Q97Y93 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97Y93 - ATP-dependent RNA helicase homolog

UniProt:	Q97Y93	Sequences: MKLRLRKPMRSAGNMSSLVDFYNDFITRHGFEERKGIEETLRYLENGHNVILKAPTGYGKTTLTMILANAVSSNIDIGSRVIHVLPYRAIVQDLYLKLKKYADKGIIYTKSIGAQDMDYHDSPFFMKKVNVTTLDTFILNLFKLPTIDFKLIFKNYGSHYEFPRALIYSSIVIFDEFHLLGEDGKSLGAGLSAIEVLSDAGVPIVVTSATIDKGLERVLMDKLGKSGKVVYASDFKIDRKIYVNELEKDEISIADEKVKEGKRVLLVYNTRMGAIEAYWKLKERGLSPILIHSKFSKKDRIDKVNKINDAKLVVSTQVIEAGIDTSFDVLITEACPSHNLIQRAGRVARYGKGGKGKLEGEVYIFPFSGKVYNEGEVKETMKRVRKLKTIDESLLIERDYTKEIDSILARDLSVIDNSVFVDYKKVKSLYENICSITRETSIILGFPPNSDNVDDAIPLTEEEAIKIIKSKGSSAFVGNSNIKLYAGKCLQLEMIKNDILGVRIQDYNSEIGGVY	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	515 (409)
Sequences:	13695 (9419)
Seq/√Len:	465.8

ECOLI - DEAD RECQ YFJK DBPA RHLE SRMB RECG YEJH RHLB RAPA
BACSU - CSHA DBPA YPRA RECQ RECS CSHB RECG YFML COMFA YWQA YQHH
HALSA - HELS Q9HN80 Q9HNB2 RAD25 O52003 Q9HQA5 Q9HMW5 O51997
SULSO - Q97Y93 Q97WW1 Q981C8 HELS Q97YC4 Q97X74 HELX Q980C0 Q97ZF9 Q97WT0 Q97X64

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
65_M	98_L	4.895	1.00
124_F	127_K	4.357	1.00
373_N	377_V	4.034	1.00
64_T	173_I	3.924	1.00
55_P	58_Y	3.665	1.00
132_T	137_F	3.617	1.00
85_L	94_L	3.593	1.00
44_L	205_V	3.324	1.00
28_R	104_K	3.133	1.00
36_G	52_L	3.099	1.00
372_Y	376_E	2.983	1.00
306_K	311_K	2.942	1.00
67_L	81_V	2.937	1.00
271_R	294_K	2.889	1.00
268_Y	274_A	2.878	1.00
212_D	215_L	2.824	1.00
268_Y	277_A	2.775	1.00
286_L	312_L	2.747	1.00
305_N	309_D	2.704	1.00
335_C	363_Y	2.587	1.00
236_K	239_R	2.559	1.00
215_L	218_V	2.461	1.00
278_Y	288_P	2.336	1.00
188_G	192_S	2.306	1.00
250_E	257_K	2.289	1.00
238_D	242_Y	2.285	1.00
384_V	388_K	2.257	1.00
380_T	384_V	2.256	1.00
289_I	306_K	2.200	1.00
45_E	70_A	2.199	1.00
302_D	306_K	2.156	1.00
262_K	328_D	2.086	1.00
238_D	241_I	2.074	1.00
95_Y	99_K	2.069	1.00
373_N	376_E	2.032	1.00
215_L	219_L	1.968	1.00
49_N	206_V	1.961	1.00
213_K	217_R	1.956	1.00
253_I	256_E	1.955	1.00
251_I	257_K	1.947	1.00
48_H	227_G	1.946	1.00
250_E	258_V	1.932	1.00
253_I	257_K	1.904	1.00
268_Y	314_V	1.901	1.00
31_F	62_T	1.899	1.00
370_K	373_N	1.898	1.00
275_I	290_L	1.896	1.00
250_E	253_I	1.896	1.00
344_A	361_E	1.889	1.00
184_G	188_G	1.873	1.00
363_Y	366_P	1.867	1.00
97_K	100_K	1.855	1.00
67_L	70_A	1.845	1.00
364_I	367_F	1.842	1.00
67_L	72_S	1.800	1.00
372_Y	375_G	1.781	1.00
28_R	103_D	1.776	1.00
250_E	254_A	1.775	1.00
81_V	171_I	1.724	1.00
64_T	207_T	1.717	1.00
42_R	46_N	1.706	1.00
319_I	323_I	1.690	1.00
237_I	240_K	1.676	1.00
326_S	352_K	1.657	1.00
366_P	369_G	1.652	1.00
216_E	219_L	1.645	1.00
64_T	94_L	1.637	1.00
255_D	259_K	1.626	1.00
377_V	380_T	1.625	1.00
403_E	407_I	1.579	1.00
400_Y	404_I	1.578	1.00
98_L	129_V	1.572	1.00
44_L	50_V	1.565	1.00
277_A	314_V	1.560	1.00
140_N	161_E	1.556	1.00
372_Y	377_V	1.551	1.00
238_D	245_E	1.542	1.00
251_I	255_D	1.539	1.00
239_R	245_E	1.523	1.00
262_K	352_K	1.521	1.00
214_G	218_V	1.514	1.00
453_V	456_A	1.502	1.00
218_V	222_K	1.500	1.00
66_I	69_N	1.492	1.00
278_Y	282_K	1.484	1.00
380_T	383_R	1.474	1.00
255_D	284_R	1.451	1.00
43_Y	46_N	1.450	1.00
82_I	167_I	1.448	1.00
274_A	292_H	1.437	1.00
218_V	221_D	1.433	1.00
236_K	240_K	1.419	1.00
315_S	319_I	1.407	1.00
67_L	173_I	1.399	1.00
365_F	369_G	1.394	1.00
382_K	390_I	1.381	1.00
69_N	73_S	1.378	1.00
251_I	258_V	1.376	1.00
363_Y	369_G	1.373	1.00
52_L	207_T	1.365	1.00
332_T	335_C	1.359	1.00
187_L	191_L	1.359	1.00
442_I	446_F	1.352	1.00
384_V	387_L	1.348	1.00
164_R	167_I	1.335	1.00
403_E	408_L	1.335	1.00
163_P	166_L	1.327	1.00
281_L	314_V	1.327	1.00
113_G	120_H	1.325	1.00
400_Y	403_E	1.323	1.00
289_I	303_K	1.322	1.00
98_L	131_V	1.312	1.00
432_N	435_S	1.307	1.00
364_I	369_G	1.284	1.00
363_Y	367_F	1.281	1.00
384_V	390_I	1.274	1.00
395_L	399_D	1.273	1.00
332_T	344_A	1.271	1.00
278_Y	290_L	1.270	1.00
192_S	196_V	1.267	1.00
362_V	365_F	1.261	1.00
246_L	249_D	1.249	1.00
80_R	168_Y	1.248	1.00
172_V	204_I	1.236	1.00
177_F	206_V	1.226	1.00
42_R	70_A	1.223	1.00
39_E	42_R	1.220	1.00
371_V	376_E	1.219	1.00
256_E	259_K	1.211	1.00
351_G	399_D	1.211	1.00
382_K	385_R	1.205	1.00
376_E	380_T	1.204	1.00
243_V	246_L	1.200	1.00
81_V	173_I	1.199	1.00
69_N	78_G	1.197	1.00
213_K	216_E	1.182	1.00
212_D	218_V	1.182	1.00
295_F	303_K	1.177	1.00
39_E	43_Y	1.176	1.00
215_L	221_D	1.168	1.00
385_R	390_I	1.164	1.00
84_V	137_F	1.164	1.00
240_K	245_E	1.164	1.00
273_G	334_A	1.161	1.00
451_D	454_D	1.160	1.00
456_A	459_L	1.160	1.00
159_H	162_F	1.154	1.00
362_V	366_P	1.146	1.00
267_V	343_R	1.145	1.00
69_N	72_S	1.145	1.00
361_E	366_P	1.139	1.00
178_H	321_A	1.138	1.00
447_P	450_S	1.129	1.00
403_E	406_S	1.125	1.00
132_T	162_F	1.124	1.00
391_D	395_L	1.123	1.00
426_V	430_Y	1.122	1.00
425_K	428_S	1.118	1.00
455_D	458_P	1.118	1.00
449_N	452_N	1.117	1.00
98_L	109_T	1.108	1.00
96_L	100_K	1.107	1.00
117_M	120_H	1.107	1.00
239_R	242_Y	1.104	1.00
142_F	192_S	1.101	1.00
387_L	390_I	1.098	1.00
84_V	132_T	1.095	1.00
216_E	220_M	1.094	1.00
400_Y	408_L	1.092	1.00
92_Q	301_I	1.088	1.00
257_K	260_E	1.072	1.00
296_S	299_D	1.066	1.00
395_L	403_E	1.065	1.00
237_I	241_I	1.061	1.00
80_R	128_K	1.058	1.00
375_G	378_K	1.052	1.00
404_I	407_I	1.050	1.00
399_D	403_E	1.049	1.00
301_I	305_N	1.047	1.00
95_Y	109_T	1.044	1.00
371_V	377_V	1.039	1.00
255_D	258_V	1.037	1.00
371_V	375_G	1.037	1.00
252_S	284_R	1.035	1.00
232_A	235_F	1.034	1.00
252_S	255_D	1.033	1.00
332_T	336_P	1.032	1.00
398_R	401_T	1.031	1.00
441_S	445_G	1.026	1.00
400_Y	405_D	1.024	1.00
376_E	379_E	1.023	1.00
216_E	228_K	1.019	1.00
266_L	312_L	1.016	1.00
436_I	439_E	1.013	1.00
253_I	258_V	1.011	1.00
162_F	165_A	1.010	1.00
231_Y	234_D	1.004	1.00
62_T	66_I	1.003	1.00
458_P	461_E	1.003	1.00
236_K	241_I	1.002	1.00
405_D	408_L	1.001	1.00
43_Y	229_V	0.998	1.00
241_I	244_N	0.997	1.00
43_Y	227_G	0.994	1.00
361_E	364_I	0.986	1.00
387_L	391_D	0.986	1.00
377_V	384_V	0.983	1.00
425_K	432_N	0.981	1.00
382_K	387_L	0.980	1.00
388_K	392_E	0.974	1.00
361_E	365_F	0.970	1.00
264_V	329_V	0.968	1.00
396_I	399_D	0.967	1.00
302_D	305_N	0.967	1.00
250_E	255_D	0.966	1.00
299_D	303_K	0.966	1.00
453_V	457_I	0.965	1.00
443_I	447_P	0.963	1.00
138_I	192_S	0.961	1.00
187_L	190_G	0.960	1.00
245_E	249_D	0.957	1.00
113_G	116_D	0.954	1.00
164_R	168_Y	0.953	1.00
394_L	398_R	0.952	1.00
455_D	459_L	0.950	1.00
291_I	319_I	0.946	1.00
430_Y	434_C	0.945	1.00
385_R	389_T	0.945	1.00
420_F	424_K	0.944	1.00
378_K	381_M	0.943	1.00
179_L	183_D	0.935	1.00
383_R	387_L	0.931	1.00
264_V	312_L	0.931	1.00
362_V	369_G	0.926	1.00
264_V	331_I	0.925	1.00
421_V	424_K	0.916	1.00
173_I	205_V	0.916	1.00
384_V	389_T	0.910	1.00
391_D	394_L	0.902	1.00
373_N	380_T	0.901	1.00
417_N	421_V	0.897	1.00
430_Y	433_I	0.894	1.00
370_K	374_E	0.894	1.00
452_N	456_A	0.891	1.00
274_A	278_Y	0.890	1.00
256_E	260_E	0.889	1.00
424_K	428_S	0.889	1.00
174_F	181_G	0.886	1.00
70_A	168_Y	0.883	1.00
51_I	219_L	0.881	1.00
213_K	218_V	0.880	1.00
240_K	354_G	0.878	1.00
374_E	378_K	0.878	1.00
304_V	325_T	0.878	1.00
254_A	257_K	0.876	1.00
397_E	406_S	0.875	1.00
394_L	397_E	0.872	1.00
278_Y	314_V	0.872	1.00
380_T	387_L	0.869	1.00
380_T	388_K	0.869	1.00
274_A	290_L	0.868	1.00
451_D	455_D	0.867	1.00
459_L	463_E	0.862	1.00
270_T	273_G	0.862	1.00
456_A	460_T	0.860	1.00
237_I	245_E	0.859	1.00
383_R	388_K	0.859	1.00
454_D	458_P	0.858	1.00
449_N	453_V	0.858	1.00
259_K	286_L	0.857	1.00
280_K	284_R	0.855	1.00
379_E	384_V	0.854	1.00
432_N	436_I	0.853	1.00
380_T	390_I	0.848	1.00
433_I	436_I	0.848	1.00
261_G	264_V	0.847	1.00
120_H	123_P	0.846	1.00
364_I	368_S	0.846	1.00
327_F	331_I	0.845	1.00
462_E	465_I	0.843	1.00
336_P	343_R	0.842	1.00
444_L	448_P	0.842	1.00
328_D	331_I	0.842	1.00
83_H	98_L	0.842	1.00
399_D	405_D	0.841	1.00
299_D	302_D	0.839	1.00
386_K	390_I	0.838	1.00
201_G	204_I	0.836	1.00
241_I	245_E	0.836	1.00
382_K	388_K	0.835	1.00
380_T	385_R	0.835	1.00
214_G	217_R	0.834	1.00
160_Y	163_P	0.831	1.00
192_S	195_E	0.831	1.00
435_S	439_E	0.830	1.00
459_L	462_E	0.828	1.00
460_T	463_E	0.827	1.00
445_G	448_P	0.826	1.00
41_L	66_I	0.823	1.00
230_V	233_S	0.822	1.00
396_I	403_E	0.821	1.00
461_E	465_I	0.817	1.00
332_T	363_Y	0.815	1.00
443_I	446_F	0.815	1.00
227_G	234_D	0.815	1.00
112_I	297_K	0.813	1.00
448_P	452_N	0.813	1.00
160_Y	167_I	0.812	1.00
236_K	242_Y	0.809	1.00
263_R	310_A	0.809	1.00
448_P	451_D	0.807	1.00
275_I	292_H	0.806	1.00
219_L	222_K	0.806	1.00
395_L	404_I	0.804	1.00
412_L	415_I	0.803	1.00
397_E	403_E	0.803	1.00
40_T	63_L	0.801	1.00
457_I	461_E	0.799	1.00
162_F	167_I	0.799	1.00
383_R	386_K	0.797	1.00
64_T	205_V	0.794	1.00
365_F	368_S	0.794	1.00
266_L	331_I	0.794	1.00
47_G	203_P	0.793	1.00
385_R	388_K	0.791	1.00
452_N	455_D	0.790	1.00
67_L	171_I	0.787	1.00
61_T	94_L	0.787	1.00
212_D	219_L	0.783	1.00
118_D	122_S	0.782	1.00
218_V	223_L	0.782	1.00
393_S	396_I	0.781	1.00
395_L	398_R	0.779	1.00
225_K	228_K	0.777	1.00
251_I	284_R	0.776	1.00
227_G	231_Y	0.775	1.00
379_E	382_K	0.773	1.00
291_I	295_F	0.772	1.00
110_K	123_P	0.772	1.00
138_I	142_F	0.771	1.00
295_F	299_D	0.770	1.00
188_G	191_L	0.768	1.00
397_E	408_L	0.766	1.00
446_F	449_N	0.766	1.00
78_G	166_L	0.765	1.00
432_N	439_E	0.764	1.00
49_N	204_I	0.760	1.00
240_K	244_N	0.759	1.00
219_L	223_L	0.758	1.00
72_S	75_I	0.756	1.00
363_Y	368_S	0.755	1.00
460_T	464_A	0.751	1.00
391_D	399_D	0.751	1.00
215_L	222_K	0.751	1.00
161_E	164_R	0.750	1.00
240_K	246_L	0.750	1.00
35_K	39_E	0.748	1.00
242_Y	246_L	0.748	1.00
394_L	408_L	0.747	1.00
362_V	367_F	0.747	1.00
113_G	118_D	0.745	1.00
254_A	331_I	0.745	1.00
428_S	432_N	0.744	1.00
447_P	452_N	0.743	1.00
381_M	384_V	0.741	1.00
85_L	91_V	0.740	1.00
381_M	389_T	0.739	1.00
431_E	435_S	0.738	1.00
51_I	206_V	0.738	1.00
370_K	376_E	0.737	1.00
418_S	423_Y	0.736	1.00
70_A	171_I	0.735	1.00
405_D	409_A	0.734	1.00
423_Y	426_V	0.732	1.00
119_Y	122_S	0.730	1.00
447_P	451_D	0.730	1.00
226_S	234_D	0.730	1.00
410_R	413_S	0.730	1.00
230_V	234_D	0.727	1.00
398_R	403_E	0.726	1.00
461_E	464_A	0.726	1.00
455_D	461_E	0.725	1.00
395_L	400_Y	0.724	1.00
380_T	386_K	0.724	1.00
454_D	457_I	0.722	1.00
159_H	167_I	0.722	1.00
381_M	385_R	0.721	1.00
392_E	397_E	0.720	1.00
40_T	44_L	0.720	1.00
378_K	383_R	0.718	1.00
451_D	458_P	0.718	1.00
383_R	390_I	0.716	1.00
172_V	201_G	0.716	1.00
36_G	40_T	0.715	1.00
422_D	433_I	0.714	1.00
392_E	398_R	0.713	1.00
263_R	326_S	0.711	1.00
401_T	405_D	0.710	1.00
442_I	448_P	0.709	1.00
424_K	437_T	0.704	1.00
433_I	437_T	0.699	1.00
402_K	408_L	0.698	1.00
426_V	429_L	0.697	1.00
431_E	434_C	0.696	1.00
125_F	189_A	0.693	1.00
237_I	242_Y	0.692	1.00
70_A	74_N	0.692	1.00
392_E	399_D	0.690	1.00
111_S	114_A	0.689	1.00
29_H	100_K	0.688	1.00
172_V	194_I	0.688	1.00
374_E	377_V	0.687	1.00
51_I	211_I	0.687	1.00
422_D	425_K	0.685	1.00
113_G	117_M	0.685	1.00
194_I	198_S	0.684	1.00
332_T	343_R	0.684	1.00
400_Y	407_I	0.683	1.00
228_K	231_Y	0.682	1.00
239_R	243_V	0.682	1.00
444_L	447_P	0.681	1.00
231_Y	235_F	0.680	1.00
160_Y	165_A	0.678	1.00
424_K	432_N	0.677	1.00
450_S	457_I	0.677	1.00
238_D	243_V	0.674	1.00
243_V	248_K	0.672	1.00
441_S	444_L	0.672	1.00
391_D	397_E	0.671	1.00
102_A	105_G	0.671	1.00
67_L	71_V	0.670	1.00
336_P	340_L	0.668	1.00
40_T	52_L	0.668	1.00
178_H	342_Q	0.667	1.00
446_F	450_S	0.667	1.00
456_A	463_E	0.666	1.00
251_I	280_K	0.666	1.00
39_E	227_G	0.665	1.00
449_N	454_D	0.663	1.00
456_A	461_E	0.663	1.00
391_D	403_E	0.662	1.00
421_V	425_K	0.662	1.00
395_L	401_T	0.661	1.00
244_N	249_D	0.659	1.00
160_Y	166_L	0.656	1.00
435_S	443_I	0.655	1.00
404_I	408_L	0.654	1.00
419_V	422_D	0.654	1.00
118_D	121_D	0.653	1.00
375_G	388_K	0.651	1.00
31_F	101_Y	0.650	1.00
326_S	330_L	0.648	1.00
325_T	328_D	0.648	1.00
252_S	256_E	0.645	1.00
191_L	221_D	0.645	1.00
279_W	282_K	0.645	1.00
87_Y	321_A	0.644	1.00
381_M	386_K	0.643	1.00
251_I	277_A	0.637	1.00
418_S	422_D	0.637	1.00
245_E	248_K	0.637	1.00
423_Y	427_K	0.634	1.00
351_G	354_G	0.631	0.99
398_R	404_I	0.629	0.99
373_N	381_M	0.629	0.99
425_K	430_Y	0.625	0.99
223_L	226_S	0.623	0.99
402_K	406_S	0.623	0.99
423_Y	429_L	0.621	0.99
442_I	449_N	0.620	0.99
42_R	45_E	0.618	0.99
377_V	381_M	0.618	0.99
381_M	390_I	0.618	0.99
459_L	464_A	0.617	0.99
330_L	347_V	0.617	0.99
329_V	332_T	0.615	0.99
396_I	406_S	0.615	0.99
392_E	395_L	0.615	0.99
243_V	247_E	0.613	0.99
424_K	427_K	0.613	0.99
361_E	368_S	0.613	0.99
427_K	433_I	0.610	0.99
307_I	313_V	0.609	0.99
392_E	396_I	0.606	0.99
453_V	464_A	0.603	0.99
424_K	429_L	0.602	0.99
41_L	45_E	0.602	0.99
37_I	40_T	0.599	0.99
381_M	388_K	0.598	0.99
419_V	424_K	0.597	0.99
399_D	408_L	0.596	0.99
116_D	119_Y	0.596	0.99
41_L	44_L	0.596	0.99
450_S	453_V	0.595	0.99
227_G	233_S	0.593	0.99
455_D	462_E	0.591	0.99
162_F	166_L	0.589	0.99
252_S	258_V	0.589	0.99
393_S	403_E	0.588	0.99
242_Y	354_G	0.587	0.99
443_I	451_D	0.586	0.99
392_E	403_E	0.584	0.99
449_N	463_E	0.584	0.99
406_S	409_A	0.582	0.99
438_R	441_S	0.582	0.99
279_W	283_E	0.581	0.99
378_K	387_L	0.579	0.99
458_P	463_E	0.578	0.99
223_L	228_K	0.577	0.99
398_R	408_L	0.577	0.99
228_K	233_S	0.576	0.99
273_G	276_E	0.573	0.99
424_K	434_C	0.573	0.99
38_E	42_R	0.572	0.99
373_N	379_E	0.571	0.99
162_F	168_Y	0.568	0.99
401_T	404_I	0.565	0.99
457_I	460_T	0.565	0.99
198_S	202_V	0.565	0.99
443_I	455_D	0.564	0.99
96_L	99_K	0.564	0.99
84_V	174_F	0.564	0.99
422_D	427_K	0.562	0.99
277_A	333_E	0.562	0.99
450_S	456_A	0.562	0.99
90_I	322_G	0.561	0.99
454_D	459_L	0.561	0.99
450_S	455_D	0.561	0.99
433_I	439_E	0.560	0.99
168_Y	202_V	0.559	0.99
379_E	383_R	0.559	0.99
254_A	258_V	0.558	0.99
213_K	219_L	0.557	0.99
438_R	442_I	0.557	0.99
440_T	445_G	0.557	0.99
34_R	37_I	0.557	0.99
395_L	405_D	0.554	0.99
40_T	43_Y	0.552	0.99
224_G	231_Y	0.552	0.99
457_I	465_I	0.551	0.99
86_P	180_L	0.550	0.99
397_E	402_K	0.548	0.99
68_A	105_G	0.546	0.99
397_E	405_D	0.545	0.99
400_Y	406_S	0.545	0.99
53_K	230_V	0.544	0.98
282_K	288_P	0.543	0.98
429_L	433_I	0.543	0.98
397_E	404_I	0.543	0.98
371_V	380_T	0.543	0.98
446_F	452_N	0.542	0.98
393_S	399_D	0.542	0.98
391_D	396_I	0.541	0.98
440_T	443_I	0.541	0.98
238_D	246_L	0.540	0.98
439_E	443_I	0.540	0.98
446_F	451_D	0.540	0.98
452_N	457_I	0.539	0.98
456_A	462_E	0.539	0.98
427_K	431_E	0.537	0.98
242_Y	247_E	0.536	0.98
327_F	330_L	0.536	0.98
428_S	433_I	0.536	0.98
439_E	451_D	0.534	0.98
168_Y	171_I	0.533	0.98
393_S	397_E	0.532	0.98
436_I	440_T	0.532	0.98
460_T	465_I	0.531	0.98
425_K	429_L	0.530	0.98
422_D	426_V	0.529	0.98
451_D	459_L	0.529	0.98
95_Y	131_V	0.527	0.98
397_E	400_Y	0.525	0.98
426_V	432_N	0.525	0.98
399_D	407_I	0.524	0.98
391_D	400_Y	0.524	0.98
274_A	314_V	0.524	0.98
441_S	446_F	0.523	0.98
422_D	429_L	0.523	0.98
444_L	450_S	0.522	0.98
443_I	448_P	0.521	0.98
226_S	232_A	0.521	0.98
327_F	332_T	0.520	0.98
425_K	437_T	0.520	0.98
240_K	243_V	0.520	0.98
360_G	363_Y	0.520	0.98
281_L	312_L	0.519	0.98
436_I	442_I	0.518	0.98
320_E	339_N	0.518	0.98
419_V	423_Y	0.518	0.98
445_G	453_V	0.518	0.98
97_K	101_Y	0.518	0.98
434_C	437_T	0.517	0.98
253_I	260_E	0.517	0.98
361_E	367_F	0.516	0.98
276_E	280_K	0.516	0.98
440_T	447_P	0.515	0.98
446_F	454_D	0.514	0.98
114_A	117_M	0.514	0.98
227_G	232_A	0.513	0.98
439_E	446_F	0.512	0.98
395_L	406_S	0.512	0.98
265_L	315_S	0.512	0.98
93_D	324_D	0.511	0.98
449_N	457_I	0.511	0.98
239_R	246_L	0.510	0.98
293_S	319_I	0.508	0.98
373_N	383_R	0.508	0.98
43_Y	50_V	0.508	0.98
321_A	342_Q	0.505	0.98
33_E	37_I	0.504	0.98
216_E	221_D	0.503	0.97
370_K	375_G	0.501	0.97
442_I	445_G	0.500	0.97

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4pxaA	1	0.7223	100	0.406	Contact Map
4ljyA	1	0.7495	100	0.41	Contact Map
4nhoA	1	0.7126	100	0.413	Contact Map
2db3A	1	0.7146	100	0.415	Contact Map
4d25A	1	0.7146	100	0.419	Contact Map
4c9bA	1	0.7146	100	0.422	Contact Map
3peyA	1	0.7204	100	0.423	Contact Map
3fmpB	1	0.4136	100	0.425	Contact Map
4ct4B	1	0.7087	100	0.425	Contact Map
1s2mA	1	0.7087	100	0.426	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0131 seconds.