Q97Y06 - SULSO - GREMLIN Contacts

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Q97Y06 - Partial transposase ISC1229

UniProt:	Q97Y06	Sequences: MLWKEKDVRGKKTDFYDAEKLENMVNKAREYVNNPLKELVSLYLFMKDVQTKQENRLRRALFLVSDEEKLSEERLEKFSKGDFSDVKLYQLEYTGTVLREIQVLARTLLQTREELKEVRKMIEGNVPQDHVLLTIPGIGKLAAGIIIGIVGDIKRFPRPESFVAYCGLDPVVERSGRIEVRKGISKRGNKYLRSLFYFLAETQYSRNPTLLKFYEAHKDKLKGRKLYTALARKLARIVWSVWYNNKPYEVK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	251 (237)
Sequences:	4001 (3004)
Seq/√Len:	195.2

SULSO - Q97Y06 Q97VB2 Q97UF7 Q97X29 Q97YE1 Q97X12 Q97UQ6 Q97WZ5 Q97X07 Q97Y59 Q97ZN4 Q97XK2 Q97WC0 Q97X26 Q97VS0 Q97Z62 Q97XR9 Q97XV5 Q97WY7 Q7LXX5 Q97XM7 Q97TX3 Q97UU8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
99_R	121_M	3.399	1.00
217_H	220_K	3.020	1.00
50_Q	112_R	2.930	1.00
103_V	114_E	2.835	1.00
150_V	162_F	2.596	1.00
162_F	235_A	2.579	1.00
166_C	192_L	2.558	1.00
134_T	247_P	2.436	1.00
157_P	161_S	2.401	1.00
106_R	114_E	2.389	1.00
49_V	52_K	2.217	1.00
211_L	215_E	2.205	1.00
131_V	247_P	2.204	1.00
49_V	56_R	2.150	1.00
158_R	161_S	2.145	1.00
110_Q	114_E	2.090	1.00
138_I	143_A	1.999	1.00
57_L	108_L	1.983	1.00
43_Y	119_R	1.983	1.00
146_I	238_V	1.954	1.00
49_V	107_T	1.951	1.00
222_K	225_K	1.908	1.00
184_I	228_T	1.900	1.00
47_K	115_L	1.882	1.00
50_Q	115_L	1.874	1.00
168_L	231_A	1.867	1.00
44_L	194_S	1.848	1.00
41_S	149_I	1.838	1.00
13_T	172_V	1.817	1.00
107_T	114_E	1.789	1.00
216_A	220_K	1.764	1.00
121_M	124_G	1.755	1.00
232_R	236_R	1.754	1.00
132_L	238_V	1.751	1.00
174_R	179_E	1.734	1.00
126_V	133_L	1.723	1.00
156_F	165_Y	1.721	1.00
23_N	27_K	1.685	1.00
105_A	109_L	1.682	1.00
241_V	247_P	1.673	1.00
51_T	55_N	1.664	1.00
142_A	195_L	1.638	1.00
135_I	238_V	1.636	1.00
135_I	241_V	1.624	1.00
198_F	201_E	1.623	1.00
194_S	198_F	1.613	1.00
240_S	244_N	1.599	1.00
107_T	110_Q	1.590	1.00
221_L	225_K	1.581	1.00
145_I	195_L	1.569	1.00
116_K	119_R	1.564	1.00
106_R	113_E	1.531	1.00
131_V	134_T	1.525	1.00
71_S	74_R	1.523	1.00
43_Y	47_K	1.522	1.00
46_M	115_L	1.520	1.00
239_W	243_Y	1.503	1.00
74_R	77_K	1.497	1.00
103_V	117_E	1.486	1.00
199_L	234_L	1.478	1.00
214_Y	230_L	1.476	1.00
78_F	82_D	1.425	1.00
166_C	235_A	1.421	1.00
47_K	50_Q	1.410	1.00
200_A	234_L	1.403	1.00
106_R	110_Q	1.392	1.00
163_V	232_R	1.391	1.00
200_A	231_A	1.390	1.00
57_L	101_I	1.389	1.00
132_L	143_A	1.362	1.00
75_L	78_F	1.358	1.00
82_D	85_D	1.343	1.00
210_L	237_I	1.330	1.00
50_Q	108_L	1.330	1.00
204_Y	214_Y	1.320	1.00
218_K	224_R	1.310	1.00
131_V	241_V	1.302	1.00
42_L	46_M	1.284	1.00
110_Q	113_E	1.270	1.00
133_L	140_K	1.269	1.00
213_F	233_K	1.269	1.00
218_K	223_G	1.268	1.00
81_G	85_D	1.257	1.00
175_S	179_E	1.256	1.00
197_Y	231_A	1.245	1.00
108_L	112_R	1.228	1.00
45_F	56_R	1.228	1.00
78_F	83_F	1.219	1.00
149_I	189_N	1.215	1.00
135_I	234_L	1.213	1.00
80_K	84_S	1.207	1.00
78_F	81_G	1.205	1.00
208_P	212_K	1.204	1.00
53_Q	57_L	1.200	1.00
210_L	230_L	1.197	1.00
213_F	217_H	1.192	1.00
48_D	52_K	1.172	1.00
126_V	129_D	1.152	1.00
123_E	140_K	1.148	1.00
215_E	219_D	1.145	1.00
153_I	242_W	1.144	1.00
142_A	199_L	1.137	1.00
240_S	243_Y	1.135	1.00
35_P	94_T	1.133	1.00
49_V	53_Q	1.132	1.00
197_Y	228_T	1.131	1.00
121_M	125_N	1.130	1.00
78_F	85_D	1.120	1.00
163_V	169_D	1.117	1.00
44_L	191_Y	1.112	1.00
217_H	226_L	1.112	1.00
40_V	191_Y	1.110	1.00
19_E	23_N	1.102	1.00
196_F	235_A	1.088	1.00
119_R	123_E	1.086	1.00
127_P	245_N	1.081	1.00
132_L	242_W	1.074	1.00
112_R	116_K	1.068	1.00
200_A	230_L	1.068	1.00
40_V	122_I	1.061	1.00
213_F	230_L	1.051	1.00
43_Y	115_L	1.046	1.00
224_R	227_Y	1.034	1.00
95_G	121_M	1.029	1.00
186_K	193_R	1.027	1.00
201_E	224_R	1.017	1.00
80_K	83_F	1.016	1.00
77_K	80_K	1.013	1.00
241_V	246_K	1.007	1.00
79_S	82_D	1.005	1.00
24_M	28_A	1.000	1.00
201_E	204_Y	0.998	1.00
208_P	211_L	0.990	1.00
146_I	192_L	0.984	0.99
217_H	222_K	0.982	0.99
237_I	241_V	0.981	0.99
213_F	229_A	0.980	0.99
76_E	80_K	0.979	0.99
103_V	121_M	0.976	0.99
50_Q	54_E	0.973	0.99
53_Q	107_T	0.967	0.99
44_L	48_D	0.966	0.99
98_L	102_Q	0.964	0.99
76_E	79_S	0.963	0.99
53_Q	104_L	0.957	0.99
217_H	221_L	0.953	0.99
54_E	108_L	0.950	0.99
39_L	118_V	0.942	0.99
216_A	219_D	0.933	0.99
37_K	149_I	0.921	0.99
161_S	164_A	0.919	0.99
138_I	238_V	0.914	0.99
43_Y	141_L	0.909	0.99
96_T	121_M	0.907	0.99
113_E	117_E	0.904	0.99
210_L	234_L	0.899	0.99
12_K	17_D	0.897	0.99
46_M	118_V	0.897	0.99
99_R	103_V	0.891	0.99
138_I	142_A	0.888	0.99
74_R	78_F	0.888	0.99
200_A	227_Y	0.885	0.99
14_D	175_S	0.883	0.99
135_I	138_I	0.878	0.99
99_R	102_Q	0.877	0.99
53_Q	108_L	0.868	0.99
79_S	85_D	0.867	0.99
40_V	144_G	0.867	0.99
52_K	55_N	0.863	0.99
109_L	113_E	0.854	0.99
74_R	85_D	0.851	0.99
74_R	81_G	0.850	0.98
47_K	51_T	0.846	0.98
158_R	239_W	0.843	0.98
70_L	74_R	0.838	0.98
184_I	193_R	0.838	0.98
222_K	226_L	0.837	0.98
150_V	153_I	0.837	0.98
164_A	169_D	0.836	0.98
66_D	71_S	0.833	0.98
138_I	234_L	0.817	0.98
79_S	83_F	0.811	0.98
213_F	216_A	0.809	0.98
126_V	144_G	0.808	0.98
40_V	145_I	0.806	0.98
11_K	172_V	0.804	0.98
30_E	33_N	0.797	0.98
114_E	117_E	0.797	0.98
46_M	114_E	0.796	0.98
169_D	185_S	0.794	0.98
77_K	81_G	0.793	0.98
201_E	227_Y	0.787	0.98
197_Y	201_E	0.786	0.98
8_V	11_K	0.778	0.97
128_Q	245_N	0.774	0.97
67_E	70_L	0.772	0.97
10_G	187_R	0.770	0.97
172_V	179_E	0.769	0.97
185_S	193_R	0.768	0.97
72_E	76_E	0.764	0.97
65_S	68_E	0.763	0.97
64_V	67_E	0.763	0.97
100_E	103_V	0.759	0.97
152_D	155_R	0.749	0.97
58_R	62_F	0.743	0.96
188_G	193_R	0.742	0.96
212_K	216_A	0.741	0.96
16_Y	20_K	0.736	0.96
21_L	24_M	0.736	0.96
73_E	77_K	0.735	0.96
169_D	193_R	0.733	0.96
131_V	245_N	0.729	0.96
196_F	231_A	0.724	0.96
47_K	119_R	0.716	0.96
215_E	218_K	0.715	0.96
111_T	115_L	0.712	0.96
212_K	215_E	0.712	0.96
117_E	121_M	0.711	0.96
73_E	83_F	0.710	0.95
77_K	82_D	0.708	0.95
218_K	226_L	0.707	0.95
171_V	185_S	0.707	0.95
169_D	172_V	0.706	0.95
50_Q	111_T	0.705	0.95
42_L	100_E	0.700	0.95
160_E	232_R	0.695	0.95
184_I	229_A	0.695	0.95
236_R	239_W	0.693	0.95
45_F	49_V	0.690	0.95
65_S	69_K	0.690	0.95
96_T	99_R	0.688	0.95
154_K	243_Y	0.688	0.95
196_F	238_V	0.688	0.95
138_I	146_I	0.687	0.95
85_D	91_L	0.684	0.94
75_L	82_D	0.684	0.94
41_S	189_N	0.681	0.94
65_S	70_L	0.677	0.94
68_E	71_S	0.670	0.94
67_E	71_S	0.669	0.94
149_I	191_Y	0.669	0.94
201_E	231_A	0.667	0.94
34_N	38_E	0.663	0.94
191_Y	194_S	0.661	0.93
41_S	191_Y	0.661	0.93
169_D	186_K	0.661	0.93
22_E	26_N	0.657	0.93
129_D	133_L	0.655	0.93
38_E	97_V	0.653	0.93
107_T	111_T	0.651	0.93
38_E	100_E	0.650	0.93
123_E	133_L	0.650	0.93
55_N	59_R	0.650	0.93
11_K	16_Y	0.647	0.93
35_P	95_G	0.646	0.93
39_L	121_M	0.644	0.93
99_R	110_Q	0.641	0.92
145_I	191_Y	0.638	0.92
115_L	119_R	0.637	0.92
217_H	229_A	0.637	0.92
42_L	118_V	0.637	0.92
78_F	84_S	0.636	0.92
204_Y	227_Y	0.636	0.92
53_Q	111_T	0.636	0.92
112_R	115_L	0.636	0.92
159_P	239_W	0.634	0.92
200_A	203_Q	0.634	0.92
225_K	229_A	0.630	0.92
145_I	149_I	0.629	0.92
104_L	107_T	0.621	0.91
66_D	70_L	0.621	0.91
71_S	81_G	0.620	0.91
75_L	85_D	0.619	0.91
74_R	82_D	0.616	0.91
70_L	79_S	0.614	0.91
119_R	122_I	0.613	0.91
168_L	196_F	0.613	0.91
53_Q	56_R	0.612	0.91
42_L	103_V	0.612	0.91
202_T	206_R	0.610	0.90
30_E	34_N	0.608	0.90
168_L	232_R	0.606	0.90
69_K	72_E	0.606	0.90
172_V	181_R	0.606	0.90
16_Y	21_L	0.604	0.90
233_K	236_R	0.601	0.90
9_R	169_D	0.597	0.89
103_V	107_T	0.596	0.89
73_E	82_D	0.594	0.89
71_S	85_D	0.593	0.89
102_Q	106_R	0.592	0.89
163_V	236_R	0.590	0.89
119_R	141_L	0.589	0.89
193_R	228_T	0.586	0.89
138_I	199_L	0.585	0.88
75_L	79_S	0.584	0.88
71_S	84_S	0.583	0.88
46_M	111_T	0.582	0.88
207_N	248_Y	0.580	0.88
9_R	19_E	0.576	0.88
126_V	143_A	0.573	0.87
153_I	239_W	0.570	0.87
29_R	34_N	0.567	0.87
23_N	26_N	0.567	0.87
81_G	84_S	0.564	0.87
42_L	45_F	0.563	0.87
204_Y	218_K	0.562	0.86
45_F	52_K	0.561	0.86
167_G	176_G	0.560	0.86
42_L	104_L	0.559	0.86
159_P	236_R	0.556	0.86
134_T	147_I	0.553	0.86
221_L	224_R	0.552	0.85
243_Y	246_K	0.551	0.85
203_Q	207_N	0.550	0.85
174_R	178_I	0.547	0.85
134_T	241_V	0.546	0.85
106_R	117_E	0.544	0.85
185_S	188_G	0.543	0.85
56_R	59_R	0.542	0.84
195_L	199_L	0.541	0.84
146_I	162_F	0.541	0.84
120_K	124_G	0.538	0.84
42_L	107_T	0.537	0.84
22_E	28_A	0.537	0.84
129_D	147_I	0.533	0.83
201_E	205_S	0.533	0.83
32_V	35_P	0.532	0.83
36_L	144_G	0.530	0.83
162_F	238_V	0.529	0.83
207_N	211_L	0.528	0.83
113_E	116_K	0.528	0.83
70_L	73_E	0.526	0.83
182_K	185_S	0.519	0.82
203_Q	210_L	0.519	0.82
68_E	74_R	0.518	0.82
128_Q	131_V	0.518	0.82
124_G	128_Q	0.518	0.82
70_L	82_D	0.517	0.82
137_G	202_T	0.517	0.82
213_F	220_K	0.515	0.81
45_F	48_D	0.513	0.81
69_K	74_R	0.512	0.81
36_L	125_N	0.511	0.81
45_F	107_T	0.510	0.81
239_W	244_N	0.510	0.81
75_L	81_G	0.509	0.81
38_E	60_A	0.507	0.80
168_L	193_R	0.506	0.80
203_Q	234_L	0.505	0.80
218_K	221_L	0.504	0.80
183_G	225_K	0.504	0.80
40_V	148_G	0.503	0.80
109_L	112_R	0.503	0.80
103_V	106_R	0.500	0.79
35_P	96_T	0.500	0.79

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1keaA	2	0.7888	92.2	0.912	Contact Map
3fhfA	1	0.7689	89	0.918	Contact Map
2abkA	1	0.7649	84.5	0.924	Contact Map
1pu6A	1	0.7689	81.2	0.927	Contact Map
3fhgA	2	0.8008	81.1	0.927	Contact Map
2a1jB	2	0.3068	80.5	0.927	Contact Map
4ofaA	1	0.5219	79.4	0.928	Contact Map
1kftA	1	0.2151	78.7	0.928	Contact Map
1z00A	1	0.3267	78.2	0.929	Contact Map
3n0uA	1	0.7849	77.4	0.929	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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