Q97YB3 - SULSO - GREMLIN Contacts

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Q97YB3 - Uncharacterized protein

UniProt:	Q97YB3	Sequences: MEENIWWRGKDYIEEDEDIKKWNSAKFKWIPKEINKISLQPFSLNFIVGPRQVGKTTLIKLLIKKLLESNHNPLSIFYCSCDLVSDYEELLKRTRDYLKIRKQEGIKSSFIFLDEVTFVKEWYRAVKHLIDTGELTSDVVTVSGSSSLTILKQKESFPGRRGNGTDVILYPLSFSGYINVINPKIEVRPGWYSEIEELFESYLKVGGLPPSINGLSPLKTYTEWIIYEINRVGRDEMLAKQILSAVLSTTPSKVSYNSIAKEIGVNHRTVAEYIKLFNDMFLTLTLHFIDVNTGYYNYRKQIKIHFVDPLFYDVMSTWTGVKRPDDPIIVEGIVASHLSRIYSIGYTEVGKEEIDVVTLPEVIGYEVKYRERTKQVKVIAGKMKKVITLSKHGENDTFPVHLFLAELNI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	409 (334)
Sequences:	4743 (3858)
Seq/√Len:	211.1

SULSO - Q97YB3 Q97YZ4 Q97YN5 Q97Y74 Q97XZ6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
81_C	113_L	3.954	1.00
58_L	169_L	3.346	1.00
44_L	130_I	3.320	1.00
278_N	285_T	3.298	1.00
61_L	64_K	3.288	1.00
50_P	53_V	3.208	1.00
257_N	261_K	3.141	1.00
126_V	142_V	3.111	1.00
59_I	143_S	3.089	1.00
250_T	332_G	2.732	1.00
338_L	356_V	2.599	1.00
60_K	78_Y	2.561	1.00
47_I	59_I	2.512	1.00
59_I	141_T	2.504	1.00
335_A	356_V	2.387	1.00
63_I	112_F	2.273	1.00
59_I	112_F	2.228	1.00
334_V	367_V	2.183	1.00
173_S	340_R	2.148	1.00
44_L	126_V	2.146	1.00
127_K	131_D	2.115	1.00
43_S	210_P	2.093	1.00
275_K	278_N	2.045	1.00
265_V	270_V	1.977	1.00
275_K	279_D	1.943	1.00
278_N	283_T	1.932	1.00
247_L	306_F	1.920	1.00
94_T	98_L	1.840	1.00
172_L	180_V	1.825	1.00
246_V	283_T	1.822	1.00
181_I	201_S	1.790	1.00
28_K	32_K	1.784	1.00
256_Y	271_A	1.783	1.00
203_L	333_I	1.779	1.00
31_P	65_K	1.773	1.00
284_L	339_S	1.757	1.00
178_I	198_L	1.717	1.00
87_Y	90_L	1.698	1.00
337_H	341_I	1.686	1.00
285_T	302_I	1.677	1.00
42_F	130_I	1.674	1.00
222_T	226_I	1.672	1.00
289_I	357_V	1.660	1.00
286_L	305_H	1.654	1.00
284_L	307_V	1.652	1.00
305_H	332_G	1.644	1.00
382_K	387_I	1.621	1.00
57_T	61_L	1.615	1.00
274_I	304_I	1.607	1.00
50_P	208_L	1.601	1.00
382_K	385_K	1.593	1.00
83_L	132_T	1.580	1.00
50_P	307_V	1.577	1.00
257_N	260_A	1.569	1.00
320_G	325_D	1.561	1.00
174_F	202_Y	1.549	1.00
382_K	386_V	1.545	1.00
370_R	373_T	1.539	1.00
177_Y	212_I	1.529	1.00
28_K	31_P	1.523	1.00
210_P	214_G	1.520	1.00
53_V	169_L	1.517	1.00
75_S	107_K	1.513	1.00
96_D	99_K	1.506	1.00
242_I	273_Y	1.502	1.00
93_R	98_L	1.502	1.00
356_V	367_V	1.495	1.00
96_D	100_I	1.493	1.00
376_V	380_A	1.490	1.00
337_H	340_R	1.483	1.00
46_F	161_R	1.476	1.00
237_M	241_Q	1.454	1.00
60_K	132_T	1.447	1.00
119_V	122_W	1.443	1.00
34_I	62_L	1.443	1.00
285_T	304_I	1.442	1.00
258_S	261_K	1.442	1.00
381_G	385_K	1.439	1.00
216_S	219_K	1.435	1.00
335_A	344_I	1.433	1.00
174_F	177_Y	1.432	1.00
78_Y	112_F	1.425	1.00
263_I	270_V	1.421	1.00
89_E	93_R	1.414	1.00
286_L	335_A	1.406	1.00
347_T	352_E	1.403	1.00
66_L	110_F	1.402	1.00
225_I	228_E	1.400	1.00
63_I	110_F	1.390	1.00
385_K	388_T	1.383	1.00
267_H	271_A	1.356	1.00
238_L	265_V	1.352	1.00
243_L	277_F	1.348	1.00
345_G	359_L	1.344	1.00
168_I	281_F	1.340	1.00
229_I	233_G	1.338	1.00
131_D	160_R	1.335	1.00
118_F	124_R	1.309	1.00
48_V	281_F	1.307	1.00
357_V	364_G	1.300	1.00
349_V	352_E	1.294	1.00
199_F	333_I	1.289	1.00
235_D	238_L	1.276	1.00
63_I	76_I	1.270	1.00
380_A	383_M	1.268	1.00
203_L	329_I	1.267	1.00
336_S	340_R	1.243	1.00
211_S	218_L	1.240	1.00
245_A	249_T	1.239	1.00
39_L	43_S	1.237	1.00
29_W	32_K	1.233	1.00
61_L	65_K	1.230	1.00
256_Y	274_I	1.226	1.00
90_L	93_R	1.224	1.00
174_F	195_I	1.223	1.00
47_I	169_L	1.220	1.00
126_V	140_V	1.212	1.00
226_I	230_N	1.207	1.00
332_G	336_S	1.207	1.00
94_T	101_R	1.205	1.00
242_I	270_V	1.204	1.00
117_T	144_G	1.190	1.00
115_E	160_R	1.183	1.00
381_G	386_V	1.175	1.00
95_R	98_L	1.174	1.00
228_E	233_G	1.170	1.00
241_Q	244_S	1.169	1.00
183_P	198_L	1.163	1.00
115_E	145_S	1.157	1.00
253_K	301_Q	1.154	1.00
260_A	270_V	1.143	1.00
196_E	200_E	1.140	1.00
197_E	201_S	1.135	1.00
252_S	328_I	1.130	1.00
159_G	353_E	1.128	1.00
380_A	384_K	1.127	1.00
334_V	369_Y	1.120	1.00
161_R	166_D	1.120	1.00
170_Y	284_L	1.111	1.00
172_L	177_Y	1.111	1.00
239_A	277_F	1.103	1.00
91_L	94_T	1.101	1.00
75_S	105_G	1.097	1.00
269_T	273_Y	1.096	1.00
174_F	178_I	1.096	1.00
205_V	211_S	1.095	1.00
111_I	140_V	1.093	1.00
284_L	336_S	1.082	1.00
327_P	331_E	1.080	1.00
246_V	274_I	1.080	1.00
296_Y	299_R	1.076	1.00
93_R	96_D	1.075	1.00
335_A	339_S	1.074	1.00
219_K	222_T	1.073	1.00
233_G	276_L	1.062	1.00
360_P	363_I	1.060	1.00
354_I	389_L	1.056	1.00
217_P	220_T	1.054	1.00
286_L	346_Y	1.051	1.00
144_G	160_R	1.042	1.00
338_L	344_I	1.040	1.00
202_Y	207_G	1.036	1.00
44_L	142_V	1.035	1.00
171_P	307_V	1.035	1.00
93_R	101_R	1.032	1.00
84_V	90_L	1.032	1.00
30_I	33_E	1.032	1.00
173_S	176_G	1.029	1.00
171_P	207_G	1.029	1.00
386_V	389_L	1.028	1.00
177_Y	201_S	1.027	1.00
112_F	141_T	1.019	1.00
203_L	326_D	1.018	1.00
144_G	159_G	1.012	1.00
303_K	331_E	1.009	1.00
194_E	198_L	1.007	1.00
199_F	203_L	1.006	1.00
152_K	279_D	1.005	1.00
89_E	92_K	1.002	1.00
381_G	384_K	1.001	1.00
221_Y	243_L	0.998	1.00
174_F	198_L	0.997	1.00
75_S	109_S	0.997	1.00
383_M	386_V	0.996	1.00
90_L	98_L	0.996	1.00
354_I	364_G	0.996	1.00
312_Y	329_I	0.995	1.00
219_K	223_E	0.995	1.00
385_K	389_L	0.990	1.00
48_V	166_D	0.984	1.00
381_G	388_T	0.984	1.00
353_E	368_K	0.982	1.00
210_P	213_N	0.980	1.00
52_Q	159_G	0.978	1.00
93_R	97_Y	0.976	1.00
177_Y	198_L	0.974	1.00
30_I	34_I	0.974	1.00
116_V	123_Y	0.970	1.00
144_G	327_P	0.969	1.00
200_E	326_D	0.965	1.00
218_L	310_L	0.961	1.00
175_S	179_N	0.959	1.00
95_R	99_K	0.955	1.00
170_Y	340_R	0.946	0.99
366_E	369_Y	0.945	0.99
242_I	259_I	0.943	0.99
245_A	262_E	0.943	0.99
284_L	335_A	0.938	0.99
380_A	388_T	0.935	0.99
257_N	267_H	0.934	0.99
86_D	89_E	0.925	0.99
375_Q	378_V	0.925	0.99
83_L	131_D	0.924	0.99
90_L	97_Y	0.921	0.99
121_E	124_R	0.918	0.99
250_T	312_Y	0.912	0.99
81_C	119_V	0.907	0.99
82_D	127_K	0.907	0.99
266_N	269_T	0.905	0.99
27_F	31_P	0.903	0.99
93_R	102_K	0.902	0.99
82_D	128_H	0.901	0.99
129_L	133_G	0.899	0.99
272_E	276_L	0.898	0.99
333_I	337_H	0.896	0.99
178_I	195_I	0.894	0.99
383_M	387_I	0.887	0.99
294_G	297_N	0.885	0.99
268_R	271_A	0.883	0.99
30_I	62_L	0.878	0.99
260_A	267_H	0.877	0.99
27_F	34_I	0.877	0.99
115_E	327_P	0.876	0.99
365_Y	368_K	0.876	0.99
200_E	204_K	0.876	0.99
240_K	244_S	0.875	0.99
305_H	356_V	0.875	0.99
115_E	144_G	0.875	0.99
247_L	315_M	0.874	0.99
27_F	58_L	0.874	0.99
159_G	368_K	0.874	0.99
29_W	167_V	0.870	0.99
222_T	240_K	0.868	0.99
230_N	236_E	0.867	0.99
115_E	366_E	0.862	0.99
92_K	95_R	0.859	0.99
53_V	208_L	0.858	0.99
76_I	110_F	0.857	0.99
259_I	263_I	0.856	0.99
48_V	168_I	0.856	0.99
113_L	140_V	0.853	0.99
112_F	143_S	0.848	0.99
306_F	332_G	0.847	0.99
47_I	58_L	0.840	0.99
194_E	197_E	0.835	0.99
384_K	387_I	0.832	0.99
330_V	369_Y	0.831	0.99
239_A	273_Y	0.830	0.99
313_D	329_I	0.826	0.99
181_I	198_L	0.825	0.99
288_F	300_K	0.823	0.99
256_Y	267_H	0.822	0.99
368_K	371_E	0.819	0.99
326_D	369_Y	0.818	0.99
236_E	240_K	0.817	0.99
51_R	115_E	0.815	0.98
211_S	217_P	0.815	0.98
59_I	63_I	0.810	0.98
373_T	378_V	0.807	0.98
193_S	196_E	0.807	0.98
177_Y	180_V	0.807	0.98
46_F	142_V	0.807	0.98
45_N	141_T	0.803	0.98
83_L	128_H	0.802	0.98
225_I	230_N	0.799	0.98
379_I	383_M	0.796	0.98
34_I	66_L	0.794	0.98
124_R	127_K	0.793	0.98
158_P	161_R	0.792	0.98
202_Y	333_I	0.792	0.98
243_L	306_F	0.792	0.98
158_P	231_R	0.790	0.98
373_T	377_K	0.789	0.98
29_W	33_E	0.789	0.98
258_S	262_E	0.787	0.98
205_V	212_I	0.786	0.98
76_I	112_F	0.785	0.98
309_P	313_D	0.783	0.98
289_I	359_L	0.783	0.98
205_V	215_L	0.781	0.98
254_V	257_N	0.779	0.98
239_A	242_I	0.779	0.98
225_I	229_I	0.774	0.98
258_S	295_Y	0.772	0.98
226_I	229_I	0.772	0.98
254_V	259_I	0.771	0.98
84_V	87_Y	0.770	0.98
354_I	385_K	0.770	0.98
98_L	101_R	0.770	0.98
131_D	156_S	0.770	0.98
221_Y	315_M	0.769	0.98
244_S	315_M	0.769	0.98
274_I	285_T	0.761	0.98
162_G	219_K	0.757	0.98
198_L	201_S	0.757	0.98
383_M	388_T	0.754	0.97
373_T	379_I	0.751	0.97
309_P	336_S	0.750	0.97
383_M	389_L	0.750	0.97
33_E	39_L	0.749	0.97
158_P	223_E	0.748	0.97
195_I	198_L	0.746	0.97
286_L	344_I	0.746	0.97
52_Q	353_E	0.741	0.97
31_P	66_L	0.740	0.97
309_P	329_I	0.738	0.97
31_P	38_S	0.737	0.97
94_T	97_Y	0.737	0.97
113_L	126_V	0.735	0.97
245_A	263_I	0.735	0.97
220_T	224_W	0.732	0.97
160_R	355_D	0.730	0.97
60_K	63_I	0.728	0.97
303_K	346_Y	0.728	0.97
31_P	34_I	0.727	0.97
168_I	339_S	0.723	0.97
50_P	170_Y	0.720	0.97
226_I	233_G	0.720	0.97
208_L	211_S	0.718	0.97
229_I	276_L	0.718	0.97
352_E	384_K	0.717	0.97
309_P	332_G	0.715	0.97
353_E	366_E	0.713	0.96
97_Y	100_I	0.713	0.96
42_F	162_G	0.710	0.96
331_E	353_E	0.708	0.96
253_K	346_Y	0.704	0.96
329_I	333_I	0.703	0.96
44_L	140_V	0.703	0.96
27_F	61_L	0.703	0.96
246_V	306_F	0.698	0.96
84_V	88_E	0.693	0.96
227_Y	231_R	0.692	0.96
66_L	76_I	0.692	0.96
193_S	197_E	0.692	0.96
307_V	336_S	0.692	0.96
86_D	90_L	0.692	0.96
46_F	166_D	0.690	0.96
88_E	92_K	0.685	0.96
89_E	94_T	0.685	0.96
230_N	233_G	0.685	0.96
63_I	78_Y	0.684	0.96
171_P	308_D	0.683	0.96
249_T	252_S	0.678	0.95
99_K	102_K	0.675	0.95
128_H	132_T	0.673	0.95
52_Q	144_G	0.673	0.95
50_P	56_T	0.672	0.95
83_L	86_D	0.671	0.95
53_V	171_P	0.671	0.95
355_D	366_E	0.670	0.95
153_Q	232_V	0.668	0.95
180_V	212_I	0.665	0.95
246_V	304_I	0.665	0.95
201_S	215_L	0.665	0.95
277_F	283_T	0.665	0.95
374_K	378_V	0.664	0.95
238_L	263_I	0.663	0.95
241_Q	271_A	0.663	0.95
249_T	262_E	0.659	0.95
239_A	276_L	0.659	0.95
378_V	381_G	0.659	0.95
82_D	118_F	0.658	0.95
27_F	65_K	0.653	0.94
287_H	302_I	0.650	0.94
87_Y	91_L	0.650	0.94
181_I	215_L	0.646	0.94
115_E	353_E	0.645	0.94
251_P	305_H	0.642	0.94
30_I	167_V	0.640	0.94
45_N	167_V	0.639	0.94
49_G	54_G	0.638	0.94
171_P	336_S	0.638	0.94
381_G	389_L	0.637	0.94
311_F	315_M	0.636	0.93
253_K	256_Y	0.636	0.93
170_Y	339_S	0.636	0.93
84_V	128_H	0.635	0.93
81_C	122_W	0.634	0.93
80_S	131_D	0.633	0.93
51_R	144_G	0.631	0.93
375_Q	379_I	0.626	0.93
245_A	259_I	0.622	0.93
242_I	274_I	0.622	0.93
193_S	198_L	0.621	0.93
80_S	132_T	0.621	0.93
172_L	176_G	0.619	0.93
217_P	223_E	0.616	0.92
86_D	100_I	0.616	0.92
174_F	333_I	0.615	0.92
80_S	83_L	0.614	0.92
269_T	272_E	0.614	0.92
127_K	148_L	0.613	0.92
123_Y	155_E	0.611	0.92
335_A	367_V	0.611	0.92
33_E	45_N	0.607	0.92
339_S	343_S	0.603	0.92
330_V	367_V	0.603	0.92
305_H	335_A	0.602	0.92
250_T	306_F	0.602	0.92
90_L	94_T	0.601	0.91
144_G	355_D	0.601	0.91
43_S	130_I	0.600	0.91
290_D	296_Y	0.600	0.91
62_L	167_V	0.598	0.91
244_S	248_S	0.597	0.91
166_D	223_E	0.595	0.91
364_G	368_K	0.592	0.91
171_P	208_L	0.590	0.91
347_T	354_I	0.589	0.91
368_K	373_T	0.588	0.91
345_G	348_E	0.588	0.91
133_G	138_D	0.588	0.91
331_E	366_E	0.588	0.91
88_E	121_E	0.587	0.90
176_G	179_N	0.586	0.90
172_L	209_P	0.585	0.90
344_I	356_V	0.582	0.90
102_K	106_I	0.579	0.90
115_E	331_E	0.577	0.90
249_T	258_S	0.574	0.89
242_I	265_V	0.570	0.89
260_A	263_I	0.570	0.89
116_V	255_S	0.570	0.89
201_S	205_V	0.569	0.89
262_E	295_Y	0.569	0.89
173_S	177_Y	0.566	0.89
367_V	378_V	0.564	0.89
179_N	182_N	0.561	0.88
52_Q	180_V	0.560	0.88
146_S	150_I	0.559	0.88
57_T	60_K	0.558	0.88
309_P	333_I	0.555	0.88
225_I	243_L	0.555	0.88
122_W	126_V	0.554	0.88
116_V	122_W	0.554	0.88
354_I	357_V	0.553	0.88
384_K	388_T	0.553	0.88
240_K	315_M	0.552	0.88
170_Y	307_V	0.552	0.88
230_N	234_R	0.552	0.88
366_E	385_K	0.550	0.87
261_K	267_H	0.549	0.87
162_G	167_V	0.549	0.87
327_P	368_K	0.546	0.87
355_D	368_K	0.545	0.87
89_E	97_Y	0.545	0.87
133_G	139_V	0.545	0.87
105_G	108_S	0.545	0.87
242_I	263_I	0.545	0.87
228_E	234_R	0.544	0.87
126_V	129_L	0.544	0.87
251_P	254_V	0.543	0.87
178_I	202_Y	0.543	0.87
27_F	62_L	0.542	0.87
226_I	231_R	0.541	0.87
255_S	258_S	0.538	0.86
225_I	231_R	0.535	0.86
47_I	141_T	0.534	0.86
207_G	308_D	0.531	0.86
58_L	172_L	0.531	0.86
369_Y	373_T	0.531	0.86
334_V	338_L	0.528	0.85
384_K	389_L	0.528	0.85
244_S	297_N	0.528	0.85
156_S	159_G	0.527	0.85
283_T	304_I	0.526	0.85
228_E	231_R	0.525	0.85
310_L	313_D	0.525	0.85
208_L	309_P	0.524	0.85
145_S	159_G	0.521	0.84
179_N	183_P	0.520	0.84
93_R	119_V	0.519	0.84
382_K	388_T	0.518	0.84
380_A	385_K	0.517	0.84
77_F	109_S	0.515	0.84
162_G	166_D	0.514	0.84
260_A	265_V	0.514	0.84
376_V	383_M	0.514	0.84
118_F	127_K	0.513	0.84
124_R	357_V	0.513	0.84
359_L	362_V	0.511	0.83
131_D	366_E	0.511	0.83
327_P	355_D	0.511	0.83
115_E	368_K	0.507	0.83
199_F	326_D	0.507	0.83
91_L	95_R	0.502	0.82
28_K	34_I	0.502	0.82
229_I	234_R	0.501	0.82
217_P	222_T	0.501	0.82
225_I	233_G	0.500	0.82

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2qenA	1	0.6699	100	0.662	Contact Map
2fnaA	1	0.665	100	0.664	Contact Map
3pfiA	3	0.6675	99.8	0.771	Contact Map
1w5sA	1	0.7555	99.7	0.805	Contact Map
1hqcA	1	0.6748	99.7	0.806	Contact Map
1fnnA	1	0.7457	99.6	0.808	Contact Map
1in4A	1	0.6724	99.5	0.832	Contact Map
2qbyA	1	0.7384	99.4	0.832	Contact Map
2v1uA	1	0.7604	99.4	0.833	Contact Map
1iqpA	5	0.7384	99.4	0.835	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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