Q97Y64 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97Y64 - Second ORF in transposon ISC1225

UniProt:	Q97Y64	Sequences: MSPQTVRNYVEEQGTEVIEKLLESMRRISMEILKGVKEVDISIDWTTKTWYGKPVEGLGSSAKGNSWNYATAITKYQNMVLLLAFVPQVNGMSKDEIVKLLMEQIVGMGLKVGLVTLDAGFYTVEVLKFISQFKFVIGVPVGDVKIYEEFDGEYTTNSKRYKKEEQVKFRLLVYGKEIVKKRKKTVVYFARATNLDLPKREVLKLYNKVRSPIETSYRNIKAFLPFTSSTKFIFRELIFVLAMIFYSLYTVFKNVMTREEFRLLLILCFLDDLSDLKDFIFNLEETLINTIDLFLWR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	297 (261)
Sequences:	188 (127)
Seq/√Len:	7.8

HALSA - Q9HHP9 O51989 O51959
SULSO - Q97Y64 Q97UW1 Q97TV3 Q97YD0 Q97Y40 Q97XT0 Q97XW2 Q97WW6 Q97YS0 Q7LXX4 Q97UV3 Q97V50

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
71_T	217_Y	5.483	1.00
117_L	216_S	4.430	0.99
112_V	136_V	4.152	0.98
193_T	229_S	3.138	0.89
43_I	98_V	3.125	0.89
46_T	221_K	3.106	0.89
7_R	234_F	2.863	0.84
46_T	59_G	2.810	0.83
196_D	208_K	2.789	0.83
22_L	26_R	2.738	0.81
119_A	138_G	2.598	0.78
237_L	241_L	2.554	0.76
105_I	115_V	2.479	0.74
82_L	217_Y	2.379	0.71
72_A	84_A	2.234	0.66
217_Y	227_T	2.202	0.65
193_T	211_S	2.145	0.62
118_D	210_R	2.139	0.62
223_F	246_Y	2.121	0.62
221_K	246_Y	2.060	0.59
50_W	247_S	2.036	0.58
88_Q	116_T	2.019	0.58
98_V	101_L	2.003	0.57
59_G	229_S	1.999	0.57
21_L	25_M	1.988	0.56
78_N	128_K	1.976	0.56
47_T	68_N	1.953	0.55
120_G	248_L	1.927	0.54
245_F	256_M	1.921	0.54
264_L	268_C	1.917	0.53
45_W	112_V	1.883	0.52
215_T	218_R	1.861	0.51
191_R	194_N	1.829	0.50
70_A	101_L	1.814	0.49
122_Y	139_V	1.813	0.49
41_I	105_I	1.805	0.49
193_T	246_Y	1.761	0.47
67_W	217_Y	1.734	0.46
44_D	214_E	1.716	0.45
14_G	18_I	1.670	0.43
88_Q	98_V	1.663	0.43
206_Y	213_I	1.663	0.43
193_T	215_T	1.640	0.42
80_V	218_R	1.632	0.42
112_V	217_Y	1.626	0.42
82_L	243_M	1.602	0.41
72_A	105_I	1.593	0.40
71_T	213_I	1.539	0.38
105_I	135_F	1.532	0.38
114_L	222_A	1.527	0.38
210_R	214_E	1.462	0.35
18_I	21_L	1.458	0.35
72_A	256_M	1.449	0.35
46_T	229_S	1.439	0.35
19_E	23_E	1.428	0.34
10_V	18_I	1.416	0.34
225_P	238_I	1.412	0.34
239_F	246_Y	1.412	0.34
47_T	120_G	1.400	0.33
46_T	203_L	1.365	0.32
70_A	97_I	1.363	0.32
118_D	214_E	1.358	0.32
50_W	230_T	1.353	0.31
229_S	239_F	1.346	0.31
112_V	220_I	1.344	0.31
110_L	115_V	1.334	0.31
61_S	117_L	1.315	0.30
206_Y	214_E	1.307	0.30
46_T	80_V	1.299	0.30
168_K	202_V	1.293	0.29
61_S	234_F	1.291	0.29
164_E	231_K	1.289	0.29
262_R	265_L	1.284	0.29
61_S	74_T	1.276	0.29
221_K	229_S	1.276	0.29
114_L	197_L	1.247	0.28
93_S	123_T	1.240	0.28
234_F	238_I	1.235	0.27
265_L	269_F	1.229	0.27
152_G	168_K	1.229	0.27
26_R	130_I	1.225	0.27
264_L	267_L	1.223	0.27
253_K	257_T	1.213	0.27
261_F	264_L	1.191	0.26
221_K	239_F	1.185	0.26
117_L	122_Y	1.176	0.26
70_A	135_F	1.176	0.26
44_D	210_R	1.174	0.26
109_G	237_L	1.173	0.26
6_V	225_P	1.172	0.25
226_F	247_S	1.169	0.25
26_R	92_M	1.163	0.25
117_L	192_A	1.158	0.25
4_Q	7_R	1.150	0.25
121_F	227_T	1.140	0.25
80_V	113_G	1.140	0.25
10_V	65_N	1.139	0.24
215_T	248_L	1.126	0.24
52_G	122_Y	1.125	0.24
79_M	113_G	1.123	0.24
9_Y	218_R	1.119	0.24
67_W	223_F	1.113	0.24
217_Y	228_S	1.103	0.23
60_S	66_S	1.096	0.23
74_T	249_Y	1.093	0.23
211_S	229_S	1.092	0.23
66_S	211_S	1.091	0.23
43_I	70_A	1.087	0.23
191_R	229_S	1.086	0.23
122_Y	215_T	1.085	0.23
81_L	143_D	1.082	0.23
127_L	135_F	1.071	0.23
44_D	118_D	1.070	0.22
173_V	233_I	1.054	0.22
222_A	245_F	1.045	0.22
84_A	102_M	1.041	0.22
215_T	251_V	1.038	0.22
194_N	239_F	1.037	0.22
64_G	262_R	1.035	0.21
147_Y	150_F	1.035	0.21
82_L	122_Y	1.035	0.21
92_M	136_V	1.034	0.21
86_V	93_S	1.033	0.21
89_V	248_L	1.030	0.21
4_Q	11_E	1.029	0.21
82_L	216_S	1.028	0.21
41_I	75_K	1.028	0.21
259_E	262_R	1.025	0.21
110_L	133_F	1.020	0.21
149_E	153_E	1.018	0.21
33_L	152_G	1.017	0.21
72_A	247_S	1.016	0.21
44_D	206_Y	1.013	0.21
69_Y	122_Y	1.011	0.21
152_G	164_E	1.006	0.21
14_G	115_V	0.999	0.21
250_T	253_K	0.999	0.21
138_G	253_K	0.994	0.20
120_G	140_P	0.979	0.20
260_E	263_L	0.974	0.20
49_T	245_F	0.974	0.20
8_N	12_E	0.972	0.20
125_E	162_K	0.970	0.20
121_F	214_E	0.969	0.20
122_Y	248_L	0.965	0.20
24_S	126_V	0.964	0.20
47_T	66_S	0.960	0.20
22_L	25_M	0.958	0.19
84_A	117_L	0.954	0.19
230_T	237_L	0.954	0.19
101_L	220_I	0.949	0.19
52_G	230_T	0.948	0.19
138_G	227_T	0.946	0.19
235_R	249_Y	0.944	0.19
62_A	69_Y	0.940	0.19
65_N	130_I	0.940	0.19
6_V	19_E	0.938	0.19
135_F	188_Y	0.938	0.19
207_N	247_S	0.920	0.19
108_M	153_E	0.918	0.18
71_T	239_F	0.916	0.18
17_V	231_K	0.914	0.18
21_L	26_R	0.908	0.18
136_V	166_Q	0.905	0.18
69_Y	143_D	0.903	0.18
113_G	211_S	0.901	0.18
95_D	129_F	0.898	0.18
78_N	85_F	0.894	0.18
40_D	116_T	0.892	0.18
52_G	69_Y	0.891	0.18
16_E	158_S	0.890	0.18
101_L	194_N	0.887	0.18
110_L	155_T	0.887	0.18
220_I	239_F	0.883	0.18
42_S	126_V	0.882	0.18
246_Y	253_K	0.873	0.17
5_T	42_S	0.871	0.17
229_S	246_Y	0.870	0.17
120_G	183_K	0.868	0.17
69_Y	206_Y	0.864	0.17
61_S	66_S	0.863	0.17
135_F	231_K	0.861	0.17
131_S	259_E	0.858	0.17
76_Y	240_V	0.858	0.17
101_L	246_Y	0.857	0.17
262_R	267_L	0.857	0.17
9_Y	97_I	0.855	0.17
4_Q	25_M	0.852	0.17
45_W	88_Q	0.852	0.17
194_N	217_Y	0.851	0.17
63_K	164_E	0.850	0.17
23_E	26_R	0.845	0.17
135_F	253_K	0.842	0.17
28_I	148_E	0.840	0.17
26_R	102_M	0.829	0.16
42_S	171_L	0.828	0.16
25_M	104_Q	0.827	0.16
66_S	250_T	0.818	0.16
25_M	173_V	0.817	0.16
83_L	90_N	0.815	0.16
207_N	212_P	0.813	0.16
98_V	105_I	0.807	0.16
76_Y	253_K	0.806	0.16
257_T	263_L	0.806	0.16
117_L	120_G	0.805	0.16
127_L	137_I	0.804	0.16
207_N	226_F	0.801	0.16
99_K	166_Q	0.797	0.16
89_V	102_M	0.796	0.16
101_L	105_I	0.796	0.16
215_T	219_N	0.794	0.16
69_Y	237_L	0.793	0.16
212_P	242_A	0.792	0.16
38_E	165_E	0.791	0.16
42_S	75_K	0.790	0.16
144_V	244_I	0.789	0.16
88_Q	224_L	0.788	0.15
10_V	261_F	0.785	0.15
59_G	218_R	0.782	0.15
70_A	126_V	0.779	0.15
174_Y	207_N	0.775	0.15
15_T	27_R	0.772	0.15
21_L	148_E	0.772	0.15
214_E	235_R	0.770	0.15
253_K	263_L	0.764	0.15
99_K	229_S	0.757	0.15
119_A	236_E	0.754	0.15
84_A	187_V	0.754	0.15
130_I	133_F	0.751	0.15
112_V	233_I	0.750	0.15
54_P	234_F	0.745	0.15
7_R	258_R	0.745	0.15
105_I	235_R	0.734	0.14
207_N	231_K	0.732	0.14
121_F	206_Y	0.732	0.14
9_Y	231_K	0.731	0.14
99_K	158_S	0.731	0.14
43_I	227_T	0.728	0.14
80_V	88_Q	0.728	0.14
80_V	211_S	0.727	0.14
67_W	106_V	0.723	0.14
71_T	240_V	0.719	0.14
194_N	223_F	0.719	0.14
55_V	58_L	0.718	0.14
81_L	166_Q	0.716	0.14
4_Q	137_I	0.712	0.14
21_L	237_L	0.711	0.14
19_E	81_L	0.710	0.14
157_N	269_F	0.708	0.14
127_L	206_Y	0.705	0.14
49_T	187_V	0.705	0.14
43_I	194_N	0.705	0.14
133_F	240_V	0.704	0.14
81_L	167_V	0.704	0.14
23_E	225_P	0.698	0.14
36_V	202_V	0.696	0.14
152_G	261_F	0.695	0.14
260_E	265_L	0.693	0.14
102_M	168_K	0.693	0.14
22_L	28_I	0.690	0.14
122_Y	140_P	0.687	0.13
130_I	238_I	0.685	0.13
119_A	157_N	0.684	0.13
18_I	22_L	0.678	0.13
37_K	111_K	0.677	0.13
186_V	189_F	0.675	0.13
57_G	234_F	0.673	0.13
121_F	213_I	0.673	0.13
163_K	168_K	0.668	0.13
44_D	121_F	0.667	0.13
78_N	132_Q	0.667	0.13
127_L	192_A	0.663	0.13
6_V	122_Y	0.663	0.13
42_S	202_V	0.661	0.13
83_L	190_A	0.656	0.13
105_I	112_V	0.656	0.13
126_V	213_I	0.651	0.13
206_Y	210_R	0.651	0.13
234_F	248_L	0.650	0.13
192_A	237_L	0.650	0.13
52_G	81_L	0.648	0.13
80_V	139_V	0.648	0.13
231_K	269_F	0.647	0.13
16_E	149_E	0.647	0.13
98_V	194_N	0.646	0.13
7_R	19_E	0.646	0.13
7_R	13_Q	0.644	0.13
98_V	135_F	0.641	0.13
101_L	135_F	0.636	0.13
113_G	242_A	0.633	0.12
7_R	216_S	0.632	0.12
112_V	155_T	0.632	0.12
23_E	120_G	0.631	0.12
86_V	100_L	0.630	0.12
205_L	218_R	0.629	0.12
83_L	147_Y	0.623	0.12
74_T	88_Q	0.622	0.12
18_I	69_Y	0.621	0.12
126_V	217_Y	0.621	0.12
44_D	213_I	0.617	0.12
88_Q	236_E	0.611	0.12
86_V	215_T	0.610	0.12
111_K	134_K	0.608	0.12
126_V	215_T	0.607	0.12
36_V	109_G	0.607	0.12
128_K	136_V	0.605	0.12
47_T	248_L	0.604	0.12
138_G	206_Y	0.602	0.12
26_R	35_G	0.601	0.12
139_V	202_V	0.600	0.12
74_T	84_A	0.600	0.12
40_D	244_I	0.595	0.12
116_T	216_S	0.594	0.12
55_V	144_V	0.593	0.12
174_Y	203_L	0.592	0.12
201_E	254_N	0.590	0.12
68_N	220_I	0.589	0.12
52_G	117_L	0.588	0.12
207_N	259_E	0.586	0.12
117_L	211_S	0.586	0.12
88_Q	126_V	0.585	0.12
127_L	136_V	0.585	0.12
46_T	220_I	0.584	0.12
84_A	230_T	0.583	0.12
7_R	17_V	0.581	0.12
101_L	235_R	0.580	0.12
69_Y	246_Y	0.576	0.11
254_N	258_R	0.571	0.11
65_N	82_L	0.571	0.11
82_L	117_L	0.570	0.11
47_T	71_T	0.570	0.11
30_M	196_D	0.568	0.11
62_A	217_Y	0.568	0.11
50_W	77_Q	0.567	0.11
87_P	135_F	0.567	0.11
73_I	143_D	0.566	0.11
66_S	223_F	0.565	0.11
20_K	24_S	0.564	0.11
83_L	248_L	0.563	0.11
138_G	199_K	0.558	0.11
69_Y	175_G	0.555	0.11
167_V	173_V	0.555	0.11
139_V	226_F	0.551	0.11
181_K	246_Y	0.549	0.11
18_I	25_M	0.547	0.11
77_Q	131_S	0.545	0.11
62_A	225_P	0.545	0.11
127_L	130_I	0.545	0.11
237_L	245_F	0.544	0.11
25_M	240_V	0.544	0.11
33_L	104_Q	0.544	0.11
232_F	247_S	0.544	0.11
54_P	77_Q	0.542	0.11
189_F	231_K	0.541	0.11
153_E	196_D	0.540	0.11
40_D	95_D	0.538	0.11
70_A	217_Y	0.538	0.11
43_I	180_K	0.538	0.11
110_L	196_D	0.537	0.11
13_Q	28_I	0.536	0.11
7_R	68_N	0.535	0.11
29_S	251_V	0.535	0.11
211_S	223_F	0.533	0.11
212_P	249_Y	0.533	0.11
118_D	206_Y	0.531	0.11
42_S	191_R	0.531	0.11
148_E	251_V	0.529	0.11
7_R	61_S	0.528	0.11
215_T	233_I	0.523	0.11
148_E	183_K	0.522	0.11
96_E	219_N	0.522	0.11
58_L	244_I	0.521	0.11
78_N	245_F	0.520	0.11
123_T	230_T	0.520	0.11
65_N	177_E	0.518	0.11
27_R	56_E	0.518	0.11
252_F	255_V	0.517	0.11
228_S	240_V	0.517	0.11
260_E	264_L	0.516	0.11
242_A	259_E	0.515	0.11
63_K	95_D	0.515	0.11
11_E	172_L	0.514	0.11
26_R	217_Y	0.512	0.10
13_Q	158_S	0.509	0.10
20_K	38_E	0.509	0.10
136_V	206_Y	0.506	0.10
51_Y	69_Y	0.505	0.10
201_E	204_K	0.503	0.10
164_E	172_L	0.501	0.10
10_V	77_Q	0.500	0.10
55_V	112_V	0.500	0.10
110_L	119_A	0.500	0.10

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1musA	2	0.9158	99.2	0.845	Contact Map
4xb4A	1	0.3333	8.4	0.971	Contact Map
3flkA	3	0.1987	7.5	0.972	Contact Map
2vxzA	1	0.3737	7.2	0.972	Contact Map
2ia0A	2	0.404	6.8	0.972	Contact Map
1cxqA	2	0.4613	6.4	0.972	Contact Map
4mq3A	1	0.4141	5.6	0.973	Contact Map
3c57A	2	0.0774	5.1	0.974	Contact Map
1je8A	2	0.1145	5	0.974	Contact Map
2rnjA	1	0.1178	5	0.974	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0084 seconds.