Q97Y77 - SULSO - GREMLIN Contacts

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Q97Y77 - Uncharacterized protein

UniProt:	Q97Y77	Sequences: MPKASLPYYSEVLIGVRKCMNVLVTKSLVEVRETEDYSLLFFLGAFFGAFLVLFEARIANCCTFGHILSGNLQMVISSFAFLIAVMLGVWITLSLVLRLRINSIGYR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	107 (93)
Sequences:	144 (122)
Seq/√Len:	12.6

SULSO - Q97Y77

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
67_I	85_V	3.167	0.97
8_Y	11_E	3.108	0.97
63_T	68_L	3.029	0.96
71_N	79_F	2.430	0.89
13_L	16_V	2.364	0.87
27_S	34_T	2.152	0.82
38_S	76_I	2.039	0.78
52_V	63_T	1.974	0.76
14_I	18_K	1.919	0.73
67_I	89_V	1.891	0.72
27_S	97_L	1.846	0.70
81_F	89_V	1.830	0.70
11_E	15_G	1.826	0.70
47_F	99_L	1.742	0.66
44_G	96_V	1.730	0.65
14_I	43_L	1.695	0.64
67_I	81_F	1.651	0.61
53_L	60_N	1.598	0.59
33_E	98_R	1.581	0.58
81_F	85_V	1.571	0.57
68_L	79_F	1.552	0.56
26_K	98_R	1.550	0.56
42_F	63_T	1.521	0.55
15_G	80_A	1.465	0.52
28_L	83_I	1.454	0.51
93_L	97_L	1.335	0.45
37_Y	40_L	1.310	0.44
72_L	79_F	1.295	0.43
30_E	41_F	1.276	0.42
49_A	60_N	1.274	0.42
75_V	87_L	1.271	0.42
79_F	91_I	1.261	0.42
42_F	53_L	1.251	0.41
24_V	78_S	1.237	0.40
56_A	66_H	1.178	0.38
63_T	85_V	1.155	0.36
15_G	18_K	1.150	0.36
35_E	40_L	1.113	0.34
53_L	58_I	1.102	0.34
14_I	39_L	1.086	0.33
60_N	68_L	1.071	0.33
10_S	58_I	1.070	0.32
26_K	80_A	1.069	0.32
19_C	96_V	1.052	0.32
92_T	99_L	1.048	0.32
46_F	53_L	1.044	0.31
11_E	18_K	1.036	0.31
27_S	41_F	0.995	0.29
50_F	53_L	0.985	0.29
46_F	77_S	0.981	0.29
74_M	85_V	0.971	0.28
45_A	75_V	0.967	0.28
63_T	82_L	0.948	0.27
60_N	74_M	0.934	0.27
58_I	84_A	0.921	0.26
12_V	21_N	0.909	0.26
17_R	90_W	0.908	0.26
8_Y	15_G	0.898	0.25
22_V	95_L	0.887	0.25
90_W	93_L	0.883	0.25
75_V	94_S	0.882	0.25
84_A	87_L	0.868	0.24
24_V	83_I	0.865	0.24
92_T	95_L	0.862	0.24
23_L	95_L	0.862	0.24
24_V	39_L	0.857	0.24
77_S	94_S	0.840	0.23
17_R	47_F	0.835	0.23
12_V	43_L	0.826	0.23
63_T	67_I	0.818	0.22
36_D	40_L	0.818	0.22
58_I	78_S	0.814	0.22
55_E	70_G	0.813	0.22
67_I	74_M	0.810	0.22
75_V	96_V	0.795	0.21
55_E	66_H	0.790	0.21
31_V	39_L	0.785	0.21
19_C	67_I	0.785	0.21
34_T	93_L	0.784	0.21
52_V	74_M	0.780	0.21
16_V	19_C	0.771	0.21
60_N	80_A	0.761	0.20
66_H	70_G	0.755	0.20
11_E	19_C	0.747	0.20
7_P	10_S	0.744	0.20
43_L	95_L	0.742	0.20
8_Y	12_V	0.730	0.19
15_G	19_C	0.728	0.19
7_P	12_V	0.726	0.19
21_N	53_L	0.711	0.19
55_E	61_C	0.708	0.19
27_S	33_E	0.692	0.18
46_F	68_L	0.686	0.18
19_C	72_L	0.685	0.18
78_S	94_S	0.684	0.18
26_K	36_D	0.683	0.18
20_M	83_I	0.677	0.18
43_L	51_L	0.676	0.18
29_V	71_N	0.673	0.18
63_T	74_M	0.667	0.17
7_P	16_V	0.657	0.17
68_L	91_I	0.640	0.17
54_F	91_I	0.623	0.16
26_K	97_L	0.622	0.16
32_R	51_L	0.618	0.16
68_L	74_M	0.615	0.16
34_T	97_L	0.615	0.16
26_K	44_G	0.610	0.16
31_V	54_F	0.606	0.16
30_E	37_Y	0.596	0.15
55_E	64_F	0.596	0.15
72_L	82_L	0.592	0.15
78_S	98_R	0.590	0.15
17_R	53_L	0.588	0.15
52_V	77_S	0.585	0.15
52_V	60_N	0.582	0.15
11_E	16_V	0.582	0.15
63_T	89_V	0.581	0.15
86_M	93_L	0.577	0.15
26_K	31_V	0.573	0.15
63_T	81_F	0.570	0.15
76_I	91_I	0.563	0.14
68_L	94_S	0.558	0.14
82_L	91_I	0.548	0.14
8_Y	89_V	0.545	0.14
45_A	98_R	0.545	0.14
28_L	43_L	0.545	0.14
17_R	21_N	0.543	0.14
41_F	75_V	0.541	0.14
31_V	51_L	0.532	0.14
89_V	93_L	0.529	0.14
76_I	80_A	0.525	0.14
92_T	96_V	0.525	0.14
31_V	37_Y	0.520	0.13
42_F	76_I	0.517	0.13
60_N	79_F	0.517	0.13
82_L	89_V	0.516	0.13
32_R	80_A	0.510	0.13
9_Y	13_L	0.510	0.13
93_L	96_V	0.500	0.13

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2xq2A	2	0.8972	13.5	0.939	Contact Map
3dh4A	3	0.8972	12.4	0.94	Contact Map
1fftB	1	0.4112	10.5	0.942	Contact Map
2k1kA	2	0.3458	7.6	0.946	Contact Map
4qi1A	3	0.271	5.1	0.95	Contact Map
2ks1B	1	0.4112	4.4	0.951	Contact Map
1q90G	1	0.2617	3.8	0.953	Contact Map
3dwlA	1	0.4112	3.3	0.955	Contact Map
4b1yB	1	0.4112	2.5	0.957	Contact Map
2llmA	1	0.4019	2.4	0.957	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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