Q97Y24 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97Y24 - Dihydrolipoamide dehydrogenase (PdhD-2)

UniProt:	Q97Y24	Sequences: MKNNIMKVVIIGAGPAGVYSALTLSKHAKVTLIEREEKLGGTCVLYGCIPTKSILSQLIISRQASNMSLNTLREYALTSINTISKSLEHLLNSHGIEVIHANGFLRSSMVHASNTSLAADKVLVSTGTRRERLGKVKFTEDLAYTNEDYNKVVIVGGDAGGIELGWMMKKLGKEVHLIDKNDLLLQNIDRTLSEIVTNFLSQIGIKLYLGKKVSKIDETSVTLEDNQKISGDAVFVTFGRKPNIEGFEEIPHEKYIYVDEYLRTQIPNIYAAGDIIGTFTAHEAIYAGIIAAKNMLGEKREFIVEGIPKVIYIYPQIAYVGTTNGNCVTFNTLNLTRTIVERESEGFLKICERDNRVIGAVAFMPYAEDVISLISVLIRYQISLKDTIDLVMPHPSYLEAITEALNMLQSKG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	412 (388)
Sequences:	18488 (12367)
Seq/√Len:	627.9

ECOLI - STHA GSHR RCLA DLDH HCAD NORW DHNA NIRB PRET
BACSU - DLDH1 DLDH2 DLDH3 NASB NASD YUMB YJLD DHNA
HALSA - DLDH Q9HSN0 Q9HP48 Q9HR27
SULSO - Q97Y24 Q97VQ4 Q97VD9 Q97Z19 Q97XZ3 Q97WE3 Q97YT2 Q97WG1 Q97U72

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
153_V	231_G	4.386	1.00
259_D	263_R	3.690	1.00
151_K	174_E	3.452	1.00
35_R	102_N	3.412	1.00
176_H	208_Y	3.087	1.00
174_E	206_K	2.693	1.00
197_T	201_S	2.682	1.00
360_A	374_I	2.680	1.00
109_M	116_S	2.593	1.00
7_K	29_K	2.556	1.00
6_M	31_T	2.541	1.00
138_F	141_D	2.528	1.00
141_D	145_T	2.467	1.00
20_S	123_L	2.450	1.00
129_R	243_N	2.403	1.00
129_R	245_E	2.381	1.00
208_Y	227_Q	2.373	1.00
31_T	99_I	2.367	1.00
217_D	222_T	2.357	1.00
33_I	117_L	2.340	1.00
373_L	392_M	2.303	1.00
131_E	241_K	2.263	1.00
121_K	268_N	2.245	1.00
215_K	222_T	2.244	1.00
6_M	97_E	2.219	1.00
8_V	24_L	2.217	1.00
111_H	114_N	2.174	1.00
134_G	215_K	2.170	1.00
119_A	122_V	2.168	1.00
249_E	257_Y	2.150	1.00
355_N	385_K	2.133	1.00
107_S	266_I	2.133	1.00
260_E	301_E	2.131	1.00
153_V	178_I	2.090	1.00
106_R	109_M	2.086	1.00
322_T	327_C	2.057	1.00
356_R	381_Q	2.049	1.00
111_H	116_S	2.039	1.00
9_V	117_L	2.034	1.00
151_K	232_D	2.028	1.00
9_V	33_I	1.961	1.00
291_A	295_M	1.942	1.00
148_D	173_K	1.922	1.00
16_A	272_A	1.901	1.00
190_R	325_G	1.900	1.00
7_K	120_D	1.890	1.00
180_K	212_K	1.886	1.00
182_D	210_G	1.881	1.00
377_L	382_I	1.879	1.00
123_L	295_M	1.842	1.00
141_D	144_Y	1.842	1.00
222_T	228_K	1.838	1.00
140_E	145_T	1.829	1.00
251_P	255_Y	1.818	1.00
152_V	173_K	1.805	1.00
162_I	177_L	1.804	1.00
129_R	241_K	1.771	1.00
109_M	118_A	1.767	1.00
212_K	224_E	1.762	1.00
214_S	224_E	1.743	1.00
214_S	222_T	1.728	1.00
263_R	267_P	1.726	1.00
169_K	174_E	1.721	1.00
109_M	112_A	1.708	1.00
270_Y	294_N	1.707	1.00
104_F	108_S	1.704	1.00
152_V	168_M	1.674	1.00
153_V	221_V	1.674	1.00
211_K	225_D	1.671	1.00
142_L	145_T	1.663	1.00
208_Y	211_K	1.648	1.00
139_T	145_T	1.634	1.00
138_F	142_L	1.612	1.00
176_H	206_K	1.611	1.00
104_F	107_S	1.611	1.00
362_A	367_A	1.605	1.00
29_K	97_E	1.603	1.00
251_P	257_Y	1.603	1.00
35_R	103_G	1.586	1.00
9_V	110_V	1.579	1.00
169_K	205_I	1.567	1.00
139_T	143_A	1.563	1.00
99_I	115_T	1.562	1.00
138_F	145_T	1.558	1.00
68_S	71_T	1.552	1.00
140_E	144_Y	1.548	1.00
9_V	119_A	1.537	1.00
183_L	193_S	1.513	1.00
121_K	295_M	1.507	1.00
383_S	386_D	1.494	1.00
124_V	275_I	1.486	1.00
126_T	275_I	1.453	1.00
350_I	360_A	1.442	1.00
261_Y	294_N	1.437	1.00
9_V	31_T	1.432	1.00
23_T	293_K	1.423	1.00
8_V	123_L	1.411	1.00
199_F	202_Q	1.407	1.00
123_L	272_A	1.405	1.00
7_K	31_T	1.400	1.00
190_R	194_E	1.385	1.00
150_N	232_D	1.373	1.00
216_I	234_V	1.365	1.00
71_T	74_E	1.365	1.00
197_T	207_L	1.357	1.00
189_D	349_K	1.357	1.00
195_I	363_F	1.344	1.00
140_E	143_A	1.342	1.00
327_C	351_C	1.338	1.00
31_T	117_L	1.328	1.00
104_F	111_H	1.320	1.00
99_I	117_L	1.319	1.00
262_L	276_I	1.311	1.00
88_E	100_H	1.311	1.00
198_N	201_S	1.310	1.00
263_R	268_N	1.290	1.00
138_F	144_Y	1.290	1.00
178_I	229_I	1.290	1.00
11_I	124_V	1.289	1.00
139_T	144_Y	1.281	1.00
112_A	117_L	1.280	1.00
27_H	293_K	1.277	1.00
183_L	190_R	1.275	1.00
288_G	292_A	1.268	1.00
170_K	203_I	1.266	1.00
256_I	275_I	1.265	1.00
162_I	313_I	1.259	1.00
292_A	296_L	1.258	1.00
151_K	230_S	1.257	1.00
104_F	122_V	1.253	1.00
11_I	103_G	1.236	1.00
152_V	233_A	1.233	1.00
316_Q	368_E	1.225	1.00
197_T	209_L	1.224	1.00
380_Y	386_D	1.221	1.00
121_K	270_Y	1.220	1.00
324_N	349_K	1.214	1.00
16_A	284_A	1.212	1.00
150_N	174_E	1.211	1.00
211_K	227_Q	1.205	1.00
151_K	176_H	1.204	1.00
157_G	184_L	1.204	1.00
293_K	298_E	1.202	1.00
198_N	202_Q	1.200	1.00
179_D	209_L	1.194	1.00
89_H	93_S	1.191	1.00
217_D	228_K	1.188	1.00
141_D	146_N	1.183	1.00
191_T	329_T	1.166	1.00
88_E	92_N	1.156	1.00
266_I	269_I	1.152	1.00
261_Y	301_E	1.147	1.00
262_L	291_A	1.146	1.00
139_T	142_L	1.140	1.00
78_T	82_T	1.137	1.00
24_L	292_A	1.130	1.00
155_V	234_V	1.129	1.00
105_L	116_S	1.129	1.00
317_I	363_F	1.127	1.00
140_E	146_N	1.126	1.00
194_E	197_T	1.124	1.00
39_L	98_V	1.120	1.00
208_Y	229_I	1.118	1.00
157_G	179_D	1.117	1.00
142_L	146_N	1.117	1.00
201_S	206_K	1.114	1.00
107_S	269_I	1.105	1.00
183_L	197_T	1.104	1.00
49_I	52_K	1.100	1.00
134_G	137_K	1.078	1.00
199_F	203_I	1.070	1.00
6_M	99_I	1.061	1.00
372_S	393_P	1.060	1.00
223_L	229_I	1.059	1.00
33_I	112_A	1.056	1.00
69_L	73_R	1.055	1.00
211_K	224_E	1.052	1.00
219_T	230_S	1.052	1.00
23_T	27_H	1.051	1.00
188_I	309_K	1.050	1.00
138_F	143_A	1.040	1.00
263_R	294_N	1.040	1.00
382_I	386_D	1.039	1.00
188_I	319_Y	1.038	1.00
253_E	277_G	1.037	1.00
10_I	21_A	1.032	1.00
272_A	291_A	1.030	1.00
249_E	265_Q	1.022	1.00
374_I	401_I	1.019	1.00
90_L	94_H	1.017	1.00
73_R	77_L	1.015	1.00
143_A	146_N	1.013	1.00
291_A	294_N	1.011	1.00
33_I	99_I	1.010	1.00
81_N	85_K	1.005	1.00
13_A	34_E	1.005	1.00
257_Y	265_Q	1.000	1.00
348_L	362_A	0.999	1.00
332_T	364_M	0.995	1.00
155_V	236_V	0.990	1.00
74_E	78_T	0.989	1.00
51_T	54_I	0.985	1.00
293_K	300_R	0.984	1.00
162_I	200_L	0.982	1.00
192_L	347_F	0.977	1.00
263_R	270_Y	0.976	1.00
184_L	197_T	0.973	1.00
77_L	81_N	0.972	1.00
139_T	146_N	0.972	1.00
318_A	371_I	0.971	1.00
256_I	271_A	0.965	1.00
192_L	363_F	0.963	1.00
348_L	400_A	0.960	1.00
355_N	384_L	0.958	1.00
182_D	190_R	0.954	1.00
153_V	229_I	0.952	1.00
366_Y	369_D	0.950	1.00
23_T	26_K	0.949	1.00
50_P	53_S	0.946	1.00
350_I	374_I	0.944	1.00
166_W	170_K	0.936	1.00
258_V	271_A	0.936	1.00
179_D	186_Q	0.935	1.00
27_H	296_L	0.934	1.00
123_L	291_A	0.930	1.00
151_K	173_K	0.930	1.00
261_Y	299_K	0.927	1.00
372_S	398_L	0.923	1.00
108_S	268_N	0.921	1.00
131_E	238_F	0.920	1.00
322_T	326_N	0.920	1.00
101_A	112_A	0.918	1.00
258_V	276_I	0.917	1.00
181_N	186_Q	0.912	1.00
177_L	207_L	0.911	1.00
336_T	339_I	0.911	1.00
178_I	211_K	0.909	1.00
73_R	76_A	0.908	1.00
310_V	393_P	0.905	1.00
263_R	266_I	0.904	1.00
195_I	198_N	0.904	1.00
105_L	111_H	0.904	1.00
196_V	363_F	0.898	1.00
155_V	238_F	0.898	1.00
97_E	115_T	0.894	1.00
309_K	319_Y	0.890	1.00
87_L	91_L	0.889	1.00
192_L	361_V	0.888	1.00
176_H	231_G	0.884	1.00
184_L	209_L	0.881	1.00
169_K	203_I	0.881	1.00
195_I	199_F	0.880	1.00
154_I	161_G	0.877	1.00
155_V	213_V	0.876	1.00
50_P	54_I	0.876	1.00
79_S	83_I	0.875	1.00
51_T	55_L	0.874	1.00
290_I	302_F	0.872	1.00
87_L	90_L	0.872	1.00
6_M	121_K	0.871	1.00
264_T	271_A	0.870	1.00
89_H	92_N	0.865	1.00
161_G	179_D	0.865	1.00
6_M	29_K	0.862	1.00
20_S	291_A	0.859	1.00
202_Q	345_E	0.858	1.00
320_V	378_I	0.856	1.00
196_V	317_I	0.855	1.00
242_P	255_Y	0.854	1.00
178_I	208_Y	0.853	1.00
188_I	317_I	0.853	1.00
323_T	326_N	0.851	1.00
337_R	340_V	0.850	1.00
20_S	288_G	0.844	1.00
122_V	269_I	0.844	1.00
23_T	292_A	0.843	1.00
78_T	81_N	0.843	1.00
22_L	94_H	0.843	1.00
252_H	257_Y	0.843	1.00
306_G	378_I	0.842	1.00
191_T	349_K	0.842	1.00
290_I	294_N	0.842	1.00
194_E	198_N	0.841	1.00
52_K	55_L	0.840	1.00
9_V	122_V	0.839	1.00
152_V	235_F	0.834	1.00
20_S	272_A	0.833	1.00
91_L	98_V	0.833	1.00
25_S	30_V	0.832	1.00
271_A	275_I	0.830	1.00
165_G	177_L	0.825	1.00
32_L	91_L	0.825	1.00
258_V	262_L	0.821	1.00
373_L	376_V	0.819	1.00
43_C	48_C	0.815	1.00
286_Y	289_I	0.814	1.00
128_T	240_R	0.814	1.00
99_I	102_N	0.814	1.00
165_G	205_I	0.813	1.00
112_A	115_T	0.809	1.00
206_K	227_Q	0.808	1.00
35_R	243_N	0.807	1.00
33_I	103_G	0.806	1.00
23_T	289_I	0.805	1.00
211_K	223_L	0.799	1.00
151_K	231_G	0.797	1.00
20_S	292_A	0.793	1.00
79_S	82_T	0.793	1.00
329_T	347_F	0.793	1.00
10_I	20_S	0.791	1.00
310_V	368_E	0.791	1.00
132_R	236_V	0.791	1.00
199_F	345_E	0.790	1.00
19_Y	285_I	0.789	1.00
324_N	351_C	0.788	1.00
357_V	374_I	0.788	1.00
180_K	186_Q	0.787	1.00
31_T	97_E	0.786	1.00
82_T	85_K	0.785	1.00
27_H	298_E	0.782	1.00
178_I	223_L	0.781	1.00
86_S	90_L	0.780	1.00
13_A	32_L	0.780	1.00
200_L	207_L	0.779	1.00
245_E	248_E	0.778	1.00
244_I	250_I	0.774	1.00
183_L	325_G	0.774	1.00
132_R	138_F	0.774	1.00
76_A	79_S	0.771	1.00
13_A	39_L	0.771	1.00
335_L	338_T	0.769	1.00
104_F	110_V	0.768	1.00
57_Q	72_L	0.763	1.00
382_I	387_T	0.762	1.00
270_Y	295_M	0.761	1.00
7_K	117_L	0.760	1.00
377_L	387_T	0.760	1.00
320_V	360_A	0.757	1.00
107_S	268_N	0.752	1.00
105_L	108_S	0.751	1.00
189_D	361_V	0.750	1.00
57_Q	75_Y	0.749	1.00
85_K	88_E	0.749	1.00
376_V	380_Y	0.748	1.00
379_R	389_D	0.747	1.00
18_V	32_L	0.745	1.00
183_L	194_E	0.742	1.00
184_L	207_L	0.736	1.00
335_L	339_I	0.728	1.00
24_L	296_L	0.727	1.00
81_N	84_S	0.726	1.00
147_E	233_A	0.725	1.00
331_N	334_N	0.725	1.00
38_K	84_S	0.724	1.00
75_Y	79_S	0.723	1.00
37_E	46_Y	0.723	1.00
133_L	236_V	0.722	1.00
164_L	235_F	0.720	1.00
262_L	294_N	0.719	1.00
136_V	236_V	0.719	1.00
262_L	290_I	0.718	1.00
37_E	100_H	0.716	1.00
138_F	146_N	0.716	1.00
376_V	382_I	0.716	1.00
199_F	363_F	0.715	1.00
24_L	295_M	0.714	1.00
303_I	379_R	0.713	1.00
356_R	383_S	0.712	1.00
125_S	272_A	0.711	1.00
25_S	96_I	0.710	1.00
154_I	235_F	0.709	1.00
8_V	295_M	0.709	1.00
384_L	388_I	0.708	1.00
49_I	53_S	0.708	1.00
316_Q	366_Y	0.707	1.00
289_I	293_K	0.706	1.00
318_A	367_A	0.704	1.00
34_E	38_K	0.703	1.00
6_M	9_V	0.702	1.00
386_D	389_D	0.700	1.00
102_N	115_T	0.700	1.00
196_V	313_I	0.698	1.00
21_A	96_I	0.694	1.00
40_G	44_V	0.694	1.00
142_L	168_M	0.692	1.00
360_A	378_I	0.692	1.00
22_L	26_K	0.690	1.00
91_L	95_G	0.686	1.00
357_V	378_I	0.684	1.00
159_A	311_I	0.683	1.00
91_L	96_I	0.682	1.00
166_W	203_I	0.680	1.00
272_A	288_G	0.680	1.00
223_L	227_Q	0.678	1.00
122_V	268_N	0.675	1.00
249_E	252_H	0.671	1.00
244_I	275_I	0.668	1.00
76_A	80_I	0.667	1.00
77_L	80_I	0.667	1.00
102_N	246_G	0.667	1.00
184_L	193_S	0.663	1.00
10_I	17_G	0.662	1.00
327_C	358_I	0.662	1.00
376_V	390_L	0.661	1.00
375_S	379_R	0.661	1.00
97_E	100_H	0.660	1.00
283_E	287_A	0.658	1.00
154_I	165_G	0.652	1.00
24_L	30_V	0.651	1.00
323_T	361_V	0.650	1.00
119_A	266_I	0.648	1.00
102_N	113_S	0.648	1.00
108_S	266_I	0.646	1.00
256_I	264_T	0.645	1.00
17_G	21_A	0.645	1.00
244_I	255_Y	0.643	1.00
161_G	180_K	0.642	1.00
55_L	167_M	0.642	1.00
344_S	365_P	0.639	1.00
106_R	116_S	0.635	1.00
37_E	101_A	0.634	1.00
283_E	307_I	0.633	1.00
374_I	378_I	0.633	1.00
58_L	170_K	0.629	1.00
253_E	257_Y	0.629	1.00
192_L	317_I	0.628	1.00
54_I	73_R	0.628	1.00
200_L	205_I	0.628	1.00
71_T	75_Y	0.627	1.00
49_I	54_I	0.626	1.00
379_R	390_L	0.626	1.00
74_E	77_L	0.626	1.00
67_M	72_L	0.624	1.00
91_L	94_H	0.623	1.00
213_V	221_V	0.621	1.00
376_V	387_T	0.620	1.00
104_F	119_A	0.620	1.00
286_Y	302_F	0.616	1.00
8_V	292_A	0.615	1.00
352_E	358_I	0.614	1.00
82_T	339_I	0.613	1.00
167_M	171_L	0.612	1.00
152_V	175_V	0.612	1.00
85_K	89_H	0.610	1.00
332_T	400_A	0.610	1.00
26_K	94_H	0.609	1.00
251_P	277_G	0.608	1.00
279_F	307_I	0.607	1.00
272_A	295_M	0.605	1.00
101_A	113_S	0.605	1.00
75_Y	78_T	0.605	1.00
124_V	247_F	0.604	1.00
223_L	226_N	0.603	1.00
151_K	169_K	0.603	1.00
270_Y	291_A	0.603	1.00
230_S	233_A	0.603	1.00
250_I	256_I	0.602	1.00
185_L	196_V	0.598	1.00
193_S	197_T	0.598	1.00
360_A	371_I	0.598	1.00
33_I	101_A	0.596	1.00
252_H	255_Y	0.596	1.00
161_G	237_T	0.595	1.00
394_H	399_E	0.594	1.00
162_I	184_L	0.593	1.00
195_I	347_F	0.592	1.00
170_K	314_Y	0.591	1.00
99_I	103_G	0.591	1.00
21_A	32_L	0.590	1.00
192_L	195_I	0.590	1.00
100_H	103_G	0.590	1.00
106_R	111_H	0.589	1.00
132_R	137_K	0.588	1.00
45_L	84_S	0.588	1.00
126_T	247_F	0.588	1.00
316_Q	397_Y	0.583	1.00
191_T	347_F	0.583	1.00
320_V	375_S	0.582	1.00
369_D	398_L	0.582	1.00
70_N	74_E	0.581	1.00
150_N	173_K	0.580	1.00
83_I	87_L	0.579	1.00
314_Y	365_P	0.578	1.00
70_N	73_R	0.578	1.00
307_I	311_I	0.577	1.00
7_K	118_A	0.577	1.00
70_N	146_N	0.576	1.00
44_V	48_C	0.575	1.00
41_G	44_V	0.575	1.00
153_V	234_V	0.575	1.00
216_I	236_V	0.573	1.00
362_A	370_V	0.573	1.00
176_H	229_I	0.572	1.00
206_K	209_L	0.571	1.00
80_I	83_I	0.570	1.00
376_V	392_M	0.569	1.00
90_L	93_S	0.569	1.00
8_V	30_V	0.568	1.00
16_A	125_S	0.567	1.00
39_L	88_E	0.567	1.00
84_S	88_E	0.565	1.00
354_D	381_Q	0.565	1.00
328_V	352_E	0.564	1.00
385_K	389_D	0.562	1.00
347_F	350_I	0.562	1.00
20_S	24_L	0.559	1.00
332_T	335_L	0.559	1.00
319_Y	361_V	0.558	1.00
274_D	284_A	0.558	1.00
323_T	351_C	0.558	1.00
38_K	46_Y	0.557	1.00
133_L	238_F	0.556	1.00
124_V	246_G	0.555	1.00
53_S	56_S	0.554	1.00
264_T	269_I	0.554	1.00
203_I	313_I	0.553	1.00
104_F	124_V	0.552	1.00
180_K	238_F	0.551	1.00
287_A	304_V	0.551	1.00
244_I	247_F	0.551	1.00
29_K	120_D	0.551	1.00
216_I	221_V	0.547	1.00
335_L	340_V	0.547	1.00
48_C	51_T	0.545	1.00
159_A	309_K	0.544	1.00
293_K	299_K	0.543	0.99
293_K	297_G	0.541	0.99
164_L	167_M	0.541	0.99
334_N	337_R	0.541	0.99
168_M	173_K	0.541	0.99
336_T	340_V	0.539	0.99
136_V	216_I	0.539	0.99
40_G	43_C	0.537	0.99
166_W	200_L	0.536	0.99
162_I	207_L	0.535	0.99
360_A	401_I	0.535	0.99
203_I	314_Y	0.535	0.99
322_T	358_I	0.535	0.99
328_V	331_N	0.534	0.99
105_L	109_M	0.532	0.99
51_T	164_L	0.531	0.99
25_S	95_G	0.530	0.99
251_P	265_Q	0.530	0.99
341_E	348_L	0.530	0.99
373_L	398_L	0.529	0.99
151_K	233_A	0.528	0.99
370_V	397_Y	0.528	0.99
188_I	311_I	0.528	0.99
47_G	50_P	0.526	0.99
271_A	276_I	0.525	0.99
74_E	146_N	0.523	0.99
8_V	20_S	0.523	0.99
52_K	56_S	0.522	0.99
378_I	382_I	0.522	0.99
249_E	254_K	0.521	0.99
80_I	84_S	0.521	0.99
191_T	194_E	0.521	0.99
286_Y	402_T	0.521	0.99
119_A	268_N	0.518	0.99
206_K	229_I	0.518	0.99
88_E	98_V	0.517	0.99
8_V	121_K	0.514	0.99
46_Y	140_E	0.514	0.99
178_I	231_G	0.510	0.99
15_P	281_A	0.510	0.99
332_T	339_I	0.510	0.99
95_G	103_G	0.509	0.99
306_G	375_S	0.509	0.99
333_L	339_I	0.509	0.99
364_M	367_A	0.508	0.99
372_S	375_S	0.507	0.99
371_I	393_P	0.506	0.99
132_R	136_V	0.505	0.99
48_C	52_K	0.505	0.99
375_S	390_L	0.504	0.99
201_S	207_L	0.504	0.99
10_I	30_V	0.503	0.99
22_L	90_L	0.503	0.99
69_L	72_L	0.502	0.99
20_S	295_M	0.502	0.99
190_R	193_S	0.501	0.99
120_D	268_N	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1ojtA	2	1	100	0.231	Contact Map
3urhA	2	0.9879	100	0.241	Contact Map
3ladA	2	0.9951	100	0.242	Contact Map
1zmdA	4	1	100	0.243	Contact Map
1lvlA	2	0.9927	100	0.246	Contact Map
2qaeA	2	0.9879	100	0.25	Contact Map
1dxlA	2	0.9951	100	0.254	Contact Map
1v59A	2	1	100	0.257	Contact Map
4jq9A	3	0.9951	100	0.257	Contact Map
4dnaA	2	0.9903	100	0.258	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0122 seconds.