GREMLIN Database
Q97YG9 - Transcriptional regulator, marR family, putative
UniProt: Q97YG9 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 144 (129)
Sequences: 20990 (15436)
Seq/√Len: 1359.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
50_P95_E3.2381.00
83_I95_E3.1611.00
124_N134_K3.0661.00
81_R95_E2.5801.00
85_D93_I2.5771.00
52_S91_I2.5411.00
127_E130_E2.2731.00
127_E131_G2.1861.00
47_S104_L2.1571.00
84_R92_V2.0381.00
52_S55_Y2.0081.00
39_D77_K1.8871.00
85_D91_I1.8311.00
124_N127_E1.8181.00
50_P93_I1.8061.00
121_D138_R1.7721.00
47_S96_I1.6701.00
122_V131_G1.6401.00
99_K103_V1.6211.00
53_M71_V1.6211.00
50_P83_I1.5711.00
78_G99_K1.5701.00
71_V94_V1.5571.00
36_S39_D1.5501.00
39_D73_K1.5491.00
124_N130_E1.5021.00
42_I70_A1.5011.00
72_D76_A1.4981.00
99_K102_Q1.4741.00
128_L131_G1.4711.00
131_G134_K1.4581.00
13_T133_N1.4381.00
32_L110_V1.4331.00
103_V106_E1.4221.00
75_E82_R1.3881.00
47_S101_R1.3531.00
72_D89_R1.3301.00
45_A59_R1.3181.00
17_I136_L1.3061.00
28_R110_V1.2751.00
13_T136_L1.2471.00
13_T129_L1.2411.00
55_Y58_N1.2371.00
54_V64_Q1.2091.00
102_Q106_E1.1961.00
62_V66_A1.1931.00
130_E134_K1.1741.00
63_T66_A1.1621.00
53_M92_V1.1591.00
32_L106_E1.1541.00
53_M94_V1.1231.00
54_V58_N1.1171.00
26_N30_G1.1061.00
123_E127_E1.0941.00
42_I67_I1.0921.00
49_E101_R1.0711.00
28_R117_E1.0631.00
53_M67_I1.0591.00
125_V129_L1.0571.00
16_K136_L1.0491.00
79_L103_V1.0431.00
129_L133_N1.0421.00
51_R59_R1.0371.00
51_R55_Y1.0331.00
110_V113_N1.0031.00
34_N77_K1.0031.00
77_K99_K1.0011.00
72_D75_E0.9991.00
77_K103_V0.9961.00
98_P101_R0.9911.00
124_N131_G0.9911.00
96_I100_G0.9891.00
68_T72_D0.9681.00
62_V67_I0.9681.00
17_I132_L0.9371.00
101_R105_L0.9361.00
65_S68_T0.9251.00
71_V80_V0.9101.00
66_A69_A0.9091.00
82_R92_V0.9031.00
84_R89_R0.9011.00
69_A73_K0.9001.00
98_P102_Q0.8931.00
28_R113_N0.8871.00
53_M64_Q0.8861.00
115_V118_M0.8861.00
127_E134_K0.8831.00
47_S105_L0.8771.00
15_A18_Y0.8751.00
55_Y59_R0.8751.00
46_T80_V0.8741.00
38_L70_A0.8701.00
49_E95_E0.8691.00
63_T69_A0.8691.00
43_L104_L0.8691.00
81_R97_T0.8631.00
111_L115_V0.8631.00
18_Y22_I0.8621.00
86_S93_I0.8581.00
83_I93_I0.8551.00
109_E113_N0.8491.00
10_L129_L0.8411.00
75_E81_R0.8371.00
28_R114_L0.8351.00
20_G136_L0.8291.00
71_V75_E0.8271.00
40_F107_A0.8251.00
79_L99_K0.8181.00
88_D91_I0.8071.00
113_N116_N0.7891.00
19_R23_K0.7881.00
14_I18_Y0.7871.00
41_S60_Y0.7741.00
96_I101_R0.7731.00
114_L117_E0.7621.00
42_I56_L0.7611.00
113_N117_E0.7601.00
126_E129_L0.7581.00
47_S108_N0.7571.00
126_E130_E0.7561.00
85_D88_D0.7521.00
45_A60_Y0.7501.00
42_I60_Y0.7461.00
122_V135_I0.7401.00
69_A72_D0.7291.00
106_E110_V0.7231.00
123_E126_E0.7111.00
45_A51_R0.7111.00
31_K110_V0.7101.00
38_L66_A0.7041.00
39_D70_A0.7041.00
109_E112_R0.7041.00
26_N37_Y0.7021.00
53_M68_T0.6981.00
46_T51_R0.6961.00
75_E80_V0.6951.00
117_E120_S0.6941.00
102_Q105_L0.6931.00
45_A56_L0.6921.00
24_E117_E0.6861.00
40_F111_L0.6811.00
73_K76_A0.6781.00
112_R116_N0.6741.00
24_E114_L0.6671.00
133_N137_S0.6651.00
32_L107_A0.6641.00
74_L79_L0.6611.00
108_N112_R0.6481.00
72_D82_R0.6471.00
106_E109_E0.6411.00
57_A64_Q0.6351.00
57_A67_I0.6331.00
28_R31_K0.6321.00
14_I17_I0.6301.00
134_K138_R0.6271.00
15_A19_R0.6261.00
17_I135_I0.6241.00
131_G138_R0.6131.00
119_L125_V0.6081.00
22_I26_N0.6041.00
67_I71_V0.5971.00
46_T96_I0.5971.00
122_V134_K0.5951.00
25_F111_L0.5921.00
13_T16_K0.5901.00
56_L94_V0.5871.00
105_L108_N0.5871.00
43_L47_S0.5851.00
24_E27_N0.5771.00
40_F104_L0.5711.00
25_F28_R0.5711.00
22_I25_F0.5691.00
83_I86_S0.5671.00
44_K104_L0.5671.00
78_G81_R0.5551.00
44_K108_N0.5461.00
105_L109_E0.5441.00
130_E133_N0.5421.00
16_K20_G0.5411.00
122_V125_V0.5371.00
44_K48_E0.5361.00
41_S45_A0.5341.00
14_I132_L0.5261.00
53_M91_I0.5201.00
27_N30_G0.5181.00
120_S138_R0.5171.00
20_G24_E0.5171.00
84_R88_D0.5091.00
73_K77_K0.5071.00
131_G135_I0.5071.00
35_L103_V0.5041.00
27_N31_K0.5011.00
23_K27_N0.5001.00
10_L128_L0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3f3xA 2 0.9653 99.9 0.251 Contact Map
3deuA 2 0.8889 99.9 0.273 Contact Map
3cjnA 2 0.9792 99.9 0.273 Contact Map
3cdhA 4 0.8958 99.9 0.276 Contact Map
3e6mA 2 0.9792 99.9 0.281 Contact Map
3u2rA 4 0.8889 99.9 0.282 Contact Map
3zplA 2 0.9931 99.9 0.283 Contact Map
4rguA 4 0.9722 99.9 0.285 Contact Map
2fbkA 2 0.9097 99.9 0.286 Contact Map
3boqA 2 0.9167 99.9 0.289 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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