Q97Y10 - SULSO - GREMLIN Contacts

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Q97Y10 - Uncharacterized protein

UniProt:	Q97Y10	Sequences: MKIGINGIKVGGYTDEKSKSGVTVILSEIENNTAGISQRGGSPATLGTDLLRPKHRGNQSVNAIVLTGRSVFGIRVVDAVLMKLFELGVGFKISQNLKIPIVVSASIFDFYDNTIMPTPDWGYNAMSNLGYDIPIGRYWAGRGATVGKLKGIKYAKPSGQGYYEIENNNLKIGVISVVNSIGNIYDEKGELLVGEETEEFKINTPGTTLGVVITNSKLNNSDACRVASSAENGFSSVIKPYNLSLDGDTVFTIATNEMEVPVDKVIALTYEASRESVLSIFK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	282 (265)
Sequences:	1748 (1142)
Seq/√Len:	70.2

SULSO - Q97Y10

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
107_I	177_V	4.687	1.00
75_R	78_D	4.042	1.00
135_I	279_S	3.944	1.00
2_K	173_G	3.348	1.00
27_S	253_I	3.092	1.00
210_G	273_S	3.083	1.00
85_F	116_M	2.879	1.00
86_E	123_Y	2.841	1.00
44_A	106_S	2.836	1.00
35_G	224_C	2.627	1.00
14_T	142_R	2.620	1.00
13_Y	121_W	2.589	1.00
227_A	252_T	2.511	1.00
171_K	215_N	2.461	1.00
12_G	138_Y	2.299	1.00
226_V	265_V	2.298	1.00
62_N	89_V	2.293	1.00
118_T	121_W	2.285	1.00
24_V	65_V	2.249	1.00
82_M	119_P	2.117	1.00
178_V	280_I	2.117	1.00
25_I	211_V	2.112	1.00
83_K	126_M	2.053	1.00
250_V	273_S	2.052	1.00
52_R	224_C	2.049	1.00
120_D	124_N	2.038	1.00
174_V	212_V	2.022	1.00
229_S	266_I	2.020	1.00
166_E	169_N	2.015	1.00
9_K	28_E	1.969	1.00
45_T	49_D	1.967	1.00
54_K	224_C	1.964	1.00
216_S	265_V	1.928	1.00
174_V	273_S	1.912	1.00
5_I	171_K	1.849	1.00
124_N	128_N	1.815	1.00
219_N	222_D	1.796	1.00
176_S	210_G	1.748	1.00
83_K	87_L	1.721	1.00
28_E	31_N	1.706	1.00
12_G	158_S	1.684	1.00
8_I	255_T	1.675	1.00
190_E	193_V	1.655	0.99
184_I	238_I	1.650	0.99
65_V	76_V	1.644	0.99
212_V	269_T	1.595	0.99
75_R	79_A	1.593	0.99
45_T	103_V	1.575	0.99
233_G	270_Y	1.571	0.99
176_S	273_S	1.571	0.99
210_G	250_V	1.567	0.99
92_K	95_Q	1.565	0.99
208_T	277_V	1.539	0.99
36_I	48_T	1.538	0.99
174_V	272_A	1.516	0.99
234_F	277_V	1.496	0.99
133_I	160_Q	1.493	0.99
218_L	226_V	1.490	0.99
65_V	80_V	1.487	0.99
65_V	122_G	1.471	0.99
124_N	127_S	1.466	0.99
217_K	259_E	1.465	0.99
232_N	242_N	1.462	0.99
105_A	251_F	1.457	0.99
146_V	180_S	1.425	0.98
218_L	265_V	1.425	0.98
67_T	106_S	1.416	0.98
158_S	175_I	1.411	0.98
18_S	115_I	1.382	0.98
82_M	123_Y	1.368	0.98
83_K	127_S	1.351	0.98
147_G	180_S	1.338	0.98
178_V	208_T	1.337	0.98
35_G	223_A	1.330	0.98
234_F	273_S	1.322	0.97
77_V	104_S	1.319	0.97
83_K	123_Y	1.316	0.97
14_T	138_Y	1.315	0.97
103_V	209_L	1.287	0.97
38_Q	49_D	1.282	0.97
75_R	119_P	1.281	0.97
30_E	257_E	1.269	0.97
123_Y	126_M	1.264	0.97
170_L	216_S	1.263	0.97
13_Y	124_N	1.260	0.97
232_N	235_S	1.260	0.97
71_V	81_L	1.254	0.96
10_V	213_I	1.245	0.96
162_Y	213_I	1.238	0.96
236_S	270_Y	1.238	0.96
140_A	177_V	1.237	0.96
146_V	178_V	1.231	0.96
225_R	228_S	1.226	0.96
72_F	98_K	1.223	0.96
19_K	142_R	1.211	0.96
24_V	126_M	1.209	0.96
223_A	254_A	1.204	0.96
49_D	52_R	1.197	0.95
231_E	242_N	1.194	0.95
68_G	112_D	1.174	0.95
28_E	32_N	1.168	0.95
8_I	27_S	1.168	0.95
8_I	213_I	1.165	0.95
87_L	126_M	1.164	0.95
10_V	175_I	1.159	0.94
6_N	171_K	1.146	0.94
39_R	231_E	1.145	0.94
24_V	80_V	1.141	0.94
212_V	230_A	1.132	0.94
56_R	244_S	1.131	0.94
158_S	161_G	1.128	0.94
14_T	121_W	1.123	0.94
48_T	100_P	1.105	0.93
5_I	213_I	1.099	0.93
105_A	177_V	1.094	0.93
78_D	119_P	1.087	0.92
244_S	263_D	1.085	0.92
223_A	252_T	1.085	0.92
185_Y	267_A	1.085	0.92
88_G	91_F	1.070	0.92
50_L	101_I	1.063	0.92
170_L	215_N	1.059	0.91
123_Y	127_S	1.057	0.91
73_G	77_V	1.053	0.91
61_V	253_I	1.052	0.91
35_G	220_N	1.044	0.91
158_S	177_V	1.035	0.90
39_R	242_N	1.023	0.90
26_L	126_M	1.021	0.90
83_K	86_E	1.018	0.90
66_L	209_L	1.014	0.89
12_G	133_I	1.010	0.89
172_I	265_V	1.008	0.89
189_G	193_V	1.004	0.89
135_I	160_Q	1.004	0.89
186_D	190_E	0.989	0.88
12_G	134_P	0.987	0.88
210_G	234_F	0.984	0.88
47_G	50_L	0.975	0.88
14_T	134_P	0.973	0.87
147_G	240_P	0.972	0.87
119_P	123_Y	0.968	0.87
191_L	194_G	0.967	0.87
60_S	101_I	0.964	0.87
26_L	83_K	0.962	0.87
215_N	258_M	0.958	0.87
170_L	217_K	0.955	0.86
181_I	245_L	0.954	0.86
58_N	101_I	0.941	0.86
34_A	61_V	0.935	0.85
226_V	269_T	0.935	0.85
189_G	194_G	0.932	0.85
82_M	115_I	0.930	0.85
37_S	228_S	0.930	0.85
8_I	253_I	0.928	0.85
135_I	275_E	0.925	0.85
56_R	245_L	0.923	0.85
213_I	253_I	0.922	0.84
91_F	95_Q	0.920	0.84
219_N	223_A	0.920	0.84
22_V	117_P	0.917	0.84
3_I	8_I	0.914	0.84
22_V	65_V	0.913	0.84
79_A	119_P	0.906	0.83
175_I	211_V	0.900	0.83
18_S	116_M	0.896	0.83
152_I	161_G	0.896	0.83
5_I	173_G	0.890	0.82
144_A	177_V	0.888	0.82
25_I	253_I	0.884	0.82
64_I	253_I	0.879	0.82
97_L	113_N	0.879	0.82
22_V	27_S	0.866	0.81
33_T	223_A	0.863	0.80
194_G	278_L	0.862	0.80
36_I	51_L	0.855	0.80
176_S	250_V	0.847	0.79
64_I	211_V	0.846	0.79
225_R	244_S	0.841	0.79
27_S	32_N	0.841	0.79
10_V	23_T	0.838	0.78
230_A	273_S	0.838	0.78
93_I	108_F	0.835	0.78
186_D	189_G	0.828	0.77
225_R	229_S	0.828	0.77
92_K	98_K	0.828	0.77
51_L	249_T	0.826	0.77
218_L	223_A	0.821	0.77
49_D	55_H	0.816	0.76
152_I	160_Q	0.814	0.76
230_A	233_G	0.813	0.76
93_I	99_I	0.809	0.76
45_T	105_A	0.807	0.76
77_V	100_P	0.806	0.76
232_N	270_Y	0.805	0.75
36_I	49_D	0.802	0.75
73_G	100_P	0.801	0.75
209_L	250_V	0.799	0.75
78_D	81_L	0.797	0.75
275_E	279_S	0.796	0.75
267_A	271_E	0.794	0.74
3_I	135_I	0.791	0.74
268_L	272_A	0.788	0.74
13_Y	79_A	0.781	0.73
230_A	250_V	0.778	0.73
59_Q	222_D	0.776	0.73
234_F	241_Y	0.775	0.73
79_A	126_M	0.773	0.72
82_M	86_E	0.771	0.72
201_K	204_T	0.771	0.72
27_S	213_I	0.771	0.72
194_G	274_R	0.769	0.72
146_V	280_I	0.768	0.72
78_D	82_M	0.766	0.72
137_R	142_R	0.761	0.71
176_S	208_T	0.761	0.71
55_H	228_S	0.753	0.70
87_L	127_S	0.751	0.70
211_V	253_I	0.751	0.70
145_T	148_K	0.748	0.70
262_V	266_I	0.744	0.70
85_F	113_N	0.744	0.70
33_T	219_N	0.744	0.70
37_S	231_E	0.738	0.69
37_S	250_V	0.736	0.69
224_C	228_S	0.735	0.69
235_S	241_Y	0.723	0.67
109_D	145_T	0.722	0.67
26_L	129_L	0.722	0.67
238_I	241_Y	0.722	0.67
233_G	237_V	0.719	0.67
48_T	73_G	0.717	0.67
226_V	266_I	0.713	0.66
187_E	194_G	0.713	0.66
174_V	269_T	0.712	0.66
182_G	185_Y	0.712	0.66
6_N	215_N	0.711	0.66
62_N	100_P	0.710	0.66
165_I	169_N	0.710	0.66
237_V	274_R	0.704	0.65
222_D	262_V	0.702	0.65
176_S	252_T	0.697	0.65
2_K	213_I	0.697	0.65
231_E	250_V	0.697	0.65
147_G	237_V	0.697	0.65
4_G	162_Y	0.695	0.64
25_I	175_I	0.694	0.64
162_Y	173_G	0.692	0.64
103_V	251_F	0.689	0.64
12_G	175_I	0.686	0.63
10_V	211_V	0.685	0.63
76_V	102_V	0.683	0.63
133_I	138_Y	0.682	0.63
71_V	99_I	0.679	0.63
273_S	276_S	0.679	0.63
32_N	253_I	0.678	0.62
86_E	126_M	0.674	0.62
65_V	104_S	0.672	0.62
132_D	173_G	0.672	0.62
84_L	98_K	0.671	0.62
152_I	162_Y	0.671	0.62
33_T	220_N	0.668	0.61
229_S	241_Y	0.665	0.61
131_Y	134_P	0.662	0.61
2_K	25_I	0.661	0.60
186_D	193_V	0.658	0.60
237_V	277_V	0.653	0.60
236_S	274_R	0.653	0.60
240_P	243_L	0.651	0.59
19_K	111_Y	0.646	0.59
4_G	10_V	0.646	0.59
172_I	272_A	0.645	0.59
212_V	273_S	0.645	0.59
266_I	270_Y	0.644	0.58
109_D	182_G	0.643	0.58
11_G	125_A	0.639	0.58
171_K	213_I	0.637	0.58
23_T	175_I	0.635	0.57
34_A	51_L	0.634	0.57
79_A	122_G	0.634	0.57
3_I	133_I	0.631	0.57
36_I	251_F	0.630	0.57
22_V	67_T	0.628	0.57
132_D	236_S	0.628	0.57
137_R	280_I	0.628	0.57
217_K	257_E	0.626	0.56
213_I	255_T	0.625	0.56
48_T	251_F	0.623	0.56
152_I	158_S	0.623	0.56
17_K	124_N	0.622	0.56
79_A	123_Y	0.619	0.55
168_N	264_K	0.619	0.55
204_T	243_L	0.617	0.55
10_V	162_Y	0.615	0.55
4_G	152_I	0.613	0.55
78_D	115_I	0.613	0.55
217_K	258_M	0.611	0.55
26_L	32_N	0.610	0.54
134_P	138_Y	0.609	0.54
174_V	230_A	0.607	0.54
241_Y	270_Y	0.606	0.54
72_F	85_F	0.603	0.54
226_V	262_V	0.603	0.54
108_F	265_V	0.596	0.53
32_N	60_S	0.595	0.53
46_L	106_S	0.593	0.52
43_P	47_G	0.592	0.52
90_G	95_Q	0.591	0.52
88_G	92_K	0.589	0.52
16_E	142_R	0.589	0.52
14_T	206_G	0.588	0.52
180_S	184_I	0.587	0.52
166_E	268_L	0.587	0.52
33_T	254_A	0.587	0.52
41_G	228_S	0.586	0.51
208_T	238_I	0.585	0.51
15_D	124_N	0.585	0.51
274_R	278_L	0.585	0.51
233_G	277_V	0.585	0.51
234_F	238_I	0.584	0.51
3_I	131_Y	0.584	0.51
80_V	100_P	0.584	0.51
68_G	71_V	0.582	0.51
234_F	250_V	0.581	0.51
166_E	171_K	0.581	0.51
56_R	101_I	0.578	0.51
180_S	238_I	0.577	0.50
70_S	113_N	0.571	0.50
107_I	144_A	0.571	0.50
41_G	225_R	0.570	0.50
165_I	168_N	0.569	0.49
201_K	205_P	0.568	0.49
225_R	266_I	0.567	0.49
55_H	58_N	0.567	0.49
68_G	111_Y	0.567	0.49
146_V	151_G	0.567	0.49
73_G	81_L	0.566	0.49
178_V	238_I	0.566	0.49
105_A	144_A	0.566	0.49
242_N	248_D	0.564	0.49
148_K	182_G	0.562	0.49
39_R	232_N	0.562	0.49
175_I	213_I	0.558	0.48
45_T	251_F	0.557	0.48
38_Q	52_R	0.557	0.48
24_V	125_A	0.552	0.47
233_G	273_S	0.552	0.47
47_G	51_L	0.551	0.47
163_Y	268_L	0.551	0.47
97_L	108_F	0.548	0.47
241_Y	267_A	0.548	0.47
47_G	55_H	0.546	0.47
70_S	81_L	0.545	0.47
131_Y	138_Y	0.544	0.46
41_G	106_S	0.544	0.46
2_K	12_G	0.543	0.46
272_A	275_E	0.542	0.46
6_N	167_N	0.542	0.46
48_T	77_V	0.539	0.46
170_L	258_M	0.538	0.46
182_G	240_P	0.537	0.46
53_P	99_I	0.537	0.46
163_Y	279_S	0.535	0.45
188_K	193_V	0.534	0.45
12_G	160_Q	0.534	0.45
148_K	183_N	0.534	0.45
137_R	149_L	0.533	0.45
149_L	183_N	0.532	0.45
9_K	130_G	0.532	0.45
42_S	97_L	0.531	0.45
30_E	128_N	0.531	0.45
111_Y	229_S	0.527	0.44
24_V	63_A	0.525	0.44
46_L	55_H	0.525	0.44
152_I	275_E	0.524	0.44
109_D	234_F	0.523	0.44
81_L	84_L	0.522	0.44
77_V	81_L	0.522	0.44
168_N	258_M	0.521	0.44
52_R	55_H	0.520	0.44
75_R	122_G	0.518	0.43
59_Q	219_N	0.518	0.43
107_I	140_A	0.517	0.43
187_E	190_E	0.516	0.43
148_K	161_G	0.514	0.43
104_S	223_A	0.513	0.43
46_L	50_L	0.512	0.43
35_G	54_K	0.511	0.42
176_S	280_I	0.510	0.42
89_V	92_K	0.507	0.42
47_G	251_F	0.507	0.42
94_S	97_L	0.506	0.42
15_D	18_S	0.502	0.41
73_G	147_G	0.502	0.41
42_S	99_I	0.502	0.41
150_K	158_S	0.502	0.41
135_I	162_Y	0.502	0.41
174_V	227_A	0.500	0.41

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4iheA	4	0.9752	100	0.112	Contact Map
3axgA	4	0.9362	100	0.135	Contact Map
3n2wA	4	0.9504	100	0.172	Contact Map
1b65A	4	0.9433	100	0.173	Contact Map
2drhA	4	0.9362	100	0.186	Contact Map
1vraB	2	0.2695	91.2	0.945	Contact Map
2v4iB	2	0.266	90.8	0.945	Contact Map
3it4B	2	0.2695	89.7	0.946	Contact Map
1vz6A	2	0.8369	88	0.948	Contact Map
1tdjA	2	0.8759	12.2	0.972	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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