Q97Y35 - SULSO - GREMLIN Contacts

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Q97Y35 - Uncharacterized protein

UniProt:	Q97Y35	Sequences: MEELIKKAKEYDIDINDLIIDAISRKDPKEAINLRIELAKKYITETEDYLKKGDAVQASEKAYKTAEEIVKALAEKFNIPEYQQALKEGRWYTYWLASAVNRLAKDLGDWVLNGWNSAYILHVWGFHEAKLSTADISEHLRKVKEMLDNVINIIGK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	156 (144)
Sequences:	140 (126)
Seq/√Len:	10.5

SULSO - Q97Y35 Q97WV2 Q97WV1 Q7LX87

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
47_E	144_K	4.700	1.00
40_K	151_I	3.760	0.98
144_K	148_D	2.966	0.93
7_K	10_E	2.643	0.88
6_K	9_K	2.420	0.83
43_I	147_L	2.411	0.83
81_E	85_A	2.317	0.80
116_N	139_H	2.155	0.75
43_I	65_T	2.147	0.75
96_L	115_W	2.138	0.74
19_I	118_A	2.130	0.74
113_N	142_K	2.105	0.73
124_W	130_K	2.089	0.72
66_A	143_V	1.989	0.69
71_K	128_E	1.987	0.69
51_K	137_S	1.962	0.67
64_K	67_E	1.934	0.66
70_V	136_I	1.843	0.62
63_Y	127_H	1.801	0.61
4_L	148_D	1.762	0.59
43_I	47_E	1.697	0.56
63_Y	125_G	1.693	0.56
82_Y	130_K	1.683	0.55
12_D	15_I	1.622	0.52
4_L	13_I	1.575	0.50
51_K	136_I	1.541	0.49
97_A	131_L	1.501	0.47
32_I	89_G	1.478	0.46
59_S	125_G	1.477	0.46
16_N	20_I	1.474	0.45
6_K	134_A	1.468	0.45
62_A	70_V	1.444	0.44
110_W	149_N	1.427	0.43
71_K	96_L	1.398	0.42
105_K	134_A	1.393	0.42
84_Q	87_K	1.381	0.41
65_T	147_L	1.362	0.40
18_L	22_A	1.339	0.39
99_A	127_H	1.325	0.39
66_A	115_W	1.309	0.38
55_A	125_G	1.288	0.37
38_L	49_Y	1.260	0.36
63_Y	67_E	1.248	0.35
128_E	136_I	1.247	0.35
101_N	132_S	1.227	0.34
35_R	130_K	1.215	0.34
97_A	130_K	1.215	0.34
71_K	136_I	1.213	0.34
110_W	145_E	1.211	0.34
63_Y	68_E	1.204	0.33
109_D	143_V	1.159	0.32
47_E	51_K	1.156	0.31
82_Y	85_A	1.150	0.31
16_N	26_K	1.149	0.31
111_V	151_I	1.140	0.31
35_R	124_W	1.117	0.30
52_K	152_N	1.114	0.30
68_E	125_G	1.103	0.29
17_D	29_K	1.088	0.29
13_I	143_V	1.088	0.29
16_N	21_D	1.085	0.29
64_K	127_H	1.081	0.28
85_A	120_I	1.081	0.28
38_L	41_K	1.079	0.28
125_G	131_L	1.078	0.28
135_D	152_N	1.070	0.28
105_K	140_L	1.054	0.27
8_A	46_T	1.049	0.27
32_I	84_Q	1.019	0.26
132_S	137_S	1.011	0.26
149_N	152_N	1.011	0.26
35_R	49_Y	1.010	0.26
39_A	68_E	1.007	0.26
5_I	9_K	1.003	0.26
102_R	145_E	1.001	0.25
45_E	80_P	0.987	0.25
104_A	132_S	0.986	0.25
46_T	53_G	0.976	0.25
101_N	135_D	0.968	0.24
64_K	68_E	0.957	0.24
78_N	107_L	0.952	0.24
25_R	152_N	0.951	0.24
109_D	154_I	0.949	0.24
5_I	17_D	0.948	0.24
67_E	127_H	0.946	0.24
69_I	146_M	0.944	0.24
38_L	42_Y	0.943	0.23
36_I	103_L	0.943	0.23
51_K	134_A	0.942	0.23
64_K	125_G	0.940	0.23
148_D	152_N	0.936	0.23
111_V	146_M	0.932	0.23
95_W	99_A	0.929	0.23
77_F	106_D	0.925	0.23
35_R	85_A	0.920	0.23
65_T	144_K	0.916	0.23
67_E	99_A	0.914	0.23
44_T	53_G	0.911	0.22
13_I	19_I	0.885	0.22
46_T	103_L	0.878	0.21
100_V	105_K	0.856	0.21
85_A	130_K	0.853	0.21
35_R	75_E	0.853	0.21
56_V	73_L	0.850	0.20
128_E	144_K	0.843	0.20
68_E	124_W	0.839	0.20
68_E	127_H	0.838	0.20
121_L	131_L	0.827	0.20
101_N	105_K	0.822	0.20
68_E	99_A	0.820	0.20
120_I	131_L	0.818	0.20
5_I	20_I	0.816	0.19
4_L	50_L	0.815	0.19
100_V	119_Y	0.811	0.19
44_T	83_Q	0.809	0.19
67_E	125_G	0.800	0.19
127_H	130_K	0.800	0.19
32_I	44_T	0.798	0.19
88_E	103_L	0.795	0.19
29_K	48_D	0.793	0.19
23_I	40_K	0.784	0.19
47_E	147_L	0.776	0.18
53_G	111_V	0.771	0.18
81_E	99_A	0.762	0.18
17_D	34_L	0.759	0.18
12_D	65_T	0.751	0.18
69_I	150_V	0.751	0.18
96_L	128_E	0.749	0.18
39_A	96_L	0.747	0.18
30_E	66_A	0.741	0.17
50_L	128_E	0.741	0.17
14_D	67_E	0.738	0.17
116_N	120_I	0.736	0.17
66_A	119_Y	0.734	0.17
6_K	10_E	0.733	0.17
21_D	31_A	0.726	0.17
51_K	154_I	0.725	0.17
39_A	128_E	0.724	0.17
8_A	37_E	0.724	0.17
16_N	31_A	0.714	0.17
148_D	151_I	0.705	0.16
35_R	127_H	0.705	0.16
40_K	44_T	0.704	0.16
7_K	24_S	0.699	0.16
77_F	124_W	0.696	0.16
75_E	114_G	0.695	0.16
35_R	64_K	0.691	0.16
4_L	30_E	0.685	0.16
7_K	11_Y	0.682	0.16
25_R	52_K	0.680	0.16
42_Y	49_Y	0.678	0.16
76_K	103_L	0.671	0.16
75_E	130_K	0.666	0.15
23_I	153_I	0.651	0.15
18_L	118_A	0.640	0.15
22_A	31_A	0.639	0.15
66_A	117_S	0.637	0.15
124_W	129_A	0.636	0.15
132_S	139_H	0.629	0.15
35_R	68_E	0.629	0.15
58_A	65_T	0.628	0.15
98_S	132_S	0.627	0.14
41_K	45_E	0.626	0.14
35_R	55_A	0.623	0.14
67_E	120_I	0.621	0.14
144_K	150_V	0.620	0.14
103_L	132_S	0.620	0.14
65_T	74_A	0.618	0.14
59_S	115_W	0.617	0.14
20_I	44_T	0.611	0.14
39_A	89_G	0.610	0.14
44_T	48_D	0.607	0.14
50_L	71_K	0.607	0.14
35_R	63_Y	0.604	0.14
81_E	95_W	0.603	0.14
30_E	134_A	0.591	0.14
21_D	133_T	0.589	0.14
13_I	20_I	0.589	0.14
83_Q	105_K	0.586	0.14
68_E	130_K	0.577	0.13
17_D	80_P	0.577	0.13
55_A	75_E	0.572	0.13
63_Y	119_Y	0.571	0.13
21_D	153_I	0.569	0.13
71_K	129_A	0.568	0.13
34_L	101_N	0.568	0.13
144_K	147_L	0.566	0.13
17_D	137_S	0.565	0.13
42_Y	105_K	0.564	0.13
105_K	138_E	0.561	0.13
14_D	112_L	0.559	0.13
81_E	88_E	0.559	0.13
41_K	76_K	0.556	0.13
71_K	104_A	0.555	0.13
13_I	18_L	0.553	0.13
111_V	118_A	0.553	0.13
77_F	147_L	0.551	0.13
81_E	121_L	0.541	0.13
52_K	135_D	0.540	0.13
135_D	143_V	0.538	0.13
23_I	137_S	0.536	0.13
7_K	52_K	0.535	0.12
62_A	143_V	0.533	0.12
68_E	81_E	0.532	0.12
97_A	119_Y	0.532	0.12
114_G	131_L	0.532	0.12
6_K	104_A	0.529	0.12
36_I	40_K	0.521	0.12
109_D	149_N	0.516	0.12
143_V	154_I	0.515	0.12
80_P	103_L	0.513	0.12
49_Y	121_L	0.512	0.12
97_A	139_H	0.507	0.12
16_N	46_T	0.507	0.12
9_K	12_D	0.503	0.12
55_A	124_W	0.500	0.12

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2jpuA	1	0.7885	100	0.365	Contact Map
2hsbA	2	0.7628	98.2	0.842	Contact Map
1wolA	1	0.7436	98.1	0.845	Contact Map
1ufbA	3	0.7436	97.3	0.87	Contact Map
3o10A	2	0.7821	97	0.876	Contact Map
1o3uA	2	0.6923	96.9	0.876	Contact Map
4nqfA	2	0.8462	95.8	0.89	Contact Map
1mntA	2	0.3205	68.9	0.93	Contact Map
2oo2A	2	0.4744	38.7	0.941	Contact Map
4ndwA	2	0.4679	32.1	0.944	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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