Q97YD3 - SULSO - GREMLIN Contacts

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Q97YD3 - Uncharacterized protein

UniProt:	Q97YD3	Sequences: MRVIACFIRFVTLNVLMTISGITIKHFAYCPQIVRIESMGFTERVSEAMIEGEQVEKDKVMNFLYATLKPLNVVGKPIFRYGDLIGSPDYVLIYPNHWVPLDVKSGRKRYDHKLQMKYYLYLMDMNGINVKEGLLYYVSLKEMVRLEYNYAEKRYVEKVLSKIREAINGKVRVVQDARKCYNCGFFVYCKPKIKGNLAYVD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	201 (181)
Sequences:	925 (746)
Seq/√Len:	55.5

SULSO - Q97YD3 Q97Y86

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
132_E	145_R	4.900	1.00
78_I	88_P	4.323	1.00
124_D	153_K	3.696	1.00
81_Y	157_E	3.633	1.00
27_F	31_P	3.067	1.00
117_K	148_Y	2.974	1.00
110_Y	155_Y	2.915	1.00
34_V	163_I	2.714	1.00
31_P	162_K	2.682	1.00
112_H	137_Y	2.509	1.00
83_D	164_R	2.465	1.00
19_I	163_I	2.270	1.00
121_Y	156_V	2.215	1.00
99_V	134_L	2.150	1.00
59_K	90_Y	2.140	1.00
171_V	174_V	2.124	1.00
113_K	144_V	2.060	1.00
25_K	33_I	1.971	1.00
108_K	140_L	1.948	1.00
51_E	105_S	1.940	1.00
18_T	80_R	1.919	1.00
47_E	51_E	1.912	1.00
133_G	148_Y	1.911	1.00
48_A	105_S	1.899	1.00
154_R	158_K	1.896	1.00
100_P	133_G	1.889	1.00
93_I	98_W	1.883	1.00
110_Y	113_K	1.762	0.99
21_G	122_L	1.729	0.99
55_V	138_V	1.667	0.99
27_F	166_A	1.581	0.98
117_K	152_E	1.568	0.98
84_L	160_L	1.567	0.98
33_I	37_E	1.544	0.98
60_V	75_G	1.523	0.98
117_K	156_V	1.518	0.98
73_V	76_K	1.509	0.98
120_L	148_Y	1.494	0.97
158_K	162_K	1.474	0.97
75_G	87_S	1.464	0.97
35_R	39_M	1.445	0.97
50_I	54_Q	1.441	0.97
73_V	93_I	1.436	0.97
171_V	177_A	1.430	0.97
77_P	87_S	1.396	0.96
26_H	33_I	1.381	0.96
28_A	114_L	1.370	0.96
25_K	112_H	1.363	0.96
99_V	132_E	1.360	0.96
42_T	188_Y	1.347	0.95
20_S	41_F	1.325	0.95
99_V	145_R	1.318	0.95
27_F	162_K	1.311	0.95
27_F	163_I	1.290	0.94
35_R	38_S	1.271	0.94
60_V	87_S	1.253	0.93
24_I	118_Y	1.222	0.92
116_M	133_G	1.217	0.92
81_Y	125_M	1.211	0.92
156_V	160_L	1.208	0.92
92_L	143_M	1.204	0.92
161_S	165_E	1.204	0.92
186_F	192_K	1.197	0.91
122_L	126_N	1.195	0.91
84_L	118_Y	1.149	0.90
46_S	49_M	1.148	0.90
44_R	188_Y	1.141	0.89
15_V	18_T	1.133	0.89
113_K	155_Y	1.125	0.89
174_V	177_A	1.120	0.88
18_T	83_D	1.106	0.88
43_E	49_M	1.103	0.88
171_V	176_D	1.102	0.88
56_E	115_Q	1.092	0.87
76_K	93_I	1.091	0.87
91_V	130_V	1.088	0.87
171_V	175_Q	1.081	0.87
20_S	38_S	1.068	0.86
134_L	145_R	1.051	0.85
76_K	91_V	1.043	0.85
118_Y	156_V	1.037	0.84
44_R	187_V	1.036	0.84
48_A	182_N	1.033	0.84
45_V	53_E	1.025	0.83
150_Y	154_R	1.001	0.82
52_G	56_E	0.997	0.82
23_T	38_S	0.993	0.81
180_C	189_C	0.989	0.81
82_G	121_Y	0.985	0.81
23_T	34_V	0.979	0.81
184_G	191_P	0.970	0.80
26_H	37_E	0.968	0.80
180_C	183_C	0.965	0.80
74_V	77_P	0.965	0.80
117_K	135_L	0.959	0.79
114_L	155_Y	0.958	0.79
24_I	114_L	0.950	0.79
89_D	115_Q	0.944	0.78
154_R	168_N	0.943	0.78
55_V	105_S	0.939	0.78
105_S	139_S	0.939	0.78
18_T	79_F	0.938	0.78
147_E	150_Y	0.937	0.78
183_C	189_C	0.919	0.76
157_E	161_S	0.910	0.75
29_Y	179_K	0.908	0.75
104_K	115_Q	0.906	0.75
50_I	53_E	0.903	0.75
160_L	164_R	0.895	0.74
120_L	130_V	0.894	0.74
23_T	163_I	0.878	0.73
29_Y	48_A	0.873	0.72
90_Y	136_Y	0.871	0.72
27_F	167_I	0.868	0.72
159_V	162_K	0.863	0.72
162_K	165_E	0.860	0.71
34_V	112_H	0.857	0.71
133_G	146_L	0.855	0.71
80_R	160_L	0.851	0.70
53_E	57_K	0.849	0.70
28_A	155_Y	0.848	0.70
72_N	90_Y	0.847	0.70
86_G	124_D	0.841	0.70
21_G	86_G	0.840	0.69
51_E	55_V	0.836	0.69
66_A	70_P	0.830	0.69
108_K	112_H	0.830	0.69
158_K	161_S	0.829	0.68
34_V	166_A	0.826	0.68
132_E	147_E	0.825	0.68
121_Y	160_L	0.820	0.68
102_D	115_Q	0.811	0.67
94_Y	97_H	0.811	0.67
174_V	194_K	0.808	0.66
154_R	157_E	0.807	0.66
25_K	37_E	0.800	0.66
100_P	120_L	0.800	0.66
52_G	115_Q	0.790	0.65
57_K	81_Y	0.786	0.64
62_N	75_G	0.782	0.64
123_M	133_G	0.767	0.62
120_L	133_G	0.766	0.62
154_R	161_S	0.764	0.62
49_M	184_G	0.764	0.62
81_Y	165_E	0.760	0.62
20_S	23_T	0.760	0.62
21_G	156_V	0.757	0.61
46_S	112_H	0.749	0.61
121_Y	181_Y	0.747	0.60
165_E	168_N	0.743	0.60
88_P	91_V	0.740	0.60
140_L	144_V	0.737	0.59
41_F	87_S	0.737	0.59
26_H	35_R	0.733	0.59
29_Y	171_V	0.732	0.59
185_F	191_P	0.730	0.59
108_K	113_K	0.729	0.58
157_E	160_L	0.728	0.58
46_S	143_M	0.727	0.58
121_Y	153_K	0.723	0.58
178_R	181_Y	0.719	0.57
116_M	135_L	0.717	0.57
26_H	184_G	0.716	0.57
78_I	122_L	0.714	0.57
32_Q	40_G	0.711	0.57
18_T	85_I	0.711	0.57
21_G	118_Y	0.708	0.56
76_K	110_Y	0.707	0.56
33_I	184_G	0.704	0.56
37_E	49_M	0.701	0.55
15_V	83_D	0.693	0.55
28_A	111_D	0.689	0.54
33_I	122_L	0.687	0.54
141_K	146_L	0.683	0.54
177_A	192_K	0.681	0.53
123_M	130_V	0.677	0.53
54_Q	57_K	0.674	0.53
38_S	41_F	0.668	0.52
74_V	103_V	0.661	0.51
176_D	179_K	0.659	0.51
135_L	140_L	0.658	0.51
155_Y	159_V	0.657	0.51
158_K	165_E	0.655	0.51
98_W	130_V	0.654	0.50
147_E	161_S	0.652	0.50
56_E	102_D	0.642	0.49
36_I	134_L	0.640	0.49
55_V	137_Y	0.639	0.49
176_D	186_F	0.638	0.49
19_I	23_T	0.637	0.49
102_D	119_Y	0.636	0.48
25_K	109_R	0.632	0.48
98_W	128_I	0.626	0.47
19_I	34_V	0.625	0.47
65_Y	194_K	0.624	0.47
124_D	130_V	0.620	0.47
16_L	169_G	0.618	0.47
39_M	167_I	0.613	0.46
132_E	158_K	0.613	0.46
29_Y	66_A	0.608	0.45
24_I	34_V	0.604	0.45
117_K	153_K	0.604	0.45
25_K	46_S	0.599	0.45
45_V	122_L	0.599	0.45
181_Y	186_F	0.597	0.44
52_G	89_D	0.595	0.44
94_Y	99_V	0.595	0.44
17_M	194_K	0.594	0.44
81_Y	129_N	0.590	0.44
82_G	157_E	0.586	0.43
138_V	141_K	0.584	0.43
156_V	163_I	0.584	0.43
49_M	56_E	0.577	0.42
31_P	100_P	0.576	0.42
163_I	167_I	0.575	0.42
148_Y	192_K	0.574	0.42
115_Q	119_Y	0.572	0.42
87_S	166_A	0.569	0.41
30_C	180_C	0.568	0.41
132_E	148_Y	0.565	0.41
75_G	78_I	0.564	0.41
165_E	169_G	0.563	0.41
99_V	131_K	0.562	0.41
56_E	103_V	0.560	0.40
15_V	113_K	0.560	0.40
190_K	193_I	0.558	0.40
49_M	106_G	0.558	0.40
22_I	33_I	0.555	0.40
45_V	49_M	0.555	0.40
29_Y	102_D	0.555	0.40
86_G	122_L	0.554	0.40
15_V	48_A	0.554	0.40
80_R	83_D	0.553	0.40
30_C	189_C	0.552	0.40
84_L	111_D	0.551	0.39
59_K	103_V	0.548	0.39
61_M	74_V	0.546	0.39
70_P	94_Y	0.545	0.39
130_V	195_G	0.544	0.39
16_L	20_S	0.541	0.38
79_F	164_R	0.538	0.38
117_K	120_L	0.537	0.38
43_E	184_G	0.535	0.38
96_N	162_K	0.533	0.38
21_G	126_N	0.531	0.37
81_Y	150_Y	0.530	0.37
15_V	168_N	0.527	0.37
97_H	168_N	0.525	0.37
114_L	156_V	0.524	0.37
97_H	161_S	0.523	0.37
178_R	182_N	0.523	0.37
136_Y	142_E	0.522	0.37
55_V	108_K	0.521	0.36
23_T	26_H	0.519	0.36
91_V	123_M	0.519	0.36
31_P	34_V	0.516	0.36
38_S	102_D	0.515	0.36
52_G	104_K	0.515	0.36
152_E	156_V	0.514	0.36
18_T	31_P	0.512	0.36
134_L	142_E	0.511	0.35
88_P	122_L	0.509	0.35
131_K	157_E	0.507	0.35
108_K	137_Y	0.506	0.35
24_I	163_I	0.505	0.35
118_Y	160_L	0.505	0.35
52_G	102_D	0.503	0.35
30_C	183_C	0.503	0.35
26_H	122_L	0.503	0.35
98_W	136_Y	0.502	0.35
29_Y	182_N	0.501	0.34
120_L	153_K	0.500	0.34

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4r5qA	1	0.8657	99.9	0.579	Contact Map
4ic1A	5	0.9005	99.9	0.586	Contact Map
3u4qB	1	0.9652	99.7	0.701	Contact Map
3l0aA	3	0.9204	99.4	0.753	Contact Map
3h4rA	3	0.796	99.1	0.788	Contact Map
3u4qA	1	0.602	97.6	0.862	Contact Map
1w36C	1	0.9602	96.9	0.876	Contact Map
3sm4A	3	0.8756	81.6	0.922	Contact Map
3k93A	3	0.7861	72.2	0.928	Contact Map
3syyA	3	0.7861	67	0.931	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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