Q97YA0 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97YA0 - Uncharacterized protein

UniProt:	Q97YA0	Sequences: MVIQVFRLNFRLRTGFRVGGGQEVGDNVIRQLRIGVEGVMIPASSWKGMFRRVSEIVLNSEDHFEEHSKKEVDTRTINALLKSDEKFRRIAISKVGKEVITQNGINVDKLDSESLSDLRRIYNEYNCPIERLYGSNYFAGGITISDSVIPNASIMERTHVTIERKSKKASEKHLFSEEIIDAEKIEVKVIVRNEFELWKNSLKLLREIGYFIGGSKSRGIGYIVLDEKESEYAVINNFSETPKFSELKRYLS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	252 (214)
Sequences:	437 (404)
Seq/√Len:	27.6

SULSO - Q97YA0 Q97YA6 Q97YA7 Q97XK7 CMR4 Q97Y36

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
127_C	130_E	5.372	1.00
158_T	176_S	5.231	1.00
180_I	185_I	5.023	1.00
179_I	220_I	3.695	1.00
127_C	134_G	2.938	1.00
163_E	170_S	2.937	1.00
162_I	167_K	2.868	1.00
32_L	42_P	2.772	1.00
12_L	16_F	2.747	1.00
160_V	169_A	2.709	1.00
21_G	33_R	2.543	0.99
8_L	187_V	2.541	0.99
19_G	214_G	2.425	0.99
159_H	175_F	2.391	0.99
31_Q	185_I	2.213	0.98
155_M	181_D	2.208	0.98
159_H	220_I	2.204	0.98
33_R	178_E	2.183	0.98
18_V	42_P	2.157	0.98
47_K	217_S	2.060	0.97
127_C	131_R	2.054	0.97
55_E	164_R	1.999	0.96
18_V	185_I	1.920	0.95
19_G	181_D	1.918	0.95
16_F	212_I	1.815	0.93
19_G	178_E	1.813	0.93
158_T	174_L	1.797	0.93
159_H	177_E	1.792	0.93
19_G	31_Q	1.789	0.93
79_A	82_K	1.767	0.93
139_A	225_L	1.727	0.92
13_R	224_V	1.698	0.91
122_Y	125_Y	1.671	0.90
169_A	172_K	1.637	0.89
158_T	175_F	1.624	0.89
15_G	179_I	1.617	0.89
34_I	149_I	1.597	0.88
30_R	181_D	1.529	0.86
174_L	214_G	1.471	0.83
159_H	218_R	1.455	0.83
14_T	30_R	1.435	0.82
211_F	222_Y	1.433	0.82
147_S	187_V	1.426	0.81
28_V	33_R	1.403	0.80
157_R	160_V	1.390	0.80
211_F	215_S	1.379	0.79
101_T	106_N	1.376	0.79
41_I	212_I	1.358	0.78
75_R	78_N	1.348	0.78
77_I	81_L	1.344	0.77
48_G	213_G	1.336	0.77
213_G	221_G	1.336	0.77
48_G	221_G	1.336	0.77
42_P	49_M	1.326	0.76
103_N	106_N	1.319	0.76
171_E	174_L	1.313	0.76
90_I	93_S	1.305	0.75
179_I	222_Y	1.287	0.74
31_Q	39_V	1.274	0.73
49_M	210_Y	1.267	0.73
51_R	55_E	1.267	0.73
16_F	180_I	1.255	0.72
126_N	135_S	1.237	0.71
45_S	218_R	1.231	0.71
181_D	214_G	1.213	0.70
17_R	214_G	1.203	0.69
50_F	144_I	1.201	0.69
54_S	201_S	1.195	0.68
17_R	215_S	1.193	0.68
31_Q	180_I	1.193	0.68
102_Q	111_D	1.187	0.68
18_V	180_I	1.186	0.68
158_T	162_I	1.184	0.68
42_P	157_R	1.169	0.67
132_L	135_S	1.162	0.66
12_L	214_G	1.162	0.66
156_E	178_E	1.156	0.66
130_E	134_G	1.146	0.65
11_R	226_D	1.097	0.62
94_K	97_K	1.087	0.61
77_I	82_K	1.085	0.61
83_S	86_K	1.084	0.61
175_F	218_R	1.082	0.61
163_E	166_S	1.074	0.60
115_L	118_L	1.074	0.60
50_F	151_N	1.072	0.60
160_V	220_I	1.070	0.60
37_E	46_W	1.061	0.59
119_R	122_Y	1.058	0.59
102_Q	106_N	1.056	0.59
179_I	215_S	1.056	0.59
119_R	123_N	1.054	0.59
98_E	102_Q	1.054	0.59
53_V	167_K	1.052	0.58
21_G	174_L	1.042	0.58
14_T	194_E	1.041	0.58
159_H	179_I	1.028	0.57
85_E	89_R	1.026	0.56
20_G	32_L	1.008	0.55
155_M	169_A	1.007	0.55
162_I	218_R	1.002	0.55
168_K	214_G	1.001	0.55
87_F	132_L	0.994	0.54
41_I	205_L	0.990	0.54
106_N	111_D	0.989	0.54
201_S	204_L	0.988	0.54
46_W	155_M	0.987	0.53
17_R	181_D	0.982	0.53
29_I	177_E	0.981	0.53
100_I	103_N	0.977	0.53
162_I	175_F	0.973	0.52
213_G	219_G	0.969	0.52
48_G	219_G	0.969	0.52
78_N	81_L	0.958	0.51
26_D	175_F	0.957	0.51
158_T	215_S	0.942	0.50
15_G	220_I	0.931	0.49
160_V	173_H	0.926	0.49
42_P	45_S	0.924	0.49
157_R	218_R	0.920	0.48
21_G	28_V	0.920	0.48
15_G	167_K	0.918	0.48
131_R	135_S	0.917	0.48
85_E	88_R	0.915	0.48
160_V	175_F	0.912	0.48
185_I	189_V	0.907	0.47
42_P	218_R	0.902	0.47
28_V	32_L	0.891	0.46
74_T	78_N	0.888	0.46
127_C	133_Y	0.885	0.46
89_R	94_K	0.880	0.45
15_G	49_M	0.878	0.45
93_S	96_G	0.875	0.45
130_E	133_Y	0.872	0.45
102_Q	105_I	0.872	0.45
32_L	40_M	0.869	0.45
72_V	75_R	0.868	0.44
28_V	181_D	0.863	0.44
15_G	211_F	0.862	0.44
15_G	176_S	0.858	0.44
17_R	39_V	0.857	0.44
11_R	184_K	0.857	0.44
97_K	100_I	0.854	0.43
24_V	149_I	0.851	0.43
121_I	125_Y	0.835	0.42
41_I	52_R	0.832	0.42
15_G	157_R	0.832	0.42
46_W	141_G	0.827	0.41
46_W	147_S	0.826	0.41
37_E	191_V	0.821	0.41
146_D	166_S	0.815	0.41
17_R	33_R	0.814	0.40
11_R	224_V	0.813	0.40
16_F	26_D	0.813	0.40
160_V	172_K	0.809	0.40
40_M	43_A	0.806	0.40
139_A	220_I	0.805	0.40
95_V	98_E	0.802	0.40
43_A	123_N	0.791	0.39
27_N	33_R	0.789	0.39
165_K	168_K	0.788	0.39
7_R	186_E	0.783	0.38
89_R	98_E	0.783	0.38
35_G	154_I	0.782	0.38
27_N	176_S	0.781	0.38
31_Q	178_E	0.776	0.38
44_S	47_K	0.776	0.38
169_A	216_K	0.774	0.38
14_T	218_R	0.768	0.37
10_F	223_I	0.767	0.37
100_I	111_D	0.767	0.37
214_G	217_S	0.765	0.37
99_V	106_N	0.763	0.37
75_R	81_L	0.762	0.37
161_T	169_A	0.761	0.37
77_I	83_S	0.759	0.36
17_R	27_N	0.757	0.36
138_F	198_W	0.757	0.36
42_P	216_K	0.753	0.36
17_R	178_E	0.752	0.36
54_S	199_K	0.751	0.36
99_V	104_G	0.749	0.36
76_T	83_S	0.748	0.36
167_K	175_F	0.747	0.36
163_E	189_V	0.747	0.36
159_H	211_F	0.746	0.36
51_R	219_G	0.746	0.36
32_L	218_R	0.745	0.35
175_F	215_S	0.739	0.35
124_E	135_S	0.737	0.35
174_L	211_F	0.737	0.35
99_V	103_N	0.735	0.35
47_K	178_E	0.734	0.35
178_E	181_D	0.732	0.35
77_I	80_L	0.732	0.35
90_I	98_E	0.731	0.35
32_L	222_Y	0.728	0.34
94_K	106_N	0.727	0.34
194_E	197_L	0.722	0.34
162_I	166_S	0.720	0.34
25_G	39_V	0.720	0.34
6_F	113_E	0.718	0.34
37_E	152_A	0.716	0.34
52_R	187_V	0.705	0.33
56_I	200_N	0.705	0.33
94_K	101_T	0.701	0.32
15_G	24_V	0.701	0.32
100_I	105_I	0.699	0.32
125_Y	129_I	0.698	0.32
115_L	119_R	0.698	0.32
169_A	173_H	0.693	0.32
15_G	155_M	0.693	0.32
144_I	148_V	0.690	0.32
21_G	181_D	0.688	0.32
158_T	220_I	0.685	0.31
196_E	203_K	0.685	0.31
94_K	98_E	0.683	0.31
157_R	179_I	0.681	0.31
27_N	158_T	0.680	0.31
173_H	220_I	0.680	0.31
11_R	183_E	0.680	0.31
24_V	31_Q	0.669	0.30
101_T	112_S	0.668	0.30
157_R	220_I	0.667	0.30
141_G	149_I	0.662	0.30
125_Y	224_V	0.661	0.30
14_T	181_D	0.654	0.29
18_V	183_E	0.649	0.29
155_M	182_A	0.648	0.29
62_D	114_S	0.646	0.29
17_R	31_Q	0.646	0.29
10_F	187_V	0.638	0.28
15_G	159_H	0.634	0.28
118_L	121_I	0.633	0.28
161_T	215_S	0.632	0.28
12_L	223_I	0.631	0.28
167_K	216_K	0.631	0.28
115_L	132_L	0.628	0.28
89_R	95_V	0.624	0.28
161_T	170_S	0.624	0.28
95_V	99_V	0.623	0.28
72_V	130_E	0.622	0.27
92_I	97_K	0.618	0.27
12_L	215_S	0.610	0.27
9_N	227_E	0.608	0.27
96_G	99_V	0.603	0.26
45_S	183_E	0.602	0.26
216_K	222_Y	0.601	0.26
117_D	151_N	0.601	0.26
96_G	106_N	0.601	0.26
47_K	174_L	0.600	0.26
95_V	101_T	0.596	0.26
10_F	40_M	0.596	0.26
19_G	215_S	0.596	0.26
161_T	167_K	0.594	0.26
169_A	174_L	0.591	0.26
39_V	51_R	0.589	0.25
87_F	93_S	0.589	0.25
157_R	175_F	0.586	0.25
174_L	219_G	0.585	0.25
72_V	77_I	0.582	0.25
43_A	166_S	0.581	0.25
45_S	49_M	0.579	0.25
174_L	177_E	0.578	0.25
139_A	159_H	0.575	0.25
7_R	188_K	0.573	0.25
98_E	101_T	0.569	0.24
161_T	172_K	0.566	0.24
49_M	52_R	0.566	0.24
121_I	124_E	0.563	0.24
77_I	84_D	0.563	0.24
52_R	141_G	0.559	0.24
183_E	223_I	0.558	0.24
17_R	34_I	0.558	0.24
18_V	157_R	0.556	0.24
27_N	171_E	0.555	0.24
199_K	227_E	0.555	0.24
15_G	225_L	0.554	0.24
22_Q	29_I	0.554	0.24
187_V	192_R	0.554	0.24
13_R	140_G	0.552	0.23
10_F	81_L	0.550	0.23
53_V	171_E	0.550	0.23
13_R	192_R	0.550	0.23
168_K	220_I	0.549	0.23
16_F	55_E	0.545	0.23
178_E	214_G	0.542	0.23
10_F	13_R	0.539	0.23
149_I	181_D	0.537	0.23
179_I	210_Y	0.535	0.22
27_N	30_R	0.533	0.22
22_Q	33_R	0.533	0.22
12_L	29_I	0.532	0.22
63_H	75_R	0.531	0.22
154_I	178_E	0.530	0.22
52_R	147_S	0.527	0.22
6_F	20_G	0.527	0.22
6_F	64_F	0.526	0.22
97_K	104_G	0.524	0.22
143_T	149_I	0.524	0.22
137_Y	140_G	0.524	0.22
31_Q	149_I	0.523	0.22
146_D	214_G	0.520	0.22
101_T	104_G	0.520	0.22
84_D	90_I	0.519	0.22
153_S	179_I	0.518	0.22
18_V	154_I	0.516	0.22
54_S	225_L	0.515	0.21
177_E	181_D	0.512	0.21
114_S	118_L	0.510	0.21
130_E	144_I	0.508	0.21
14_T	187_V	0.507	0.21
148_V	203_K	0.507	0.21
143_T	192_R	0.506	0.21
10_F	133_Y	0.506	0.21
129_I	134_G	0.504	0.21
24_V	155_M	0.504	0.21
158_T	177_E	0.503	0.21
142_I	197_L	0.503	0.21
26_D	218_R	0.500	0.21
35_G	216_K	0.500	0.21

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4qtsC	1	0.6151	100	0.407	Contact Map
3x1lC	3	0.8849	100	0.411	Contact Map
4w8wA	1	0.7579	100	0.434	Contact Map
4n0lA	1	0.8413	100	0.442	Contact Map
4w8vA	1	0.8333	100	0.542	Contact Map
3x1lH	1	0.7619	100	0.544	Contact Map
4txdA	1	0.8849	99	0.799	Contact Map
4qtsA	1	0.8135	99	0.804	Contact Map
4w8zA	1	0.6905	98.1	0.852	Contact Map
4l6uA	1	0.6944	97.9	0.858	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0086 seconds.