0.28
91_N	151_S	0.568	0.28
46_A	50_Y	0.567	0.28
192_D	199_D	0.566	0.28
108_V	146_L	0.566	0.28
40_I	51_G	0.566	0.28
17_V	32_W	0.565	0.28
144_R	147_K	0.561	0.28
30_V	128_M	0.559	0.28
46_A	183_G	0.558	0.28
17_V	28_A	0.558	0.28
187_D	190_V	0.557	0.28
17_V	86_V	0.550	0.27
209_A	214_E	0.549	0.27
212_V	215_E	0.548	0.27
127_A	131_E	0.547	0.27
56_S	98_R	0.547	0.27
20_A	30_V	0.545	0.27
206_L	210_T	0.542	0.27
49_T	53_N	0.541	0.27
5_I	89_K	0.541	0.27
100_C	155_D	0.540	0.26
41_A	115_Q	0.540	0.26
54_G	68_I	0.539	0.26
86_V	132_A	0.539	0.26
140_E	166_V	0.539	0.26
106_H	113_T	0.533	0.26
40_I	98_R	0.533	0.26
3_F	95_F	0.531	0.26
188_L	203_L	0.530	0.26
130_K	194_P	0.530	0.26
44_A	192_D	0.528	0.26
69_R	73_E	0.528	0.26
71_L	75_D	0.526	0.26
155_D	209_A	0.526	0.26
217_V	221_D	0.525	0.25
143_L	147_K	0.525	0.25
21_S	168_R	0.525	0.25
9_D	186_V	0.523	0.25
7_I	128_M	0.523	0.25
135_K	198_R	0.522	0.25
64_A	93_S	0.521	0.25
105_G	122_E	0.520	0.25
92_A	140_E	0.518	0.25
29_F	155_D	0.516	0.25
120_A	150_E	0.516	0.25
25_A	191_D	0.516	0.25
45_L	101_Y	0.515	0.25
74_S	78_R	0.512	0.25
197_L	201_E	0.510	0.25
3_F	115_Q	0.508	0.24
59_E	195_D	0.508	0.24
113_T	133_E	0.507	0.24
19_V	160_Q	0.507	0.24
3_F	20_A	0.506	0.24
89_K	130_K	0.506	0.24
15_W	24_L	0.505	0.24
15_W	88_S	0.504	0.24
11_D	59_E	0.503	0.24
80_K	101_Y	0.503	0.24
123_E	127_A	0.503	0.24
213_E	216_M	0.503	0.24
78_R	95_F	0.500	0.24

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2imhA	2	0.8209	100	0.223	Contact Map
2gezB	2	0.4179	76	0.954	Contact Map
4pv2B	2	0.4179	71.7	0.955	Contact Map
1p4kA	2	0.4403	63.4	0.958	Contact Map
1k2xB	2	0.4291	49.4	0.961	Contact Map
1apyB	2	0.4552	39.1	0.963	Contact Map
3c17A	2	0.4366	38.5	0.964	Contact Map
4o0cA	2	0.459	29.2	0.966	Contact Map
2jugA	2	0.1828	9.2	0.973	Contact Map
4xx6A	2	0.2687	9.1	0.973	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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