Q97Y04 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97Y04 - Uncharacterized protein

UniProt:	Q97Y04	Sequences: MSGMIGKIQDKKIFSITIIPSSWCNFRCVYCYENDHYKIKNMITTSEMTKRIKLFLENNIKTGFFRKVHIRWYGGEPLLDFKTIIDIMDFTNSIGKTYKTDIIGEIITNGYLLDIVKFKILLEKGVKIFQVTIDGYKDAHDKLRPLLNGKPTFDKIFENLIQTRNVTDNFFMFIRSNVMPDNLDSIKKFLDLASNYFSRDRRYYFTFFPVTRSGGDNDKNLKVIEPKKRMEIIQELYMYATQLGLNIPDKDTLLQIDGVPAMDDLCQALYPFSIIIRNDGKLFKCPLTVMIDDESVGHIEEDGSIVLDESKINRWAKYILSPLSRGCPRLHELGEVVGVEAE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	342 (286)
Sequences:	11890 (9055)
Seq/√Len:	535.4

ECOLI - ASLB YDEM MOAA
BACSU - ALBA SKFB MOAA YYDG
HALSA - Q9HQF5 MOAA Q9HQF7
SULSO - Q97Y04 Q97XZ2 Q97XS7 Q97XA7 Q7LXV3 Q97XS8 Q97XA6 MOAA Q97WC3 Q97WK5 Q980E0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
137_K	154_D	4.164	1.00
26_F	111_Y	3.979	1.00
50_K	90_F	3.511	1.00
161_I	196_Y	3.299	1.00
85_I	120_I	2.805	1.00
45_T	48_M	2.541	1.00
266_C	285_C	2.534	1.00
54_L	90_F	2.449	1.00
141_D	151_P	2.434	1.00
115_I	162_Q	2.398	1.00
48_M	300_E	2.375	1.00
25_N	109_N	2.323	1.00
139_A	185_S	2.318	1.00
51_R	55_F	2.315	1.00
54_L	94_I	2.256	1.00
162_Q	165_N	2.219	1.00
281_K	295_S	2.204	1.00
16_I	56_L	2.156	1.00
46_S	86_D	2.139	1.00
281_K	298_H	2.113	1.00
92_N	127_K	2.091	1.00
119_K	123_E	2.081	1.00
185_S	188_K	1.992	1.00
134_D	144_R	1.962	1.00
136_Y	139_A	1.931	1.00
136_Y	185_S	1.903	1.00
85_I	117_K	1.887	1.00
23_W	43_I	1.884	1.00
53_K	91_T	1.881	1.00
119_K	168_D	1.869	1.00
153_F	192_L	1.852	1.00
49_T	87_I	1.840	1.00
82_K	86_D	1.837	1.00
90_F	93_S	1.837	1.00
176_S	189_F	1.833	1.00
57_E	94_I	1.759	1.00
154_D	158_E	1.708	1.00
46_S	50_K	1.696	1.00
153_F	157_F	1.686	1.00
110_G	131_V	1.683	1.00
89_D	120_I	1.670	1.00
192_L	196_Y	1.659	1.00
25_N	112_L	1.657	1.00
277_R	281_K	1.649	1.00
191_D	195_N	1.649	1.00
303_G	306_V	1.641	1.00
68_V	102_I	1.633	1.00
174_I	193_A	1.620	1.00
120_I	123_E	1.618	1.00
117_K	120_I	1.607	1.00
72_W	91_T	1.605	1.00
158_E	161_I	1.596	1.00
114_D	158_E	1.592	1.00
46_S	82_K	1.590	1.00
180_P	228_K	1.587	1.00
30_Y	134_D	1.582	1.00
187_K	235_E	1.579	1.00
86_D	89_D	1.572	1.00
161_I	165_N	1.566	1.00
277_R	283_F	1.565	1.00
155_K	158_E	1.564	1.00
161_I	164_R	1.556	1.00
302_D	306_V	1.554	1.00
135_G	139_A	1.549	1.00
120_I	124_K	1.543	1.00
48_M	51_R	1.535	1.00
70_I	91_T	1.516	1.00
78_L	106_I	1.515	1.00
137_K	151_P	1.512	1.00
14_F	68_V	1.504	1.00
142_K	181_D	1.493	1.00
29_V	142_K	1.489	1.00
298_H	301_E	1.486	1.00
50_K	86_D	1.471	1.00
50_K	54_L	1.463	1.00
114_D	117_K	1.448	1.00
89_D	93_S	1.448	1.00
225_E	228_K	1.433	1.00
137_K	141_D	1.429	1.00
122_L	168_D	1.426	1.00
131_V	160_L	1.413	1.00
90_F	94_I	1.404	1.00
115_I	165_N	1.396	1.00
92_N	124_K	1.394	1.00
92_N	104_G	1.392	1.00
118_F	162_Q	1.378	1.00
131_V	159_N	1.355	1.00
188_K	191_D	1.346	1.00
311_K	315_W	1.334	1.00
20_P	72_W	1.321	1.00
162_Q	168_D	1.301	1.00
57_E	101_D	1.295	1.00
137_K	153_F	1.295	1.00
80_D	87_I	1.283	1.00
164_R	197_F	1.271	1.00
89_D	124_K	1.258	1.00
156_I	159_N	1.257	1.00
191_D	236_L	1.256	1.00
55_F	303_G	1.252	1.00
118_F	159_N	1.249	1.00
43_I	80_D	1.249	1.00
18_I	49_T	1.249	1.00
107_I	130_Q	1.226	1.00
78_L	112_L	1.218	1.00
88_M	126_V	1.213	1.00
231_E	235_E	1.211	1.00
157_F	161_I	1.210	1.00
136_Y	188_K	1.208	1.00
140_H	156_I	1.199	1.00
158_E	162_Q	1.198	1.00
140_H	152_T	1.196	1.00
230_M	234_Q	1.187	1.00
141_D	152_T	1.179	1.00
129_F	163_T	1.175	1.00
139_A	184_D	1.173	1.00
191_D	239_Y	1.172	1.00
313_N	317_K	1.161	1.00
157_F	192_L	1.159	1.00
91_T	104_G	1.146	1.00
305_I	309_E	1.145	1.00
164_R	196_Y	1.141	1.00
72_W	88_M	1.134	1.00
46_S	90_F	1.116	1.00
103_I	128_I	1.114	1.00
44_T	48_M	1.110	1.00
86_D	90_F	1.104	1.00
88_M	124_K	1.098	1.00
72_W	104_G	1.093	1.00
139_A	142_K	1.092	1.00
20_P	84_I	1.088	1.00
231_E	234_Q	1.075	1.00
176_S	201_R	1.069	1.00
18_I	276_I	1.043	1.00
164_R	198_S	1.038	1.00
143_L	179_M	1.032	1.00
227_K	231_E	1.025	1.00
78_L	84_I	1.023	1.00
164_R	172_M	1.023	1.00
84_I	88_M	1.016	1.00
282_L	307_L	1.010	1.00
118_F	122_L	1.007	1.00
22_S	278_N	1.004	1.00
191_D	194_S	1.002	1.00
304_S	308_D	1.001	1.00
42_M	279_D	1.000	1.00
187_K	191_D	0.999	1.00
69_H	103_I	0.998	1.00
138_D	142_K	0.996	1.00
21_S	43_I	0.996	1.00
159_N	162_Q	0.996	1.00
157_F	196_Y	0.996	1.00
228_K	231_E	0.993	1.00
53_K	94_I	0.992	1.00
25_N	76_E	0.991	1.00
235_E	238_M	0.988	1.00
152_T	155_K	0.988	1.00
69_H	105_E	0.984	1.00
117_K	121_L	0.975	1.00
50_K	94_I	0.975	1.00
135_G	153_F	0.963	1.00
85_I	89_D	0.961	1.00
52_I	276_I	0.959	1.00
236_L	240_A	0.959	1.00
295_S	298_H	0.958	1.00
115_I	168_D	0.950	1.00
311_K	314_R	0.944	1.00
193_A	198_S	0.941	1.00
51_R	300_E	0.938	1.00
16_I	276_I	0.934	1.00
189_F	193_A	0.934	1.00
174_I	198_S	0.931	1.00
325_R	328_P	0.927	1.00
233_I	236_L	0.926	1.00
14_F	272_F	0.922	1.00
249_D	252_T	0.919	1.00
235_E	239_Y	0.918	1.00
30_Y	143_L	0.917	1.00
44_T	49_T	0.915	1.00
234_Q	238_M	0.910	1.00
78_L	117_K	0.909	1.00
114_D	162_Q	0.908	1.00
50_K	93_S	0.908	1.00
300_E	303_G	0.907	1.00
113_L	118_F	0.905	1.00
25_N	111_Y	0.900	1.00
84_I	106_I	0.899	1.00
165_N	168_D	0.899	1.00
302_D	307_L	0.888	1.00
103_I	127_K	0.888	1.00
239_Y	242_Q	0.887	1.00
163_T	172_M	0.885	1.00
85_I	123_E	0.878	1.00
283_F	295_S	0.877	1.00
20_P	80_D	0.874	1.00
26_F	152_T	0.872	1.00
160_L	172_M	0.871	1.00
160_L	174_I	0.869	1.00
87_I	91_T	0.869	1.00
131_V	163_T	0.867	1.00
56_L	70_I	0.866	1.00
178_V	186_I	0.866	1.00
20_P	87_I	0.858	1.00
245_L	249_D	0.851	1.00
51_R	54_L	0.849	1.00
130_Q	175_R	0.847	1.00
109_N	112_L	0.842	1.00
155_K	159_N	0.840	1.00
53_K	70_I	0.836	1.00
315_W	318_Y	0.827	1.00
54_L	58_N	0.827	1.00
310_S	313_N	0.822	1.00
119_K	122_L	0.819	1.00
119_K	162_Q	0.817	1.00
297_G	307_L	0.815	1.00
85_I	124_K	0.814	1.00
113_L	159_N	0.811	1.00
187_K	239_Y	0.811	1.00
314_R	318_Y	0.804	1.00
46_S	87_I	0.798	1.00
106_I	121_L	0.794	1.00
29_V	143_L	0.793	1.00
133_I	174_I	0.792	1.00
154_D	157_F	0.789	1.00
159_N	163_T	0.779	1.00
192_L	195_N	0.777	1.00
193_A	196_Y	0.776	1.00
76_E	109_N	0.775	1.00
250_K	253_L	0.772	1.00
207_F	213_S	0.772	1.00
106_I	129_F	0.772	1.00
18_I	53_K	0.771	1.00
46_S	80_D	0.770	1.00
19_I	278_N	0.768	1.00
122_L	169_N	0.766	1.00
312_I	315_W	0.765	1.00
18_I	52_I	0.762	1.00
88_M	104_G	0.761	1.00
16_I	274_I	0.759	1.00
19_I	73_Y	0.759	1.00
49_T	80_D	0.758	1.00
226_P	230_M	0.758	1.00
57_E	102_I	0.755	1.00
104_G	126_V	0.753	1.00
55_F	58_N	0.752	1.00
56_L	67_K	0.750	1.00
308_D	317_K	0.749	1.00
118_F	168_D	0.748	1.00
21_S	80_D	0.748	1.00
149_G	152_T	0.748	1.00
113_L	131_V	0.743	1.00
193_A	201_R	0.742	1.00
78_L	159_N	0.741	1.00
312_I	316_A	0.740	1.00
171_F	199_R	0.740	1.00
32_Y	73_Y	0.738	1.00
106_I	126_V	0.736	1.00
190_L	194_S	0.735	1.00
132_T	177_N	0.734	1.00
55_F	305_I	0.731	1.00
88_M	120_I	0.731	1.00
274_I	308_D	0.730	1.00
19_I	275_I	0.730	1.00
76_E	79_L	0.729	1.00
274_I	304_S	0.727	1.00
141_D	150_K	0.724	1.00
233_I	237_Y	0.723	1.00
244_G	253_L	0.721	1.00
82_K	87_I	0.721	1.00
160_L	198_S	0.720	1.00
44_T	52_I	0.720	1.00
108_T	131_V	0.720	1.00
163_T	170_F	0.718	1.00
113_L	121_L	0.718	1.00
85_I	88_M	0.715	1.00
52_I	56_L	0.713	1.00
141_D	153_F	0.709	1.00
30_Y	144_R	0.708	1.00
128_I	171_F	0.706	1.00
128_I	173_F	0.704	1.00
135_G	185_S	0.702	1.00
140_H	144_R	0.700	1.00
174_I	201_R	0.698	1.00
72_W	87_I	0.695	1.00
205_F	209_P	0.694	1.00
135_G	140_H	0.693	1.00
325_R	329_R	0.691	1.00
47_E	50_K	0.690	1.00
89_D	123_E	0.688	1.00
229_R	233_I	0.686	1.00
71_R	105_E	0.683	1.00
73_Y	107_I	0.682	1.00
229_R	232_I	0.681	1.00
238_M	242_Q	0.680	1.00
236_L	239_Y	0.679	1.00
140_H	153_F	0.679	1.00
310_S	315_W	0.679	1.00
136_Y	184_D	0.679	1.00
133_I	153_F	0.674	1.00
17_T	273_S	0.674	1.00
49_T	53_K	0.672	1.00
71_R	107_I	0.665	1.00
129_F	170_F	0.664	1.00
164_R	199_R	0.662	1.00
92_N	125_G	0.656	1.00
237_Y	241_T	0.655	1.00
115_I	119_K	0.653	1.00
187_K	190_L	0.653	1.00
238_M	241_T	0.653	1.00
226_P	259_V	0.652	1.00
91_T	102_I	0.651	1.00
199_R	253_L	0.650	1.00
245_L	250_K	0.648	1.00
185_S	189_F	0.645	1.00
229_R	236_L	0.641	1.00
230_M	233_I	0.641	1.00
81_F	117_K	0.641	1.00
107_I	286_P	0.639	1.00
81_F	85_I	0.639	1.00
220_N	223_V	0.637	1.00
78_L	121_L	0.636	1.00
141_D	144_R	0.635	1.00
122_L	127_K	0.634	1.00
101_D	104_G	0.634	1.00
114_D	159_N	0.633	1.00
130_Q	173_F	0.631	1.00
33_E	73_Y	0.630	1.00
133_I	156_I	0.628	1.00
245_L	248_P	0.622	1.00
113_L	163_T	0.620	1.00
249_D	253_L	0.617	1.00
189_F	201_R	0.616	1.00
17_T	286_P	0.614	1.00
80_D	84_I	0.613	1.00
105_E	128_I	0.613	1.00
26_F	140_H	0.612	1.00
182_N	185_S	0.611	1.00
247_I	250_K	0.610	1.00
122_L	170_F	0.608	1.00
118_F	129_F	0.607	1.00
54_L	57_E	0.603	1.00
296_V	313_N	0.603	1.00
80_D	86_D	0.601	1.00
176_S	193_A	0.599	1.00
73_Y	286_P	0.598	1.00
27_R	149_G	0.598	1.00
118_F	163_T	0.597	1.00
49_T	52_I	0.592	1.00
111_Y	155_K	0.589	0.99
276_I	282_L	0.589	0.99
107_I	175_R	0.588	0.99
70_I	104_G	0.583	0.99
209_P	212_R	0.581	0.99
133_I	157_F	0.580	0.99
25_N	79_L	0.580	0.99
140_H	151_P	0.580	0.99
183_L	228_K	0.579	0.99
94_I	101_D	0.579	0.99
297_G	302_D	0.577	0.99
237_Y	240_A	0.576	0.99
24_C	28_C	0.575	0.99
326_G	329_R	0.574	0.99
55_F	304_S	0.574	0.99
23_W	41_N	0.573	0.99
172_M	198_S	0.573	0.99
264_D	268_A	0.570	0.99
112_L	115_I	0.570	0.99
310_S	314_R	0.569	0.99
303_G	307_L	0.567	0.99
246_N	249_D	0.565	0.99
227_K	230_M	0.564	0.99
186_I	189_F	0.562	0.99
92_N	101_D	0.561	0.99
302_D	310_S	0.559	0.99
275_I	286_P	0.559	0.99
28_C	31_C	0.558	0.99
263_D	266_C	0.557	0.99
190_L	201_R	0.555	0.99
16_I	67_K	0.552	0.99
114_D	155_K	0.552	0.99
58_N	305_I	0.551	0.99
94_I	102_I	0.549	0.99
248_P	252_T	0.548	0.99
13_I	308_D	0.546	0.99
137_K	150_K	0.546	0.99
48_M	52_I	0.545	0.99
189_F	192_L	0.543	0.99
17_T	73_Y	0.542	0.99
34_N	149_G	0.541	0.99
135_G	144_R	0.541	0.99
70_I	102_I	0.538	0.99
141_D	149_G	0.537	0.99
15_S	69_H	0.537	0.99
79_L	112_L	0.536	0.99
27_R	34_N	0.535	0.99
47_E	90_F	0.535	0.99
311_K	317_K	0.535	0.99
53_K	72_W	0.535	0.99
131_V	156_I	0.534	0.99
53_K	57_E	0.534	0.99
47_E	51_R	0.534	0.99
151_P	154_D	0.534	0.99
24_C	31_C	0.533	0.99
208_F	211_T	0.533	0.99
176_S	203_Y	0.530	0.99
111_Y	159_N	0.527	0.99
264_D	267_Q	0.526	0.99
78_L	113_L	0.525	0.99
234_Q	237_Y	0.523	0.99
46_S	49_T	0.522	0.99
180_P	183_L	0.521	0.99
280_G	298_H	0.519	0.99
52_I	55_F	0.519	0.99
250_K	254_L	0.517	0.99
282_L	304_S	0.516	0.99
283_F	289_V	0.516	0.99
246_N	251_D	0.516	0.99
67_K	101_D	0.515	0.99
297_G	301_E	0.515	0.99
17_T	275_I	0.513	0.99
297_G	300_E	0.512	0.99
240_A	246_N	0.510	0.99
144_R	151_P	0.510	0.99
76_E	108_T	0.510	0.99
222_K	226_P	0.509	0.99
232_I	235_E	0.509	0.99
138_D	141_D	0.506	0.98
205_F	210_V	0.503	0.98
158_E	165_N	0.503	0.98
186_I	232_I	0.500	0.98

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4k36A	1	0.9327	100	0.274	Contact Map
4m7tA	1	0.693	100	0.458	Contact Map
1tv8A	2	0.8684	100	0.46	Contact Map
4rtbA	2	0.8655	100	0.547	Contact Map
3c8fA	1	0.6637	100	0.594	Contact Map
4wcxA	1	0.9064	100	0.594	Contact Map
2yx0A	1	0.7485	99.9	0.619	Contact Map
2qgqA	1	0.7281	99.9	0.635	Contact Map
2a5hA	4	0.807	99.9	0.636	Contact Map
2z2uA	1	0.6491	99.9	0.641	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0102 seconds.