Q97Y13 - SULSO - GREMLIN Contacts

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Q97Y13 - Uncharacterized protein

UniProt:	Q97Y13	Sequences: MSVSKIYLLDHGKISADLAWFLPNPMTIEDMKNPKPRNWVDVSVMSAVIEHKDGVILFDTGIPDNVSGKWPQIALSVFPVTKYSEENKMENQLKKIGYKPEDIHFIILSHLHLDHTGSLELFKNSKPDVIVHEKELKYALLNLWLNKPVPYLLRDLEILREMNIVPMSTEYLEILPGVELLLIGGHTPGSILLKVRTQNDNNYIFTGDFIHVPEELSFESKGWLLGNAEEYYTRIRLLKSMQKLPRTNIIISHDPKLWEKYPKAPKELK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	269 (223)
Sequences:	4584 (3364)
Seq/√Len:	225.2

BACSU - YTNP YFLN YOBT YYBB YQJP
HALSA - Q9HQ42 Q9HSH2 Q9HRG5
SULSO - Q97Y13 Q97YH8 Q97UR2 Q97XZ1 Q97YZ2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
183_I	192_L	5.706	1.00
50_E	55_V	4.563	1.00
133_E	137_K	4.014	1.00
105_F	130_I	3.686	1.00
133_E	168_S	3.557	1.00
58_F	109_S	3.213	1.00
128_D	165_V	2.928	1.00
54_G	105_F	2.750	1.00
132_H	191_I	2.729	1.00
227_N	230_E	2.673	1.00
99_K	102_D	2.672	1.00
54_G	104_H	2.473	1.00
55_V	103_I	2.345	1.00
183_I	190_S	2.160	1.00
55_V	98_Y	2.096	1.00
179_E	196_R	2.063	1.00
190_S	207_G	2.022	1.00
173_E	177_G	2.018	1.00
194_K	202_N	2.006	1.00
94_K	99_K	2.005	1.00
105_F	128_D	1.993	1.00
58_F	193_L	1.942	1.00
50_E	98_Y	1.941	1.00
180_L	193_L	1.939	1.00
184_G	234_R	1.917	1.00
108_L	119_L	1.914	1.00
107_I	193_L	1.871	1.00
241_M	245_P	1.861	1.00
196_R	202_N	1.860	1.00
101_E	123_K	1.851	1.00
173_E	176_P	1.829	1.00
230_E	233_T	1.774	1.00
109_S	193_L	1.764	1.00
155_D	159_L	1.757	1.00
55_V	104_H	1.751	1.00
181_L	194_K	1.745	1.00
178_V	195_V	1.737	1.00
49_I	58_F	1.672	1.00
209_F	238_L	1.639	1.00
98_Y	102_D	1.581	1.00
56_I	105_F	1.576	1.00
135_E	187_T	1.532	1.00
194_K	204_I	1.528	1.00
179_E	194_K	1.518	1.00
57_L	103_I	1.515	1.00
91_N	94_K	1.495	1.00
56_I	178_V	1.465	1.00
236_R	240_S	1.463	1.00
7_Y	50_E	1.460	1.00
240_S	244_L	1.449	1.00
242_Q	249_I	1.440	1.00
90_E	100_P	1.434	1.00
180_L	191_I	1.410	1.00
233_T	237_L	1.406	1.00
125_S	128_D	1.400	1.00
194_K	241_M	1.397	1.00
192_L	204_I	1.392	1.00
198_Q	201_N	1.378	1.00
156_L	159_L	1.373	1.00
136_L	166_P	1.366	1.00
6_I	203_Y	1.360	1.00
119_L	129_V	1.353	1.00
106_I	129_V	1.350	1.00
48_V	103_I	1.349	1.00
136_L	140_L	1.349	1.00
111_L	131_V	1.343	1.00
58_F	205_F	1.336	1.00
109_S	207_G	1.335	1.00
93_L	98_Y	1.314	1.00
55_V	102_D	1.308	1.00
153_L	157_E	1.301	1.00
48_V	98_Y	1.297	1.00
197_T	201_N	1.292	1.00
101_E	124_N	1.269	1.00
51_H	54_G	1.256	1.00
155_D	158_I	1.238	1.00
48_V	57_L	1.234	1.00
157_E	160_R	1.227	1.00
51_H	56_I	1.207	1.00
51_H	177_G	1.199	1.00
206_T	249_I	1.191	1.00
201_N	248_N	1.186	1.00
167_M	191_I	1.141	1.00
9_L	48_V	1.133	1.00
9_L	92_Q	1.128	1.00
183_I	234_R	1.127	1.00
137_K	141_L	1.108	1.00
171_Y	179_E	1.106	1.00
135_E	139_A	1.086	1.00
92_Q	95_K	1.082	1.00
94_K	100_P	1.069	1.00
138_Y	188_P	1.064	1.00
111_L	116_T	1.044	1.00
181_L	192_L	1.042	1.00
90_E	121_L	1.036	1.00
232_Y	236_R	1.035	1.00
47_A	250_I	1.029	1.00
181_L	204_I	1.025	1.00
205_F	250_I	1.021	1.00
57_L	60_T	1.013	1.00
58_F	107_I	1.013	1.00
47_A	205_F	1.010	1.00
130_I	167_M	1.010	1.00
219_E	236_R	1.001	1.00
15_S	41_D	1.001	1.00
237_L	241_M	0.997	1.00
233_T	236_R	0.996	1.00
225_L	235_I	0.993	1.00
60_T	119_L	0.989	1.00
151_Y	155_D	0.977	1.00
111_L	139_A	0.976	1.00
106_I	119_L	0.975	1.00
55_V	93_L	0.975	1.00
49_I	178_V	0.975	1.00
64_D	91_N	0.974	1.00
192_L	209_F	0.970	1.00
103_I	122_F	0.970	1.00
154_R	157_E	0.969	1.00
241_M	247_T	0.965	1.00
130_I	165_V	0.964	1.00
88_K	91_N	0.962	1.00
202_N	247_T	0.962	1.00
152_L	156_L	0.955	1.00
151_Y	159_L	0.948	1.00
49_I	56_I	0.947	1.00
18_L	23_P	0.945	1.00
221_K	232_Y	0.943	1.00
181_L	241_M	0.942	1.00
210_I	251_I	0.937	1.00
204_I	247_T	0.936	1.00
13_K	41_D	0.923	1.00
242_Q	247_T	0.918	1.00
85_E	91_N	0.911	0.99
87_N	95_K	0.908	0.99
48_V	55_V	0.902	0.99
151_Y	156_L	0.894	0.99
240_S	243_K	0.892	0.99
118_S	121_L	0.890	0.99
171_Y	182_L	0.887	0.99
8_L	45_M	0.885	0.99
206_T	251_I	0.882	0.99
122_F	125_S	0.868	0.99
184_G	230_E	0.866	0.99
106_I	122_F	0.865	0.99
87_N	91_N	0.862	0.99
9_L	96_I	0.859	0.99
192_L	238_L	0.859	0.99
225_L	228_A	0.859	0.99
209_F	234_R	0.829	0.99
235_I	239_K	0.827	0.99
153_L	158_I	0.820	0.99
196_R	200_D	0.815	0.99
105_F	175_L	0.814	0.99
143_L	146_N	0.811	0.99
8_L	47_A	0.810	0.99
219_E	239_K	0.810	0.99
231_Y	235_I	0.810	0.99
65_N	68_G	0.803	0.99
35_K	38_N	0.794	0.99
48_V	96_I	0.793	0.99
63_P	118_S	0.787	0.98
134_K	137_K	0.787	0.98
155_D	160_R	0.787	0.98
167_M	180_L	0.786	0.98
18_L	22_L	0.785	0.98
212_V	215_E	0.779	0.98
197_T	200_D	0.771	0.98
150_P	153_L	0.768	0.98
174_I	177_G	0.766	0.98
15_S	39_W	0.762	0.98
237_L	240_S	0.761	0.98
17_D	38_N	0.759	0.98
154_R	158_I	0.757	0.98
108_L	129_V	0.748	0.98
112_H	115_H	0.747	0.98
107_I	191_I	0.747	0.98
192_L	234_R	0.745	0.98
153_L	159_L	0.744	0.98
206_T	210_I	0.735	0.98
100_P	121_L	0.728	0.97
46_S	89_M	0.727	0.97
111_L	135_E	0.726	0.97
202_N	245_P	0.726	0.97
203_Y	250_I	0.726	0.97
171_Y	177_G	0.721	0.97
195_V	205_F	0.718	0.97
236_R	239_K	0.717	0.97
134_K	168_S	0.715	0.97
229_E	233_T	0.714	0.97
144_W	147_K	0.713	0.97
57_L	106_I	0.712	0.97
205_F	252_S	0.707	0.97
228_A	232_Y	0.705	0.97
194_K	247_T	0.705	0.97
120_E	123_K	0.699	0.97
142_N	145_L	0.696	0.97
20_W	23_P	0.695	0.97
211_H	216_L	0.693	0.97
137_K	140_L	0.690	0.96
124_N	128_D	0.690	0.96
93_L	103_I	0.688	0.96
58_F	207_G	0.688	0.96
229_E	232_Y	0.685	0.96
108_L	116_T	0.681	0.96
204_I	242_Q	0.680	0.96
56_I	107_I	0.680	0.96
12_G	61_G	0.679	0.96
131_V	136_L	0.678	0.96
103_I	128_D	0.675	0.96
173_E	179_E	0.675	0.96
107_I	178_V	0.675	0.96
7_Y	96_I	0.674	0.96
135_E	189_G	0.673	0.96
18_L	38_N	0.671	0.96
161_E	164_I	0.670	0.96
16_A	20_W	0.668	0.96
170_E	182_L	0.667	0.96
178_V	193_L	0.664	0.96
204_I	238_L	0.663	0.96
17_D	20_W	0.661	0.96
153_L	156_L	0.660	0.95
19_A	25_P	0.660	0.95
61_G	108_L	0.656	0.95
172_L	177_G	0.652	0.95
168_S	172_L	0.646	0.95
21_F	24_N	0.646	0.95
194_K	245_P	0.642	0.95
206_T	252_S	0.640	0.95
62_I	66_V	0.639	0.95
152_L	158_I	0.637	0.95
10_D	13_K	0.636	0.95
230_E	234_R	0.634	0.94
210_I	215_E	0.633	0.94
131_V	166_P	0.633	0.94
90_E	94_K	0.632	0.94
173_E	196_R	0.630	0.94
172_L	175_L	0.630	0.94
177_G	196_R	0.628	0.94
133_E	166_P	0.625	0.94
60_T	118_S	0.624	0.94
225_L	231_Y	0.624	0.94
214_E	218_F	0.623	0.94
172_L	180_L	0.623	0.94
134_K	184_G	0.622	0.94
16_A	21_F	0.620	0.94
22_L	25_P	0.620	0.94
156_L	160_R	0.619	0.94
54_G	175_L	0.616	0.94
47_A	203_Y	0.613	0.93
16_A	19_A	0.613	0.93
19_A	23_P	0.613	0.93
68_G	85_E	0.613	0.93
59_D	253_H	0.612	0.93
142_N	146_N	0.612	0.93
151_Y	154_R	0.609	0.93
17_D	21_F	0.607	0.93
132_H	182_L	0.606	0.93
108_L	111_L	0.606	0.93
131_V	164_I	0.605	0.93
116_T	119_L	0.601	0.93
47_A	252_S	0.601	0.93
162_M	166_P	0.596	0.92
152_L	155_D	0.595	0.92
100_P	125_S	0.594	0.92
181_L	237_L	0.592	0.92
17_D	24_N	0.589	0.92
63_P	225_L	0.587	0.92
121_L	129_V	0.587	0.92
17_D	22_L	0.587	0.92
241_M	246_R	0.585	0.92
97_G	102_D	0.584	0.92
86_E	91_N	0.584	0.92
10_D	87_N	0.581	0.91
103_I	125_S	0.579	0.91
91_N	95_K	0.577	0.91
15_S	21_F	0.576	0.91
211_H	223_W	0.576	0.91
213_P	216_L	0.573	0.91
47_A	58_F	0.572	0.91
9_L	12_G	0.572	0.91
8_L	11_H	0.571	0.91
10_D	88_K	0.571	0.91
9_L	98_Y	0.569	0.91
152_L	159_L	0.568	0.90
230_E	237_L	0.568	0.90
114_D	253_H	0.567	0.90
136_L	160_R	0.566	0.90
218_F	239_K	0.564	0.90
213_P	254_D	0.562	0.90
188_P	227_N	0.560	0.90
43_S	211_H	0.559	0.90
60_T	117_G	0.558	0.90
57_L	93_L	0.555	0.89
197_T	203_Y	0.554	0.89
61_G	107_I	0.553	0.89
93_L	96_I	0.551	0.89
18_L	21_F	0.551	0.89
210_I	254_D	0.550	0.89
198_Q	202_N	0.550	0.89
48_V	102_D	0.547	0.89
101_E	128_D	0.547	0.89
64_D	88_K	0.546	0.89
156_L	213_P	0.543	0.88
222_G	225_L	0.541	0.88
44_V	86_E	0.537	0.88
113_L	117_G	0.534	0.88
219_E	232_Y	0.532	0.87
209_F	226_G	0.532	0.87
203_Y	248_N	0.530	0.87
151_Y	158_I	0.528	0.87
16_A	66_V	0.527	0.87
130_I	180_L	0.526	0.87
174_I	180_L	0.524	0.87
60_T	108_L	0.523	0.87
135_E	138_Y	0.522	0.86
206_T	209_F	0.521	0.86
251_I	254_D	0.520	0.86
153_L	160_R	0.520	0.86
34_P	246_R	0.520	0.86
183_I	207_G	0.517	0.86
44_V	62_I	0.517	0.86
215_E	231_Y	0.515	0.86
19_A	22_L	0.513	0.85
171_Y	237_L	0.511	0.85
8_L	250_I	0.509	0.85
152_L	157_E	0.508	0.85
56_I	175_L	0.506	0.85
200_D	240_S	0.504	0.84
105_F	125_S	0.504	0.84
135_E	190_S	0.503	0.84
172_L	176_P	0.501	0.84
223_W	228_A	0.500	0.84
42_V	212_V	0.500	0.84
18_L	40_V	0.500	0.84

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3aj3A	2	0.9294	100	0.349	Contact Map
3dhaA	1	0.9182	100	0.365	Contact Map
2r2dA	5	0.9814	100	0.368	Contact Map
4le6A	4	0.7918	100	0.386	Contact Map
4zo2A	2	0.9219	100	0.402	Contact Map
3eshA	5	0.9554	100	0.406	Contact Map
1p9eA	3	0.9257	100	0.415	Contact Map
2zo4A	1	0.8141	100	0.506	Contact Map
1ztcA	4	0.7323	100	0.524	Contact Map
2cfuA	2	0.8959	100	0.535	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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