Q97Y59 - SULSO - GREMLIN Contacts

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Q97Y59 - Transposon ISC1190

UniProt:	Q97Y59	Sequences: MEAPVAGIDVSKDKLVVYFQGKYYEFQNNKQGFEGVKQVLPKGCKVAIESTGIYHINLAKYLGKEYDVRIINPLILKKFKDIRGKKSDKNDAKKLAELVISMGSEFTTSEAKELTSQWDFITRSIVRVKNRLRRDLILLGYKDSLSKKNLNEVLRGEDNIVLSEVRFLLDELERLEVRKREIEEELEDLVPKDSLIFTIPGIGRTLGCIILARVGDVKRFGDKKRFVAYCGLDPLVESSGKSVVSRGISRRGDAVLRRAFYLAALTAIKVNPIIKRFYEEHKGNLKGKKLITACARKLAVITWAVLYYNKPFDASE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	316 (308)
Sequences:	4572 (3476)
Seq/√Len:	198.1

SULSO - Q97Y59 Q97XK2 Q97VS0 Q97WC0 Q97WZ5 Q97X07 Q97ZN4 Q97X26 Q97UF7 Q97X29 Q97X12 Q97UQ6 Q97YE1 Q97XM7 Q97UU8 Q97Y06 Q97VB2 Q97Z62 Q97XR9 Q97WY7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
47_A	99_V	4.273	1.00
125_I	176_E	3.086	1.00
195_L	311_P	2.663	1.00
18_Y	92_A	2.659	1.00
163_S	185_E	2.613	1.00
226_F	299_A	2.575	1.00
167_F	178_R	2.493	1.00
170_D	178_R	2.447	1.00
281_H	284_N	2.428	1.00
76_L	95_L	2.360	1.00
124_S	127_R	2.250	1.00
47_A	95_L	2.179	1.00
230_C	256_L	2.165	1.00
214_V	226_F	2.117	1.00
118_W	122_T	2.106	1.00
46_V	66_Y	2.098	1.00
210_I	302_T	2.058	1.00
78_K	81_D	2.029	1.00
275_K	279_E	2.025	1.00
221_G	225_R	1.990	1.00
87_S	236_V	1.985	1.00
296_R	300_V	1.985	1.00
198_T	311_P	1.974	1.00
125_I	179_K	1.966	1.00
248_I	292_T	1.938	1.00
118_W	183_E	1.920	1.00
174_R	178_R	1.908	1.00
124_S	131_R	1.883	1.00
146_S	149_N	1.872	1.00
14_K	25_E	1.858	1.00
195_L	305_V	1.856	1.00
238_S	243_V	1.841	1.00
222_D	225_R	1.822	1.00
8_I	36_V	1.812	1.00
149_N	152_E	1.792	1.00
171_E	178_R	1.787	1.00
126_V	130_N	1.787	1.00
202_I	207_G	1.784	1.00
286_K	289_K	1.772	1.00
171_E	174_R	1.762	1.00
8_I	15_L	1.741	1.00
6_A	19_F	1.735	1.00
220_F	229_Y	1.729	1.00
119_D	258_R	1.711	1.00
199_I	302_T	1.700	1.00
185_E	188_D	1.697	1.00
310_K	313_D	1.694	1.00
124_S	171_E	1.692	1.00
45_K	69_R	1.676	1.00
125_I	172_L	1.672	1.00
121_I	179_K	1.670	1.00
116_S	213_R	1.662	1.00
230_C	299_A	1.659	1.00
132_L	172_L	1.628	1.00
196_I	302_T	1.605	1.00
48_I	68_V	1.590	1.00
232_L	295_A	1.584	1.00
305_V	311_P	1.567	1.00
97_E	101_S	1.559	1.00
77_K	80_K	1.547	1.00
17_V	36_V	1.533	1.00
304_A	308_Y	1.530	1.00
280_E	284_N	1.528	1.00
150_L	153_V	1.520	1.00
143_D	153_V	1.514	1.00
206_L	259_A	1.512	1.00
209_I	259_A	1.490	1.00
274_I	301_I	1.465	1.00
122_T	125_I	1.455	1.00
197_F	204_R	1.451	1.00
11_S	16_V	1.447	1.00
8_I	58_L	1.445	1.00
60_K	109_S	1.436	1.00
146_S	157_E	1.435	1.00
29_N	32_G	1.424	1.00
195_L	198_T	1.421	1.00
274_I	294_C	1.418	1.00
190_V	197_F	1.412	1.00
13_D	241_K	1.400	1.00
180_R	183_E	1.398	1.00
285_L	289_K	1.397	1.00
153_V	156_G	1.395	1.00
132_L	165_V	1.394	1.00
262_L	265_L	1.384	1.00
183_E	186_L	1.379	1.00
143_D	146_S	1.376	1.00
146_S	153_V	1.376	1.00
199_I	305_V	1.374	1.00
149_N	153_V	1.370	1.00
153_V	157_E	1.363	1.00
277_F	297_K	1.361	1.00
151_N	155_R	1.358	1.00
145_L	153_V	1.357	1.00
61_Y	64_K	1.355	1.00
16_V	25_E	1.352	1.00
268_I	278_Y	1.351	1.00
278_Y	294_C	1.345	1.00
85_K	236_V	1.339	1.00
145_L	149_N	1.339	1.00
18_Y	93_K	1.330	1.00
48_I	59_A	1.330	1.00
146_S	151_N	1.329	1.00
122_T	179_K	1.328	1.00
170_D	174_R	1.321	1.00
146_S	156_G	1.318	1.00
279_E	283_G	1.309	1.00
264_A	295_A	1.305	1.00
150_L	157_E	1.302	1.00
119_D	255_V	1.295	1.00
264_A	298_L	1.294	1.00
154_L	157_E	1.294	1.00
24_Y	39_V	1.292	1.00
172_L	176_E	1.279	1.00
167_F	181_E	1.271	1.00
170_D	177_V	1.264	1.00
147_K	151_N	1.261	1.00
118_W	205_T	1.244	1.00
278_Y	290_L	1.229	1.00
124_S	128_V	1.228	1.00
125_I	129_K	1.226	1.00
227_V	233_D	1.222	1.00
188_D	192_K	1.221	1.00
146_S	155_R	1.216	1.00
264_A	294_C	1.216	1.00
303_W	307_Y	1.206	1.00
146_S	150_L	1.184	1.00
149_N	156_G	1.184	1.00
47_A	71_I	1.182	1.00
40_L	46_V	1.181	1.00
227_V	296_R	1.176	1.00
8_I	17_V	1.175	1.00
128_V	131_R	1.169	1.00
261_Y	295_A	1.161	1.00
11_S	14_K	1.155	1.00
258_R	262_L	1.154	1.00
149_N	154_L	1.149	1.00
202_I	206_L	1.134	1.00
272_P	276_R	1.132	1.00
213_R	253_D	1.131	1.00
206_L	263_A	1.127	1.00
169_L	173_E	1.123	1.00
7_G	96_A	1.122	1.00
199_I	298_L	1.111	1.00
117_Q	121_I	1.107	1.00
282_K	287_G	1.106	1.00
27_Q	32_G	1.102	1.00
149_N	157_E	1.100	1.00
118_W	179_K	1.099	1.00
120_F	131_R	1.097	1.00
145_L	154_L	1.097	1.00
146_S	152_E	1.096	1.00
187_E	204_R	1.095	1.00
143_D	149_N	1.092	1.00
145_L	150_L	1.091	1.00
196_I	207_G	1.089	1.00
282_K	290_L	1.086	1.00
150_L	156_G	1.085	1.00
202_I	302_T	1.072	1.00
33_F	57_N	1.065	1.00
123_R	127_R	1.062	1.00
248_I	257_R	1.058	1.00
16_V	23_Y	1.055	1.00
10_V	15_L	1.054	1.00
33_F	61_Y	1.052	1.00
23_Y	93_K	1.050	1.00
146_S	154_L	1.048	1.00
45_K	67_D	1.047	1.00
145_L	152_E	1.042	1.00
183_E	187_E	1.040	1.00
304_A	307_Y	1.037	1.00
263_A	298_L	1.036	1.00
261_Y	292_T	1.025	1.00
74_L	78_K	1.018	1.00
174_R	177_V	1.017	1.00
115_T	255_V	1.016	1.00
127_R	130_N	1.013	1.00
37_K	61_Y	1.007	1.00
305_V	310_K	0.993	1.00
281_H	290_L	0.992	1.00
71_I	76_L	0.991	1.00
80_K	94_K	0.991	1.00
12_K	137_I	0.990	1.00
6_A	46_V	0.986	1.00
26_F	32_G	0.982	1.00
277_F	281_H	0.975	0.99
277_F	293_A	0.971	0.99
6_A	17_V	0.967	0.99
301_I	305_V	0.965	0.99
148_K	152_E	0.963	0.99
46_V	62_L	0.963	0.99
5_V	99_V	0.959	0.99
178_R	181_E	0.958	0.99
6_A	40_L	0.957	0.99
151_N	154_L	0.953	0.99
26_F	39_V	0.953	0.99
147_K	150_L	0.951	0.99
277_F	294_C	0.951	0.99
143_D	147_K	0.941	0.99
114_L	182_I	0.941	0.99
261_Y	265_L	0.939	0.99
17_V	39_V	0.933	0.99
93_K	97_E	0.932	0.99
148_K	151_N	0.929	0.99
176_E	180_R	0.924	0.99
86_K	91_D	0.923	0.99
264_A	291_I	0.919	0.99
105_E	108_T	0.916	0.99
145_L	148_K	0.913	0.99
196_I	306_L	0.912	0.99
145_L	156_G	0.901	0.99
128_V	132_L	0.896	0.99
152_E	156_G	0.888	0.99
38_Q	41_P	0.880	0.99
250_R	257_R	0.879	0.99
147_K	154_L	0.878	0.99
143_D	156_G	0.871	0.99
150_L	154_L	0.863	0.99
158_D	161_V	0.860	0.99
281_H	285_L	0.858	0.99
260_F	299_A	0.855	0.99
148_K	155_R	0.851	0.99
167_F	185_E	0.850	0.99
32_G	35_G	0.849	0.99
55_H	70_I	0.848	0.99
145_L	155_R	0.846	0.99
59_A	68_V	0.842	0.98
214_V	217_V	0.840	0.98
265_L	268_I	0.838	0.98
59_A	70_I	0.835	0.98
115_T	186_L	0.834	0.98
176_E	179_K	0.833	0.98
5_V	100_I	0.833	0.98
84_G	228_A	0.833	0.98
69_R	99_V	0.831	0.98
122_T	126_V	0.825	0.98
217_V	306_L	0.818	0.98
112_K	213_R	0.818	0.98
128_V	172_L	0.812	0.98
185_E	189_L	0.808	0.98
150_L	155_R	0.804	0.98
73_P	213_R	0.802	0.98
129_K	172_L	0.801	0.98
239_S	243_V	0.796	0.98
144_S	149_N	0.795	0.98
160_I	163_S	0.795	0.98
167_F	171_E	0.790	0.98
277_F	280_E	0.785	0.98
202_I	298_L	0.780	0.98
115_T	208_C	0.778	0.97
16_V	89_K	0.777	0.97
121_I	182_I	0.776	0.97
292_T	295_A	0.775	0.97
95_L	98_L	0.774	0.97
143_D	157_E	0.774	0.97
117_Q	167_F	0.774	0.97
143_D	151_N	0.773	0.97
144_S	157_E	0.768	0.97
11_S	15_L	0.767	0.97
10_V	48_I	0.765	0.97
50_S	73_P	0.765	0.97
159_N	185_E	0.764	0.97
281_H	286_K	0.762	0.97
147_K	153_V	0.762	0.97
274_I	298_L	0.761	0.97
143_D	152_E	0.757	0.97
238_S	244_V	0.757	0.97
177_V	181_E	0.755	0.97
15_L	28_N	0.753	0.97
288_K	291_I	0.751	0.97
144_S	155_R	0.751	0.97
229_Y	253_D	0.749	0.97
265_L	288_K	0.747	0.97
45_K	99_V	0.744	0.97
147_K	155_R	0.743	0.97
40_L	62_L	0.743	0.97
51_T	54_Y	0.742	0.97
261_Y	288_K	0.741	0.97
213_R	255_V	0.740	0.97
115_T	209_I	0.738	0.97
272_P	275_K	0.737	0.96
117_Q	164_E	0.735	0.96
187_E	191_P	0.734	0.96
31_Q	35_G	0.729	0.96
225_R	228_A	0.729	0.96
132_L	169_L	0.722	0.96
71_I	98_L	0.721	0.96
302_T	305_V	0.721	0.96
193_D	211_L	0.717	0.96
84_G	251_R	0.717	0.96
265_L	295_A	0.717	0.96
107_T	192_K	0.716	0.96
105_E	109_S	0.714	0.96
36_V	40_L	0.714	0.96
233_D	250_R	0.710	0.96
15_L	26_F	0.709	0.96
233_D	249_S	0.707	0.96
286_K	290_L	0.706	0.96
197_F	207_G	0.706	0.96
144_S	150_L	0.705	0.95
195_L	309_N	0.705	0.95
145_L	157_E	0.699	0.95
175_L	179_K	0.698	0.95
144_S	147_K	0.697	0.95
110_E	158_D	0.697	0.95
72_N	75_I	0.694	0.95
262_L	288_K	0.694	0.95
280_E	283_G	0.693	0.95
37_K	41_P	0.687	0.95
175_L	178_R	0.686	0.95
128_V	171_E	0.684	0.95
151_N	156_G	0.683	0.95
268_I	282_K	0.681	0.95
17_V	26_F	0.681	0.95
152_E	157_E	0.679	0.94
276_R	280_E	0.678	0.94
15_L	58_L	0.676	0.94
267_A	274_I	0.675	0.94
222_D	303_W	0.674	0.94
117_Q	182_I	0.672	0.94
98_L	102_M	0.672	0.94
190_V	208_C	0.668	0.94
168_L	171_E	0.666	0.94
7_G	92_A	0.666	0.94
273_I	312_F	0.665	0.94
235_L	249_S	0.663	0.94
210_I	256_L	0.662	0.94
43_G	67_D	0.661	0.94
143_D	154_L	0.660	0.94
88_D	239_S	0.659	0.94
166_R	170_D	0.658	0.94
162_L	166_R	0.656	0.93
128_V	175_L	0.654	0.93
131_R	168_L	0.651	0.93
6_A	44_C	0.651	0.93
119_D	123_R	0.650	0.93
233_D	236_V	0.649	0.93
199_I	202_I	0.648	0.93
30_K	34_E	0.647	0.93
160_I	185_E	0.647	0.93
177_V	180_R	0.645	0.93
85_K	90_N	0.644	0.93
122_T	183_E	0.641	0.93
252_G	257_R	0.641	0.93
43_G	66_Y	0.640	0.93
216_D	219_R	0.639	0.93
50_S	70_I	0.638	0.92
144_S	148_K	0.636	0.92
109_S	113_E	0.636	0.92
236_V	243_V	0.635	0.92
115_T	212_A	0.633	0.92
32_G	39_V	0.633	0.92
37_K	66_Y	0.629	0.92
289_K	293_A	0.628	0.92
281_H	293_A	0.628	0.92
53_I	137_I	0.627	0.92
111_A	186_L	0.626	0.92
79_F	98_L	0.624	0.92
128_V	168_L	0.621	0.91
131_R	134_R	0.615	0.91
120_F	124_S	0.615	0.91
76_L	98_L	0.612	0.91
32_G	36_V	0.610	0.91
10_V	54_Y	0.609	0.91
144_S	156_G	0.609	0.91
278_Y	282_K	0.609	0.91
270_V	275_K	0.609	0.91
130_N	134_R	0.607	0.90
214_V	230_C	0.606	0.90
147_K	157_E	0.605	0.90
18_Y	23_Y	0.604	0.90
265_L	291_I	0.604	0.90
107_T	110_E	0.602	0.90
147_K	152_E	0.602	0.90
74_L	251_R	0.600	0.90
262_L	266_T	0.598	0.90
34_E	38_Q	0.596	0.90
202_I	210_I	0.593	0.89
268_I	291_I	0.592	0.89
6_A	62_L	0.591	0.89
113_E	161_V	0.587	0.89
120_F	164_E	0.585	0.89
172_L	175_L	0.585	0.89
28_N	33_F	0.582	0.89
260_F	295_A	0.580	0.88
62_L	298_L	0.578	0.88
77_K	81_D	0.577	0.88
209_I	213_R	0.576	0.88
300_V	303_W	0.576	0.88
116_S	255_V	0.575	0.88
181_E	185_E	0.575	0.88
18_Y	96_A	0.575	0.88
144_S	154_L	0.571	0.88
233_D	257_R	0.568	0.87
116_S	253_D	0.567	0.87
258_R	261_Y	0.567	0.87
35_G	38_Q	0.566	0.87
114_L	185_E	0.566	0.87
11_S	240_G	0.566	0.87
33_F	39_V	0.566	0.87
7_G	62_L	0.565	0.87
265_L	269_K	0.564	0.87
173_E	176_E	0.561	0.87
163_S	174_R	0.561	0.87
48_I	95_L	0.558	0.86
51_T	55_H	0.556	0.86
145_L	151_N	0.555	0.86
190_V	193_D	0.554	0.86
248_I	252_G	0.554	0.86
268_I	294_C	0.553	0.86
31_Q	39_V	0.552	0.86
79_F	101_S	0.551	0.86
25_E	28_N	0.550	0.86
90_N	94_K	0.550	0.86
184_E	188_D	0.548	0.85
48_I	70_I	0.548	0.85
163_S	166_R	0.548	0.85
217_V	303_W	0.548	0.85
223_K	303_W	0.546	0.85
58_L	62_L	0.546	0.85
76_L	94_K	0.546	0.85
271_N	275_K	0.545	0.85
259_A	263_A	0.544	0.85
237_E	246_R	0.543	0.85
167_F	170_D	0.543	0.85
276_R	279_E	0.542	0.85
121_I	175_L	0.542	0.85
17_V	40_L	0.541	0.85
111_A	189_L	0.538	0.84
227_V	300_V	0.537	0.84
173_E	177_V	0.535	0.84
119_D	209_I	0.535	0.84
224_K	296_R	0.535	0.84
143_D	150_L	0.532	0.84
215_G	219_R	0.532	0.84
232_L	296_R	0.531	0.84
16_V	239_S	0.530	0.84
189_L	192_K	0.529	0.83
223_K	300_V	0.529	0.83
117_Q	128_V	0.528	0.83
202_I	263_A	0.528	0.83
228_A	233_D	0.524	0.83
125_I	175_L	0.523	0.83
267_A	298_L	0.523	0.83
266_T	270_V	0.521	0.82
97_E	100_I	0.520	0.82
111_A	193_D	0.520	0.82
120_F	127_R	0.519	0.82
87_S	238_S	0.518	0.82
114_L	118_W	0.516	0.82
143_D	155_R	0.512	0.81
41_P	66_Y	0.509	0.81
235_L	246_R	0.509	0.81
279_E	282_K	0.509	0.81
183_E	205_T	0.508	0.81
144_S	153_V	0.507	0.81
74_L	84_G	0.504	0.80
190_V	207_G	0.503	0.80
218_K	307_Y	0.501	0.80
209_I	255_V	0.500	0.80
271_N	301_I	0.500	0.80
186_L	190_V	0.500	0.80
186_L	208_C	0.500	0.80

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4ep4A	2	0.3418	89	0.939	Contact Map
1hjrA	2	0.3323	88.6	0.939	Contact Map
3c1yA	5	0.7627	86.9	0.941	Contact Map
3fhfA	1	0.6203	85	0.942	Contact Map
1pu6A	1	0.6076	84.8	0.942	Contact Map
1keaA	2	0.6266	83.4	0.943	Contact Map
1nu0A	1	0.3133	83	0.944	Contact Map
2a1jB	2	0.2437	79.4	0.946	Contact Map
4b21A	2	0.5918	78.2	0.946	Contact Map
2duyA	1	0.2057	78.1	0.946	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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