Q97Y44 - SULSO - GREMLIN Contacts

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Q97Y44 - Transposase ISC1316

UniProt:	Q97Y44	Sequences: MPTLGFRFRAYTDEQTLRALKAQLKSACKIYNTLRWADIYFYQRDGKGLTRTELRQLALDLRKQDDEYKQLYSQVVQQVADRYYEAKKRFFEGLAHFPKEKKPHKHYSLVYPQYGWKILQVREIRKGSKKKLITLKLSNLGTFKVIVHRDFPLDKVKRVVVKLTRSERIYITFVVDHEFPKLPNTGKVVAIDVGVEKLIVTSDGEYFPNLRPYEKALWKVKHLHRELSRKKFLSHNWFKAKVKLARAYEYLKNLRTDLYMKLGKWFAEHYDVVVMEGIHVKQLIGKSLRSLRRRLSDVAFSELRDLIKYQLEKYGKKLILVNPAYTSKTCAKCGYVKEDLSLSDRVFVCPNCGWIADRDYNASLNILRGSGSERPLVWSSALYQYSGMAEL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	391 (352)
Sequences:	4628 (2974)
Seq/√Len:	158.5

ECOLI - INSQ
HALSA - Q9HSW9 Q9HHJ9 Q9HM87 Q9HHG8 Q9HSW7 Q9HSD4 Q9HSZ6 Q9HHU6 Q9HSY4 Q9HHX8
SULSO - Q97Y44 Q97XP1 Q97V47 Q97XQ8 Q97YI2 Q97V25 Q97YW4 Q97XA4 Q97V53 Q97Y48 Q97YI5 Q97YU1 Q97U51 Q97U68 Q97XQ0 Q97Z61 Q97Y67 Q97XB6 Q97UQ8 Q97WY6 Q97WZ3 Q97YW9 Q97X39 Q7LXD9 Q7LXH2 Q7LXH6 Q97YF7 Q97U09 Q7LX59 Q7LX75 Y2105 Q97YK6 Q7LXH9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
257_D	261_K	5.350	1.00
331_A	361_N	4.252	1.00
279_H	282_Q	4.219	1.00
311_L	318_L	3.663	1.00
275_M	307_I	2.972	1.00
274_V	370_S	2.972	1.00
198_L	303_L	2.910	1.00
304_R	320_L	2.907	1.00
264_K	268_E	2.737	1.00
302_E	306_L	2.712	1.00
341_S	344_D	2.549	1.00
159_V	171_I	2.509	1.00
284_I	296_S	2.496	1.00
325_Y	328_K	2.409	1.00
302_E	305_D	2.406	1.00
308_K	320_L	2.402	1.00
329_T	336_V	2.315	1.00
267_A	311_L	2.307	1.00
217_L	293_R	2.300	1.00
321_V	366_I	2.266	1.00
369_G	372_S	2.207	1.00
303_L	307_I	2.165	1.00
273_V	311_L	2.147	1.00
36_W	40_Y	2.114	1.00
348_V	355_I	2.112	1.00
223_L	240_A	2.089	1.00
330_C	333_C	2.081	1.00
260_M	309_Y	2.068	1.00
326_T	366_I	2.052	1.00
275_M	318_L	2.051	1.00
13_D	16_T	2.047	1.00
260_M	306_L	2.028	1.00
289_R	292_R	2.009	1.00
157_K	176_D	2.003	1.00
333_C	352_C	2.001	1.00
216_A	254_L	1.970	1.00
328_K	340_L	1.937	1.00
256_T	302_E	1.933	1.00
263_G	306_L	1.931	1.00
39_I	97_F	1.918	1.00
240_A	244_L	1.874	1.00
345_R	358_R	1.870	1.00
333_C	349_C	1.870	1.00
51_R	55_R	1.854	1.00
259_Y	306_L	1.852	1.00
34_L	80_A	1.844	1.00
349_C	352_C	1.807	1.00
308_K	312_E	1.801	1.00
21_K	169_I	1.800	1.00
22_A	70_Q	1.798	1.00
52_T	55_R	1.798	1.00
330_C	352_C	1.795	1.00
260_M	310_Q	1.773	1.00
198_L	258_L	1.769	1.00
260_M	263_G	1.767	1.00
332_K	354_W	1.754	1.00
235_H	238_F	1.744	1.00
271_D	316_K	1.721	1.00
51_R	81_D	1.720	1.00
330_C	349_C	1.705	1.00
347_F	356_A	1.677	1.00
35_R	83_Y	1.655	1.00
9_R	168_R	1.627	1.00
259_Y	302_E	1.594	1.00
135_L	171_I	1.591	1.00
29_K	67_E	1.579	1.00
275_M	320_L	1.570	1.00
191_I	199_I	1.546	1.00
275_M	304_R	1.546	1.00
238_F	241_K	1.530	1.00
226_E	230_K	1.507	1.00
263_G	309_Y	1.504	1.00
20_L	169_I	1.490	1.00
230_K	240_A	1.490	1.00
337_K	340_L	1.488	1.00
227_L	241_K	1.483	1.00
82_R	110_V	1.482	1.00
346_V	355_I	1.472	1.00
347_F	354_W	1.465	1.00
18_R	22_A	1.457	1.00
17_L	21_K	1.451	1.00
74_Q	113_Q	1.441	1.00
74_Q	112_P	1.433	1.00
84_Y	88_K	1.433	1.00
5_G	172_T	1.414	1.00
188_V	367_L	1.402	1.00
200_V	360_Y	1.399	1.00
206_Y	357_D	1.394	1.00
189_V	201_T	1.390	1.00
277_G	320_L	1.384	1.00
335_Y	350_P	1.382	1.00
364_L	368_R	1.376	1.00
52_T	56_Q	1.374	1.00
340_L	344_D	1.373	1.00
233_L	237_W	1.365	1.00
89_R	95_A	1.359	1.00
223_L	226_E	1.355	1.00
263_G	303_L	1.353	1.00
201_T	205_E	1.347	1.00
308_K	318_L	1.341	1.00
34_L	83_Y	1.327	1.00
342_L	345_R	1.318	1.00
197_K	200_V	1.299	1.00
39_I	43_Q	1.297	1.00
263_G	310_Q	1.294	1.00
276_E	323_P	1.287	1.00
166_S	249_E	1.280	1.00
216_A	251_L	1.267	1.00
249_E	253_N	1.266	1.00
295_L	300_F	1.265	1.00
24_L	169_I	1.264	1.00
168_R	249_E	1.255	1.00
37_A	57_L	1.235	1.00
55_R	81_D	1.228	1.00
267_A	314_Y	1.225	1.00
136_K	142_T	1.222	1.00
87_K	97_F	1.219	1.00
337_K	347_F	1.214	1.00
188_V	272_V	1.204	1.00
220_V	244_L	1.200	1.00
189_V	270_Y	1.200	1.00
50_T	53_E	1.199	1.00
14_E	17_L	1.193	1.00
331_A	364_L	1.184	1.00
85_E	89_R	1.182	1.00
164_T	168_R	1.171	1.00
356_A	364_L	1.170	1.00
227_L	240_A	1.165	1.00
88_K	92_E	1.162	1.00
360_Y	364_L	1.160	1.00
220_V	248_Y	1.155	1.00
265_W	269_H	1.155	1.00
224_H	228_S	1.146	1.00
134_T	142_T	1.142	1.00
219_K	223_L	1.140	1.00
78_Q	81_D	1.134	1.00
55_R	80_A	1.133	1.00
193_V	300_F	1.131	1.00
38_D	54_L	1.129	1.00
51_R	80_A	1.122	1.00
342_L	358_R	1.117	1.00
195_V	298_V	1.116	1.00
27_A	79_V	1.112	1.00
223_L	247_A	1.109	1.00
259_Y	303_L	1.109	1.00
284_I	292_R	1.103	1.00
259_Y	263_G	1.103	1.00
78_Q	112_P	1.098	1.00
200_V	206_Y	1.097	0.99
331_A	356_A	1.093	0.99
12_T	16_T	1.092	0.99
191_I	201_T	1.090	0.99
328_K	336_V	1.088	0.99
279_H	323_P	1.087	0.99
310_Q	313_K	1.086	0.99
164_T	167_E	1.079	0.99
190_A	367_L	1.074	0.99
197_K	208_P	1.073	0.99
337_K	341_S	1.073	0.99
341_S	345_R	1.068	0.99
321_V	369_G	1.066	0.99
162_K	172_T	1.064	0.99
267_A	273_V	1.054	0.99
267_A	316_K	1.048	0.99
62_R	76_V	1.041	0.99
306_L	309_Y	1.039	0.99
58_A	80_A	1.035	0.99
256_T	306_L	1.035	0.99
264_K	314_Y	1.032	0.99
227_L	244_L	1.030	0.99
326_T	369_G	1.026	0.99
337_K	350_P	1.021	0.99
328_K	339_D	1.011	0.99
31_Y	79_V	1.010	0.99
12_T	20_L	1.008	0.99
185_T	271_D	1.008	0.99
328_K	338_E	1.006	0.99
329_T	369_G	1.003	0.99
6_F	175_V	1.001	0.99
268_E	314_Y	1.001	0.99
40_Y	44_R	0.996	0.99
31_Y	86_A	0.994	0.99
341_S	358_R	0.990	0.99
356_A	360_Y	0.988	0.99
202_S	363_S	0.987	0.99
137_L	161_V	0.985	0.99
117_K	136_K	0.979	0.99
193_V	304_R	0.972	0.99
72_Y	75_V	0.971	0.99
197_K	206_Y	0.966	0.99
89_R	94_L	0.964	0.99
56_Q	59_L	0.962	0.99
263_G	307_I	0.960	0.99
252_K	256_T	0.952	0.99
224_H	244_L	0.951	0.99
321_V	370_S	0.945	0.98
274_V	366_I	0.941	0.98
35_R	87_K	0.941	0.98
29_K	33_T	0.937	0.98
74_Q	78_Q	0.936	0.98
111_Y	114_Y	0.931	0.98
188_V	371_G	0.924	0.98
344_D	347_F	0.923	0.98
331_A	354_W	0.915	0.98
82_R	160_V	0.915	0.98
277_G	323_P	0.914	0.98
90_F	97_F	0.912	0.98
116_W	120_Q	0.908	0.98
220_V	228_S	0.905	0.98
331_A	362_A	0.905	0.98
280_V	301_S	0.904	0.98
110_V	158_R	0.900	0.98
26_S	67_E	0.899	0.98
247_A	251_L	0.898	0.98
259_Y	299_A	0.898	0.98
164_T	249_E	0.895	0.98
78_Q	110_V	0.890	0.98
243_K	246_R	0.889	0.98
344_D	358_R	0.889	0.98
311_L	316_K	0.887	0.98
220_V	251_L	0.884	0.98
237_W	241_K	0.883	0.98
340_L	347_F	0.882	0.98
58_A	77_Q	0.878	0.98
117_K	120_Q	0.875	0.98
33_T	37_A	0.873	0.97
223_L	244_L	0.871	0.97
346_V	356_A	0.871	0.97
230_K	236_N	0.870	0.97
39_I	87_K	0.867	0.97
120_Q	133_I	0.867	0.97
42_Y	87_K	0.866	0.97
305_D	308_K	0.863	0.97
41_F	45_D	0.862	0.97
31_Y	83_Y	0.862	0.97
59_L	63_K	0.862	0.97
188_V	274_V	0.859	0.97
8_F	171_I	0.859	0.97
272_V	317_K	0.853	0.97
77_Q	81_D	0.848	0.97
347_F	358_R	0.845	0.97
323_P	326_T	0.841	0.97
68_Y	76_V	0.838	0.97
272_V	319_I	0.836	0.97
224_H	248_Y	0.833	0.97
226_E	229_R	0.833	0.97
331_A	368_R	0.832	0.97
195_V	284_I	0.831	0.97
74_Q	114_Y	0.830	0.97
189_V	202_S	0.830	0.97
110_V	160_V	0.829	0.97
250_Y	254_L	0.827	0.97
228_S	244_L	0.826	0.96
89_R	92_E	0.826	0.96
360_Y	363_S	0.824	0.96
325_Y	369_G	0.823	0.96
291_L	295_L	0.821	0.96
361_N	365_N	0.820	0.96
160_V	172_T	0.815	0.96
212_P	254_L	0.814	0.96
60_D	64_Q	0.813	0.96
200_V	207_F	0.813	0.96
193_V	199_I	0.812	0.96
364_L	367_L	0.811	0.96
30_I	79_V	0.807	0.96
301_S	305_D	0.806	0.96
345_R	357_D	0.805	0.96
17_L	169_I	0.804	0.96
338_E	341_S	0.804	0.96
258_L	262_L	0.804	0.96
25_K	28_C	0.803	0.96
213_Y	216_A	0.802	0.96
41_F	49_L	0.799	0.96
264_K	310_Q	0.798	0.96
158_R	174_V	0.797	0.96
221_K	224_H	0.797	0.96
266_F	273_V	0.793	0.96
274_V	319_I	0.790	0.95
34_L	54_L	0.790	0.95
335_Y	351_N	0.789	0.95
289_R	296_S	0.788	0.95
186_G	271_D	0.787	0.95
187_K	271_D	0.785	0.95
90_F	98_P	0.784	0.95
277_G	304_R	0.784	0.95
328_K	337_K	0.784	0.95
362_A	365_N	0.783	0.95
332_K	364_L	0.783	0.95
161_V	171_I	0.782	0.95
25_K	29_K	0.781	0.95
104_H	107_Y	0.778	0.95
195_V	294_R	0.777	0.95
262_L	265_W	0.776	0.95
119_L	136_K	0.776	0.95
209_N	212_P	0.773	0.95
74_Q	77_Q	0.773	0.95
227_L	237_W	0.773	0.95
59_L	62_R	0.772	0.95
213_Y	217_L	0.769	0.95
207_F	262_L	0.769	0.95
53_E	56_Q	0.766	0.95
78_Q	82_R	0.765	0.95
221_K	225_R	0.764	0.95
111_Y	137_L	0.762	0.95
23_Q	27_A	0.758	0.94
71_L	74_Q	0.755	0.94
34_L	58_A	0.755	0.94
205_E	265_W	0.752	0.94
199_I	262_L	0.750	0.94
135_L	159_V	0.747	0.94
196_E	200_V	0.745	0.94
340_L	358_R	0.745	0.94
338_E	347_F	0.741	0.94
115_G	138_S	0.739	0.94
14_E	18_R	0.738	0.94
222_H	226_E	0.738	0.94
189_V	273_V	0.737	0.93
87_K	91_F	0.733	0.93
38_D	87_K	0.733	0.93
109_L	113_Q	0.732	0.93
36_W	100_E	0.729	0.93
329_T	365_N	0.729	0.93
26_S	68_Y	0.726	0.93
155_K	176_D	0.725	0.93
51_R	54_L	0.725	0.93
241_K	245_A	0.723	0.93
223_L	243_K	0.723	0.93
55_R	59_L	0.722	0.93
134_T	144_K	0.721	0.93
329_T	338_E	0.721	0.93
38_D	84_Y	0.718	0.93
319_I	370_S	0.717	0.93
12_T	143_F	0.714	0.92
278_I	323_P	0.712	0.92
132_L	137_L	0.711	0.92
274_V	367_L	0.709	0.92
220_V	224_H	0.709	0.92
226_E	243_K	0.708	0.92
26_S	71_L	0.708	0.92
203_D	270_Y	0.707	0.92
182_L	185_T	0.706	0.92
216_A	220_V	0.703	0.92
184_N	187_K	0.703	0.92
37_A	61_L	0.702	0.92
236_N	239_K	0.702	0.92
206_Y	360_Y	0.701	0.92
62_R	65_D	0.696	0.91
93_G	96_H	0.695	0.91
282_Q	323_P	0.695	0.91
37_A	54_L	0.692	0.91
74_Q	115_G	0.692	0.91
233_L	238_F	0.690	0.91
273_V	307_I	0.684	0.91
19_A	23_Q	0.683	0.91
10_A	171_I	0.683	0.91
26_S	29_K	0.681	0.90
199_I	303_L	0.680	0.90
7_R	162_K	0.679	0.90
20_L	24_L	0.679	0.90
216_A	247_A	0.678	0.90
227_L	230_K	0.678	0.90
325_Y	336_V	0.676	0.90
325_Y	329_T	0.675	0.90
251_L	297_D	0.673	0.90
234_S	237_W	0.665	0.89
192_D	359_D	0.665	0.89
199_I	207_F	0.664	0.89
309_Y	313_K	0.664	0.89
209_N	298_V	0.662	0.89
339_D	344_D	0.660	0.89
11_Y	146_I	0.660	0.89
255_R	297_D	0.659	0.89
210_L	258_L	0.658	0.89
80_A	84_Y	0.657	0.89
266_F	270_Y	0.656	0.89
86_A	98_P	0.655	0.89
202_S	360_Y	0.649	0.88
337_K	358_R	0.647	0.88
366_I	369_G	0.647	0.88
268_E	272_V	0.645	0.88
212_P	216_A	0.645	0.88
147_V	150_D	0.643	0.88
33_T	61_L	0.642	0.88
42_Y	46_G	0.640	0.88
194_G	200_V	0.639	0.87
79_V	83_Y	0.639	0.87
9_R	170_Y	0.639	0.87
311_L	314_Y	0.638	0.87
192_D	327_S	0.638	0.87
5_G	174_V	0.638	0.87
198_L	263_G	0.638	0.87
87_K	90_F	0.635	0.87
115_G	118_I	0.635	0.87
19_A	22_A	0.635	0.87
8_F	149_R	0.633	0.87
83_Y	87_K	0.631	0.87
73_S	115_G	0.630	0.87
145_V	148_H	0.629	0.87
12_T	17_L	0.628	0.87
342_L	357_D	0.626	0.86
306_L	310_Q	0.626	0.86
225_R	229_R	0.625	0.86
190_A	274_V	0.623	0.86
280_V	300_F	0.623	0.86
253_N	256_T	0.623	0.86
22_A	26_S	0.622	0.86
340_L	345_R	0.621	0.86
114_Y	117_K	0.621	0.86
216_A	250_Y	0.619	0.86
222_H	225_R	0.617	0.86
8_F	147_V	0.616	0.86
7_R	256_T	0.616	0.86
356_A	361_N	0.615	0.85
59_L	73_S	0.612	0.85
368_R	371_G	0.612	0.85
225_R	228_S	0.612	0.85
187_K	270_Y	0.611	0.85
332_K	356_A	0.609	0.85
198_L	298_V	0.609	0.85
15_Q	18_R	0.607	0.85
283_L	295_L	0.607	0.85
226_E	240_A	0.605	0.85
149_R	152_P	0.602	0.84
221_K	228_S	0.600	0.84
81_D	112_P	0.597	0.84
51_R	59_L	0.594	0.83
119_L	142_T	0.590	0.83
207_F	258_L	0.590	0.83
256_T	260_M	0.588	0.83
37_A	41_F	0.587	0.83
270_Y	273_V	0.585	0.83
198_L	259_Y	0.583	0.82
21_K	164_T	0.583	0.82
111_Y	116_W	0.583	0.82
214_E	217_L	0.580	0.82
284_I	289_R	0.579	0.82
20_L	109_L	0.579	0.82
45_D	48_G	0.576	0.82
322_N	325_Y	0.574	0.81
23_Q	71_L	0.573	0.81
37_A	40_Y	0.572	0.81
179_F	312_E	0.572	0.81
348_V	354_W	0.569	0.81
137_L	159_V	0.567	0.81
282_Q	291_L	0.567	0.81
214_E	293_R	0.567	0.81
23_Q	109_L	0.566	0.80
282_Q	295_L	0.566	0.80
73_S	112_P	0.566	0.80
76_V	79_V	0.565	0.80
116_W	156_V	0.565	0.80
329_T	334_G	0.563	0.80
42_Y	45_D	0.559	0.80
264_K	267_A	0.558	0.79
194_G	197_K	0.558	0.79
72_Y	111_Y	0.558	0.79
38_D	41_F	0.558	0.79
337_K	344_D	0.556	0.79
10_A	145_V	0.554	0.79
329_T	347_F	0.553	0.79
23_Q	111_Y	0.551	0.79
214_E	294_R	0.551	0.79
274_V	369_G	0.551	0.79
190_A	363_S	0.551	0.79
71_L	76_V	0.550	0.79
31_Y	35_R	0.549	0.78
190_A	202_S	0.549	0.78
230_K	234_S	0.549	0.78
54_L	57_L	0.547	0.78
136_K	140_L	0.546	0.78
248_Y	255_R	0.545	0.78
33_T	67_E	0.545	0.78
112_P	116_W	0.543	0.78
292_R	296_S	0.542	0.78
5_G	162_K	0.542	0.78
72_Y	113_Q	0.542	0.78
196_E	345_R	0.542	0.78
36_W	39_I	0.542	0.78
324_A	328_K	0.541	0.77
207_F	265_W	0.541	0.77
168_R	253_N	0.541	0.77
299_A	302_E	0.540	0.77
223_L	227_L	0.540	0.77
145_V	150_D	0.537	0.77
133_I	147_V	0.536	0.77
137_L	143_F	0.536	0.77
30_I	76_V	0.535	0.77
182_L	316_K	0.535	0.77
59_L	80_A	0.534	0.76
231_K	237_W	0.533	0.76
350_P	358_R	0.533	0.76
7_R	172_T	0.533	0.76
219_K	222_H	0.532	0.76
307_I	318_L	0.531	0.76
15_Q	19_A	0.531	0.76
54_L	59_L	0.530	0.76
291_L	294_R	0.529	0.76
47_K	53_E	0.529	0.76
342_L	346_V	0.529	0.76
75_V	109_L	0.528	0.76
248_Y	252_K	0.528	0.76
8_F	150_D	0.525	0.75
23_Q	72_Y	0.522	0.75
304_R	308_K	0.521	0.75
58_A	62_R	0.521	0.75
262_L	303_L	0.521	0.75
221_K	289_R	0.520	0.75
10_A	143_F	0.519	0.74
203_D	265_W	0.517	0.74
38_D	45_D	0.516	0.74
135_L	138_S	0.515	0.74
231_K	234_S	0.513	0.74
48_G	54_L	0.512	0.73
102_K	105_K	0.511	0.73
22_A	25_K	0.510	0.73
141_G	144_K	0.508	0.73
192_D	276_E	0.508	0.73
237_W	240_A	0.507	0.73
162_K	165_R	0.506	0.73
47_K	50_T	0.506	0.73
267_A	307_I	0.506	0.73
259_Y	262_L	0.505	0.72
264_K	306_L	0.504	0.72
232_F	237_W	0.504	0.72
73_S	113_Q	0.502	0.72
238_F	242_V	0.501	0.72
260_M	264_K	0.500	0.72
274_V	371_G	0.500	0.72

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1vhxA	2	0.3504	91.5	0.937	Contact Map
1nu0A	1	0.3325	91	0.938	Contact Map
4aybP	1	0.11	89.2	0.94	Contact Map
1qypA	1	0.1176	88.2	0.941	Contact Map
1iv0A	1	0.2481	87.9	0.942	Contact Map
1ffkW	1	0.1841	85.2	0.944	Contact Map
1vq8Z	1	0.1867	84.9	0.944	Contact Map
1vd4A	1	0.1432	84.7	0.944	Contact Map
3j20Y	1	0.1279	83.4	0.945	Contact Map
2k4xA	1	0.1407	81.2	0.947	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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