Q97YB8 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97YB8 - Transposase ISC1058

UniProt:	Q97YB8	Sequences: MGKSKYKRDWSKYDENVITRYKLMFPFYVFEHWWDLLAEENRNARTKYKAPKEFNEFLAFLHIFLPYRAIEGVLRALEQLKIIPTSLDYSTIWERVRNMNITFPEASDELEVIADATGIGTNTGGQYIVAKWGKTRDSKFLKIEIVMDNNEFNVVNAEVTSNEVESVKTVKDLQDKGKKFYGDKAYDANEVYKTGVEVVVPPKKNASTKRHLARRKAVREFRKLGYDRWREEKGYGVRWRVESLFSVKRTFGESVRQVLLGK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	262 (252)
Sequences:	285 (174)
Seq/√Len:	10.9

SULSO - Q97YB8 Q97Y57 Q7LX34 Q97TV4 Q97XJ2 Q97WA4 Q97VP0 Q97UJ1 Q97US4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
170_V	191_V	3.621	0.98
246_S	249_R	3.391	0.97
24_M	27_F	2.957	0.94
17_V	20_R	2.800	0.92
238_R	242_E	2.778	0.92
236_G	239_W	2.738	0.91
235_Y	242_E	2.673	0.90
41_N	46_T	2.596	0.88
235_Y	238_R	2.593	0.88
14_D	89_Y	2.583	0.88
187_D	214_R	2.516	0.87
121_T	139_K	2.410	0.84
209_K	212_L	2.355	0.83
10_W	13_Y	2.328	0.82
244_L	247_V	2.268	0.80
17_V	21_Y	2.241	0.79
114_A	174_Q	2.106	0.75
140_F	144_E	2.051	0.73
63_I	83_I	2.042	0.73
123_T	126_Q	1.974	0.70
244_L	248_K	1.969	0.70
65_L	189_N	1.896	0.67
88_D	198_V	1.864	0.65
169_T	172_D	1.843	0.64
88_D	91_T	1.843	0.64
184_K	203_K	1.841	0.64
119_I	159_V	1.771	0.61
119_I	255_V	1.771	0.61
125_G	203_K	1.770	0.61
146_V	150_N	1.768	0.61
202_P	206_A	1.762	0.61
130_A	135_T	1.743	0.60
116_A	166_S	1.735	0.59
248_K	255_V	1.718	0.59
156_N	196_V	1.703	0.58
239_W	245_F	1.662	0.56
15_E	19_T	1.639	0.55
147_M	241_V	1.635	0.55
144_E	166_S	1.632	0.55
51_P	54_F	1.616	0.54
114_A	139_K	1.613	0.54
204_K	207_S	1.601	0.53
58_L	74_L	1.599	0.53
122_N	139_K	1.577	0.52
26_P	29_V	1.577	0.52
227_D	230_R	1.572	0.52
187_D	203_K	1.570	0.52
214_R	229_W	1.563	0.51
90_S	228_R	1.550	0.51
144_E	160_T	1.545	0.50
24_M	29_V	1.542	0.50
92_I	181_Y	1.541	0.50
159_V	255_V	1.537	0.50
145_I	245_F	1.535	0.50
69_A	160_T	1.533	0.50
81_K	143_I	1.531	0.50
94_E	160_T	1.531	0.50
95_R	214_R	1.485	0.48
57_F	255_V	1.480	0.47
52_K	145_I	1.431	0.45
112_V	155_V	1.423	0.45
134_K	254_S	1.422	0.45
92_I	175_D	1.420	0.44
133_G	141_L	1.412	0.44
111_E	245_F	1.383	0.43
66_P	69_A	1.375	0.42
139_K	162_N	1.374	0.42
95_R	229_W	1.366	0.42
161_S	241_V	1.362	0.42
72_G	95_R	1.335	0.40
202_P	217_A	1.325	0.40
115_D	186_Y	1.321	0.40
111_E	149_N	1.319	0.40
17_V	187_D	1.312	0.39
148_D	185_A	1.307	0.39
30_F	92_I	1.295	0.39
6_Y	155_V	1.294	0.39
243_S	246_S	1.274	0.38
49_K	154_V	1.273	0.38
29_V	57_F	1.267	0.37
67_Y	80_L	1.253	0.37
46_T	246_S	1.248	0.37
198_V	217_A	1.246	0.36
86_S	133_G	1.239	0.36
244_L	251_F	1.238	0.36
142_K	166_S	1.238	0.36
40_E	46_T	1.230	0.36
92_I	116_A	1.225	0.36
28_Y	154_V	1.222	0.35
120_G	126_Q	1.219	0.35
32_H	49_K	1.213	0.35
93_W	145_I	1.206	0.35
122_N	136_R	1.203	0.35
230_R	236_G	1.199	0.34
113_I	149_N	1.195	0.34
182_G	186_Y	1.185	0.34
95_R	187_D	1.183	0.34
130_A	136_R	1.177	0.33
50_A	121_T	1.175	0.33
161_S	164_V	1.174	0.33
187_D	229_W	1.171	0.33
62_H	151_E	1.171	0.33
71_E	89_Y	1.163	0.33
129_V	135_T	1.161	0.33
61_L	136_R	1.155	0.33
22_K	51_P	1.142	0.32
25_F	61_L	1.140	0.32
115_D	118_G	1.140	0.32
28_Y	58_L	1.135	0.32
209_K	236_G	1.128	0.31
247_V	251_F	1.128	0.31
13_Y	17_V	1.127	0.31
237_V	243_S	1.116	0.31
13_Y	115_D	1.115	0.31
163_E	221_F	1.104	0.30
62_H	198_V	1.090	0.30
140_F	186_Y	1.089	0.30
77_L	155_V	1.083	0.30
16_N	117_T	1.081	0.29
73_V	259_L	1.079	0.29
13_Y	20_R	1.073	0.29
240_R	244_L	1.067	0.29
35_D	47_K	1.062	0.29
124_G	236_G	1.051	0.28
16_N	62_H	1.048	0.28
123_T	154_V	1.046	0.28
248_K	251_F	1.042	0.28
11_S	25_F	1.036	0.28
23_L	168_K	1.036	0.28
152_F	244_L	1.025	0.27
120_G	132_W	1.025	0.27
18_I	75_R	1.021	0.27
25_F	216_K	1.020	0.27
19_T	90_S	1.018	0.27
117_T	245_F	1.016	0.27
170_V	192_Y	1.015	0.27
6_Y	14_D	1.007	0.27
117_T	241_V	1.005	0.27
10_W	133_G	0.995	0.26
100_N	198_V	0.994	0.26
191_V	209_K	0.992	0.26
42_R	92_I	0.986	0.26
61_L	65_L	0.983	0.26
80_L	124_G	0.980	0.26
188_A	191_V	0.976	0.25
61_L	167_V	0.963	0.25
34_W	85_T	0.963	0.25
181_Y	199_V	0.953	0.25
24_M	28_Y	0.952	0.25
137_D	141_L	0.951	0.25
70_I	92_I	0.949	0.24
26_P	30_F	0.947	0.24
20_R	229_W	0.943	0.24
79_Q	257_Q	0.933	0.24
66_P	234_G	0.932	0.24
8_R	103_F	0.932	0.24
195_G	220_E	0.929	0.24
231_E	249_R	0.927	0.24
27_F	255_V	0.923	0.24
65_L	149_N	0.918	0.23
6_Y	16_N	0.908	0.23
124_G	128_I	0.907	0.23
32_H	36_L	0.907	0.23
128_I	240_R	0.907	0.23
127_Y	140_F	0.905	0.23
24_M	202_P	0.902	0.23
227_D	233_K	0.901	0.23
12_K	31_E	0.897	0.23
242_E	248_K	0.892	0.23
134_K	138_S	0.888	0.22
127_Y	144_E	0.886	0.22
20_R	33_W	0.885	0.22
74_L	155_V	0.884	0.22
156_N	173_L	0.882	0.22
68_R	201_P	0.882	0.22
177_G	194_T	0.878	0.22
111_E	121_T	0.875	0.22
170_V	245_F	0.867	0.22
148_D	239_W	0.858	0.21
111_E	124_G	0.857	0.21
115_D	131_K	0.854	0.21
35_D	254_S	0.849	0.21
180_F	196_V	0.848	0.21
165_E	239_W	0.848	0.21
227_D	231_E	0.847	0.21
132_W	191_V	0.845	0.21
54_F	67_Y	0.841	0.21
50_A	108_D	0.841	0.21
15_E	196_V	0.840	0.21
135_T	204_K	0.837	0.21
57_F	114_A	0.835	0.21
162_N	219_R	0.833	0.21
224_L	232_E	0.828	0.20
5_K	231_E	0.823	0.20
59_A	67_Y	0.823	0.20
145_I	179_K	0.820	0.20
159_V	220_E	0.819	0.20
213_A	253_E	0.817	0.20
113_I	196_V	0.815	0.20
56_E	96_V	0.815	0.20
5_K	8_R	0.809	0.20
71_E	75_R	0.805	0.20
56_E	104_P	0.805	0.20
11_S	19_T	0.801	0.20
33_W	54_F	0.799	0.20
183_D	186_Y	0.796	0.19
55_N	95_R	0.795	0.19
223_K	259_L	0.791	0.19
233_K	236_G	0.790	0.19
99_M	104_P	0.790	0.19
153_N	165_E	0.786	0.19
121_T	143_I	0.777	0.19
11_S	85_T	0.773	0.19
51_P	55_N	0.771	0.19
140_F	201_P	0.770	0.19
228_R	232_E	0.769	0.19
91_T	94_E	0.768	0.19
43_N	72_G	0.767	0.19
132_W	140_F	0.766	0.19
193_K	203_K	0.758	0.18
50_A	111_E	0.755	0.18
121_T	248_K	0.754	0.18
174_Q	257_Q	0.753	0.18
25_F	34_W	0.740	0.18
93_W	111_E	0.738	0.18
225_G	229_W	0.736	0.18
40_E	180_F	0.732	0.18
95_R	126_Q	0.731	0.18
102_T	231_E	0.729	0.18
77_L	102_T	0.728	0.18
18_I	71_E	0.727	0.17
65_L	158_E	0.725	0.17
161_S	257_Q	0.724	0.17
198_V	213_A	0.718	0.17
43_N	125_G	0.716	0.17
99_M	237_V	0.715	0.17
167_V	254_S	0.713	0.17
35_D	39_E	0.713	0.17
162_N	204_K	0.711	0.17
73_V	215_R	0.708	0.17
9_D	21_Y	0.707	0.17
66_P	257_Q	0.706	0.17
85_T	89_Y	0.700	0.17
143_I	202_P	0.700	0.17
72_G	88_D	0.697	0.17
14_D	71_E	0.695	0.17
128_I	135_T	0.694	0.17
8_R	58_L	0.690	0.16
74_L	256_R	0.688	0.16
67_Y	171_K	0.688	0.16
72_G	126_Q	0.687	0.16
33_W	214_R	0.686	0.16
112_V	126_Q	0.686	0.16
208_T	218_V	0.685	0.16
46_T	83_I	0.681	0.16
128_I	230_R	0.679	0.16
191_V	236_G	0.677	0.16
33_W	229_W	0.677	0.16
100_N	163_E	0.672	0.16
76_A	95_R	0.671	0.16
51_P	59_A	0.670	0.16
189_N	215_R	0.668	0.16
23_L	83_I	0.668	0.16
220_E	232_E	0.666	0.16
28_Y	196_V	0.665	0.16
101_I	106_A	0.665	0.16
16_N	162_N	0.665	0.16
245_F	249_R	0.661	0.16
109_E	255_V	0.660	0.16
82_I	92_I	0.659	0.16
55_N	137_D	0.659	0.16
49_K	172_D	0.658	0.16
147_M	240_R	0.655	0.16
56_E	247_V	0.654	0.16
72_G	125_G	0.651	0.15
18_I	69_A	0.647	0.15
62_H	192_Y	0.646	0.15
158_E	182_G	0.640	0.15
73_V	206_A	0.638	0.15
174_Q	196_V	0.638	0.15
35_D	59_A	0.637	0.15
77_L	107_S	0.637	0.15
27_F	122_N	0.636	0.15
59_A	111_E	0.636	0.15
169_T	180_F	0.635	0.15
113_I	181_Y	0.634	0.15
15_E	91_T	0.634	0.15
113_I	246_S	0.633	0.15
157_A	240_R	0.629	0.15
136_R	236_G	0.626	0.15
182_G	233_K	0.624	0.15
131_K	193_K	0.623	0.15
153_N	158_E	0.621	0.15
93_W	210_R	0.621	0.15
49_K	90_S	0.620	0.15
184_K	187_D	0.619	0.15
185_A	198_V	0.619	0.15
220_E	224_L	0.618	0.15
7_K	114_A	0.617	0.15
196_V	240_R	0.616	0.15
79_Q	106_A	0.616	0.15
46_T	147_M	0.613	0.15
91_T	152_F	0.613	0.15
246_S	253_E	0.611	0.14
167_V	225_G	0.611	0.14
11_S	15_E	0.610	0.14
180_F	198_V	0.609	0.14
52_K	95_R	0.607	0.14
19_T	34_W	0.607	0.14
75_R	160_T	0.604	0.14
128_I	181_Y	0.603	0.14
76_A	127_Y	0.602	0.14
20_R	187_D	0.601	0.14
6_Y	18_I	0.596	0.14
63_I	157_A	0.596	0.14
138_S	148_D	0.593	0.14
80_L	112_V	0.592	0.14
85_T	97_R	0.590	0.14
85_T	175_D	0.588	0.14
86_S	165_E	0.583	0.14
152_F	251_F	0.581	0.14
232_E	248_K	0.578	0.14
156_N	254_S	0.577	0.14
5_K	36_L	0.575	0.14
203_K	230_R	0.574	0.14
130_A	209_K	0.573	0.14
181_Y	196_V	0.572	0.14
62_H	128_I	0.571	0.14
11_S	29_V	0.570	0.14
224_L	228_R	0.569	0.14
121_T	137_D	0.569	0.14
166_S	183_D	0.569	0.14
136_R	248_K	0.568	0.14
35_D	38_A	0.567	0.13
48_Y	237_V	0.566	0.13
111_E	123_T	0.566	0.13
193_K	196_V	0.559	0.13
73_V	97_R	0.557	0.13
123_T	245_F	0.553	0.13
102_T	232_E	0.553	0.13
125_G	136_R	0.551	0.13
38_A	197_E	0.550	0.13
85_T	110_L	0.550	0.13
17_V	183_D	0.550	0.13
24_M	30_F	0.549	0.13
180_F	191_V	0.547	0.13
96_V	247_V	0.544	0.13
175_D	199_V	0.542	0.13
96_V	256_R	0.541	0.13
236_G	245_F	0.541	0.13
113_I	200_V	0.540	0.13
81_K	250_T	0.539	0.13
19_T	82_I	0.537	0.13
5_K	11_S	0.536	0.13
8_R	29_V	0.535	0.13
91_T	173_L	0.535	0.13
145_I	185_A	0.532	0.13
67_Y	93_W	0.531	0.13
228_R	248_K	0.530	0.13
14_D	17_V	0.527	0.13
102_T	220_E	0.527	0.13
78_E	113_I	0.527	0.13
120_G	187_D	0.525	0.13
135_T	169_T	0.524	0.13
39_E	48_Y	0.524	0.13
202_P	255_V	0.521	0.12
25_F	52_K	0.521	0.12
55_N	144_E	0.518	0.12
92_I	222_R	0.515	0.12
68_R	200_V	0.511	0.12
65_L	73_V	0.511	0.12
238_R	252_G	0.509	0.12
86_S	141_L	0.507	0.12
33_W	95_R	0.507	0.12
9_D	17_V	0.504	0.12
56_E	90_S	0.503	0.12
12_K	100_N	0.501	0.12
203_K	209_K	0.500	0.12

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1musA	2	0.8855	74.5	0.956	Contact Map
4fcyA	4	0.7023	57.5	0.961	Contact Map
4u7bA	2	0.8282	37.5	0.965	Contact Map
2gloA	1	0.2252	15.4	0.971	Contact Map
1k78A	1	0.3626	11.8	0.973	Contact Map
1pdnC	1	0.3511	10	0.973	Contact Map
1u78A	1	0.3435	8.6	0.974	Contact Map
2cobA	1	0.2557	6.4	0.976	Contact Map
1jkoC	1	0.1756	5.3	0.977	Contact Map
4l5eA	2	0.1756	4.2	0.978	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.009 seconds.