Q97Y39 - SULSO - GREMLIN Contacts

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Q97Y39 - Uncharacterized protein

UniProt:	Q97Y39	Sequences: MSIIMERQRGNQLLRIISEYMTNLKEKGQKLAKDNTMENLVNFTPRYNLIKSYLDDVERALDRSGLCYVKITFITLSKLLTGWSPIYFITEVPLAWDMILDTPYIAGSEIKGIVKNYFKEVTSNDKVESCLYGDEGKMGKVIFFNAYPIDGKNVLTYDIITPHYNGAKDEYNVKPIPIKFLAINKGITFKTYLAFDNKELNECGKDSLYLLLKTMIFSMRIGWGRKVTRGYGSLDIKEMDVKCHGE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	246 (206)
Sequences:	294 (264)
Seq/√Len:	18.4

SULSO - Q97Y39 CMR6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
75_T	187_I	3.496	1.00
144_F	194_A	3.444	1.00
158_D	231_Y	3.407	1.00
97_D	100_L	2.979	0.99
131_L	141_V	2.958	0.99
162_P	178_I	2.816	0.98
82_G	145_N	2.673	0.98
72_T	188_T	2.460	0.96
84_S	169_D	2.418	0.96
168_K	171_Y	2.370	0.95
193_L	208_L	2.257	0.94
109_E	183_I	2.181	0.93
105_I	223_W	2.102	0.91
166_G	173_V	2.091	0.91
74_I	188_T	2.084	0.91
84_S	87_Y	2.080	0.91
96_W	100_L	2.053	0.90
114_V	214_T	2.051	0.90
164_Y	173_V	2.047	0.90
74_I	235_D	2.031	0.90
110_I	114_V	2.029	0.90
141_V	193_L	1.920	0.87
170_E	173_V	1.903	0.86
87_Y	100_L	1.876	0.85
35_N	38_E	1.857	0.85
81_T	106_A	1.832	0.84
59_R	62_D	1.816	0.83
100_L	167_A	1.814	0.83
144_F	148_P	1.805	0.83
84_S	101_D	1.767	0.82
115_K	119_K	1.760	0.81
159_I	191_T	1.741	0.81
167_A	171_Y	1.733	0.80
82_G	181_L	1.721	0.80
114_V	143_F	1.699	0.79
114_V	218_S	1.694	0.79
218_S	228_T	1.677	0.78
114_V	211_L	1.651	0.77
101_D	167_A	1.650	0.77
114_V	118_F	1.646	0.77
81_T	105_I	1.603	0.75
224_G	227_V	1.597	0.74
182_A	228_T	1.589	0.74
109_E	227_V	1.581	0.74
97_D	104_Y	1.560	0.73
115_K	128_E	1.549	0.72
111_K	226_K	1.538	0.72
84_S	167_A	1.537	0.72
158_D	180_F	1.506	0.70
110_I	191_T	1.501	0.70
89_I	92_V	1.497	0.69
97_D	102_T	1.490	0.69
157_Y	183_I	1.473	0.68
139_G	143_F	1.456	0.67
104_Y	115_K	1.451	0.67
113_I	223_W	1.407	0.64
97_D	171_Y	1.392	0.64
77_S	214_T	1.389	0.63
191_T	225_R	1.388	0.63
171_Y	226_K	1.385	0.63
164_Y	189_F	1.375	0.63
165_N	173_V	1.355	0.61
53_Y	62_D	1.351	0.61
95_A	161_T	1.346	0.61
163_H	226_K	1.342	0.61
100_L	171_Y	1.340	0.61
119_K	125_D	1.335	0.60
175_P	189_F	1.333	0.60
70_K	134_D	1.310	0.59
96_W	101_D	1.272	0.56
106_A	145_N	1.270	0.56
101_D	171_Y	1.269	0.56
111_K	163_H	1.257	0.56
80_L	83_W	1.237	0.54
83_W	93_P	1.226	0.54
81_T	223_W	1.224	0.54
156_T	182_A	1.213	0.53
84_S	160_I	1.212	0.53
89_I	96_W	1.212	0.53
38_E	42_N	1.212	0.53
156_T	184_N	1.212	0.53
197_N	216_I	1.211	0.53
73_F	191_T	1.210	0.53
79_L	183_I	1.189	0.51
81_T	96_W	1.178	0.51
101_D	232_G	1.178	0.51
106_A	158_D	1.172	0.50
155_L	233_S	1.169	0.50
224_G	231_Y	1.152	0.49
225_R	229_R	1.150	0.49
80_L	158_D	1.142	0.48
144_F	232_G	1.131	0.48
51_K	216_I	1.128	0.48
160_I	178_I	1.124	0.47
163_H	227_V	1.097	0.46
110_I	117_Y	1.085	0.45
89_I	100_L	1.078	0.44
161_T	179_K	1.074	0.44
104_Y	145_N	1.055	0.43
26_E	33_K	1.050	0.43
223_W	234_L	1.040	0.42
120_E	228_T	1.028	0.41
209_Y	213_K	1.019	0.41
91_E	164_Y	1.013	0.41
80_L	160_I	1.001	0.40
145_N	222_G	0.997	0.40
56_D	59_R	0.994	0.39
83_W	170_E	0.991	0.39
79_L	110_I	0.972	0.38
92_V	95_A	0.952	0.37
155_L	212_L	0.951	0.37
183_I	227_V	0.951	0.37
84_S	111_K	0.948	0.37
84_S	181_L	0.947	0.37
160_I	194_A	0.933	0.36
182_A	211_L	0.931	0.36
132_Y	139_G	0.926	0.35
147_Y	233_S	0.926	0.35
50_I	56_D	0.920	0.35
48_N	209_Y	0.919	0.35
148_P	189_F	0.916	0.35
73_F	234_L	0.911	0.35
92_V	218_S	0.911	0.35
50_I	54_L	0.898	0.34
105_I	224_G	0.893	0.34
98_M	159_I	0.886	0.33
106_A	231_Y	0.882	0.33
118_F	179_K	0.880	0.33
83_W	225_R	0.879	0.33
130_C	140_K	0.869	0.32
51_K	74_I	0.867	0.32
196_D	219_M	0.866	0.32
78_K	228_T	0.866	0.32
84_S	168_K	0.859	0.32
77_S	120_E	0.858	0.32
83_W	92_V	0.848	0.31
84_S	145_N	0.842	0.31
157_Y	170_E	0.841	0.31
48_N	235_D	0.841	0.31
52_S	213_K	0.825	0.30
160_I	169_D	0.807	0.29
55_D	58_E	0.806	0.29
50_I	150_D	0.805	0.29
99_I	161_T	0.803	0.29
78_K	156_T	0.799	0.29
42_N	105_I	0.798	0.29
61_L	102_T	0.798	0.29
32_A	39_N	0.798	0.29
82_G	110_I	0.797	0.28
107_G	161_T	0.795	0.28
75_T	189_F	0.795	0.28
79_L	223_W	0.792	0.28
82_G	231_Y	0.790	0.28
80_L	180_F	0.789	0.28
144_F	160_I	0.787	0.28
89_I	218_S	0.785	0.28
87_Y	169_D	0.785	0.28
40_L	193_L	0.782	0.28
100_L	173_V	0.782	0.28
144_F	192_Y	0.781	0.28
80_L	89_I	0.775	0.27
82_G	91_E	0.774	0.27
87_Y	117_Y	0.774	0.27
110_I	146_A	0.768	0.27
119_K	123_S	0.764	0.27
89_I	94_L	0.763	0.27
100_L	145_N	0.761	0.27
156_T	233_S	0.761	0.27
164_Y	170_E	0.760	0.27
26_E	29_Q	0.756	0.26
91_E	106_A	0.749	0.26
120_E	211_L	0.743	0.26
82_G	101_D	0.743	0.26
162_P	176_I	0.741	0.26
101_D	173_V	0.737	0.26
36_T	94_L	0.734	0.25
37_M	40_L	0.732	0.25
34_D	42_N	0.729	0.25
72_T	155_L	0.725	0.25
75_T	183_I	0.725	0.25
105_I	231_Y	0.723	0.25
106_A	148_P	0.717	0.25
78_K	105_I	0.716	0.25
78_K	191_T	0.715	0.25
37_M	206_D	0.714	0.24
82_G	92_V	0.710	0.24
101_D	170_E	0.705	0.24
112_G	222_G	0.705	0.24
92_V	96_W	0.704	0.24
84_S	180_F	0.703	0.24
153_N	167_A	0.701	0.24
37_M	42_N	0.699	0.24
78_K	117_Y	0.691	0.23
50_I	57_V	0.690	0.23
97_D	117_Y	0.688	0.23
109_E	126_K	0.682	0.23
84_S	89_I	0.681	0.23
81_T	89_I	0.678	0.23
103_P	112_G	0.677	0.23
93_P	96_W	0.674	0.23
70_K	190_K	0.674	0.23
193_L	211_L	0.672	0.23
93_P	163_H	0.670	0.23
78_K	185_K	0.668	0.22
92_V	220_R	0.662	0.22
79_L	232_G	0.660	0.22
68_Y	131_L	0.659	0.22
180_F	226_K	0.659	0.22
84_S	91_E	0.658	0.22
33_K	108_S	0.658	0.22
100_L	195_F	0.655	0.22
78_K	182_A	0.653	0.22
161_T	208_L	0.651	0.22
36_T	223_W	0.647	0.22
114_V	141_V	0.643	0.21
93_P	161_T	0.642	0.21
86_I	166_G	0.642	0.21
50_I	223_W	0.640	0.21
164_Y	182_A	0.639	0.21
36_T	41_V	0.637	0.21
101_D	168_K	0.636	0.21
112_G	230_G	0.634	0.21
211_L	214_T	0.634	0.21
113_I	225_R	0.631	0.21
109_E	215_M	0.631	0.21
47_Y	59_R	0.630	0.21
122_T	155_L	0.626	0.21
96_W	148_P	0.625	0.21
31_L	35_N	0.625	0.21
155_L	185_K	0.620	0.20
82_G	175_P	0.620	0.20
86_I	225_R	0.619	0.20
77_S	233_S	0.618	0.20
53_Y	122_T	0.617	0.20
104_Y	147_Y	0.610	0.20
103_P	232_G	0.608	0.20
180_F	218_S	0.608	0.20
84_S	171_Y	0.607	0.20
86_I	229_R	0.599	0.20
132_Y	226_K	0.599	0.20
219_M	223_W	0.599	0.20
169_D	178_I	0.599	0.20
157_Y	229_R	0.597	0.20
148_P	172_N	0.595	0.19
175_P	231_Y	0.595	0.19
98_M	101_D	0.591	0.19
169_D	181_L	0.587	0.19
74_I	233_S	0.587	0.19
193_L	210_L	0.586	0.19
167_A	226_K	0.586	0.19
157_Y	161_T	0.586	0.19
165_N	168_K	0.586	0.19
111_K	225_R	0.585	0.19
31_L	39_N	0.581	0.19
113_I	218_S	0.580	0.19
52_S	132_Y	0.580	0.19
84_S	96_W	0.580	0.19
85_P	93_P	0.577	0.19
85_P	95_A	0.572	0.19
175_P	181_L	0.569	0.18
82_G	104_Y	0.568	0.18
83_W	91_E	0.568	0.18
27_K	39_N	0.568	0.18
116_N	158_D	0.567	0.18
164_Y	194_A	0.564	0.18
224_G	232_G	0.564	0.18
97_D	218_S	0.560	0.18
39_N	43_F	0.558	0.18
37_M	156_T	0.556	0.18
180_F	231_Y	0.556	0.18
45_P	59_R	0.556	0.18
71_I	212_L	0.556	0.18
182_A	229_R	0.553	0.18
58_E	116_N	0.551	0.18
50_I	164_Y	0.550	0.18
55_D	150_D	0.548	0.18
96_W	169_D	0.545	0.18
84_S	163_H	0.544	0.18
87_Y	90_T	0.543	0.17
79_L	85_P	0.542	0.17
67_C	158_D	0.541	0.17
46_R	176_I	0.540	0.17
107_G	118_F	0.540	0.17
91_E	111_K	0.537	0.17
63_R	188_T	0.537	0.17
157_Y	179_K	0.536	0.17
207_S	211_L	0.535	0.17
35_N	42_N	0.530	0.17
178_I	226_K	0.530	0.17
75_T	214_T	0.528	0.17
198_K	216_I	0.526	0.17
29_Q	42_N	0.523	0.17
27_K	33_K	0.523	0.17
52_S	217_F	0.521	0.17
112_G	232_G	0.520	0.17
99_I	233_S	0.518	0.17
27_K	30_K	0.514	0.16
46_R	59_R	0.514	0.16
130_C	199_E	0.513	0.16
28_G	38_E	0.512	0.16
29_Q	41_V	0.511	0.16
146_A	219_M	0.510	0.16
142_I	199_E	0.507	0.16
41_V	183_I	0.504	0.16
107_G	162_P	0.504	0.16
82_G	100_L	0.504	0.16
53_Y	57_V	0.504	0.16
69_V	212_L	0.500	0.16
112_G	224_G	0.500	0.16

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3x1lH	1	0.8496	100	0.413	Contact Map
4w8vA	1	0.687	100	0.486	Contact Map
4n0lA	1	0.6951	99.9	0.646	Contact Map
4qtsC	1	0.5813	99.9	0.654	Contact Map
4w8wA	1	0.6585	99.9	0.691	Contact Map
3x1lC	3	0.7317	99.8	0.705	Contact Map
4w8zA	1	0.6341	98.4	0.862	Contact Map
4l6uA	1	0.6179	98.2	0.868	Contact Map
4qtsA	1	0.5854	97	0.897	Contact Map
3i4hX	1	0.6829	74.5	0.939	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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