Q97XZ7 - SULSO - GREMLIN Contacts

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Q97XZ7 - Oxidoreductase

UniProt:	Q97XZ7	Sequences: MKVGFIGLGIMGFPMASNLLKAGYDLTVYNRTIEKAEKLGKMGAKVAHSPKEVAEVSEIVISMVTDAPDVEEVLFGENGVVKSNKRGLIFVDMSTNSPEFAKKVTKRLSEYGMEFLDAPVTGGDKGAREGTLTIMVGGKEDVFKRVEPIFKAMGKNIIHVGDVGSGQALKLCNQVVVALNMVSVVEGLLLARSLGIDDDKLFSVLSTGAANSFTVQYYLPKIMKGDLNPGFKAAHLKKDLKYAMEIANSKSLPLLGTSLALQLYNAMVSLGIGELGTQGLVKVYEKLVK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	289 (277)
Sequences:	11451 (7339)
Seq/√Len:	440.9

ECOLI - GARR YGBJ GLXR SQUU 6PGD
BACSU - YKWC YFJR YQEC 6PGD 6PGDH
HALSA - Q9HMG5
SULSO - Q97XZ7 Q97ZE5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
147_E	151_K	3.640	1.00
71_E	103_K	3.380	1.00
140_E	144_K	3.269	1.00
27_T	47_A	3.094	1.00
40_G	46_V	2.876	1.00
114_E	142_V	2.866	1.00
114_E	145_R	2.701	1.00
17_S	42_M	2.687	1.00
75_F	107_R	2.567	1.00
234_A	274_E	2.276	1.00
48_H	52_E	2.252	1.00
37_E	41_K	2.214	1.00
4_G	53_V	2.193	1.00
144_K	147_E	2.185	1.00
36_A	46_V	2.185	1.00
108_L	113_M	2.139	1.00
89_I	146_V	2.067	1.00
20_L	44_A	2.057	1.00
211_N	216_Q	1.969	1.00
49_S	52_E	1.961	1.00
13_F	38_K	1.932	1.00
197_D	200_K	1.922	1.00
24_Y	152_A	1.920	1.00
140_E	159_H	1.891	1.00
81_V	108_L	1.884	1.00
105_T	163_V	1.833	1.00
114_E	139_K	1.820	1.00
99_E	249_S	1.815	1.00
62_S	90_F	1.813	1.00
246_I	249_S	1.800	1.00
25_D	45_K	1.783	1.00
18_N	21_K	1.761	1.00
34_E	37_E	1.746	1.00
22_A	152_A	1.745	1.00
85_K	88_L	1.723	1.00
32_T	35_K	1.702	1.00
234_A	268_V	1.686	1.00
191_A	201_L	1.677	1.00
106_K	110_E	1.669	1.00
109_S	139_K	1.666	1.00
74_L	90_F	1.638	1.00
139_K	142_V	1.628	1.00
134_I	153_M	1.627	1.00
33_I	37_E	1.619	1.00
107_R	110_E	1.594	1.00
63_M	93_M	1.592	1.00
28_V	44_A	1.585	1.00
116_L	138_G	1.576	1.00
89_I	142_V	1.575	1.00
84_N	88_L	1.571	1.00
134_I	154_G	1.543	1.00
143_F	147_E	1.509	1.00
105_T	109_S	1.500	1.00
272_I	275_L	1.499	1.00
118_A	134_I	1.498	1.00
103_K	107_R	1.479	1.00
116_L	146_V	1.476	1.00
53_V	57_S	1.476	1.00
199_D	203_S	1.463	1.00
18_N	130_G	1.451	1.00
61_I	93_M	1.441	1.00
27_T	45_K	1.440	1.00
75_F	79_G	1.430	1.00
143_F	159_H	1.426	1.00
66_D	69_D	1.414	1.00
37_E	40_G	1.395	1.00
51_K	55_E	1.384	1.00
124_D	128_R	1.373	1.00
27_T	56_V	1.371	1.00
51_K	83_S	1.367	1.00
125_K	129_E	1.366	1.00
179_L	183_S	1.365	1.00
171_L	242_Y	1.364	1.00
160_V	169_L	1.363	1.00
67_A	100_F	1.362	1.00
220_P	224_K	1.351	1.00
261_L	265_N	1.339	1.00
233_A	267_M	1.328	1.00
33_I	48_H	1.328	1.00
258_S	262_Q	1.312	1.00
101_A	115_F	1.298	1.00
89_I	145_R	1.298	1.00
58_E	85_K	1.293	1.00
275_L	282_K	1.288	1.00
21_K	42_M	1.287	1.00
192_R	198_D	1.284	1.00
206_S	216_Q	1.278	1.00
131_T	155_K	1.276	1.00
79_G	82_K	1.269	1.00
234_A	273_G	1.266	1.00
50_P	83_S	1.264	1.00
116_L	143_F	1.263	1.00
91_V	146_V	1.254	1.00
259_L	262_Q	1.241	1.00
63_M	120_V	1.238	1.00
108_L	115_F	1.238	1.00
237_K	268_V	1.231	1.00
14_P	128_R	1.230	1.00
56_V	85_K	1.230	1.00
17_S	128_R	1.227	1.00
21_K	128_R	1.224	1.00
4_G	57_S	1.217	1.00
68_P	72_E	1.198	1.00
248_N	258_S	1.197	1.00
71_E	75_F	1.196	1.00
59_I	89_I	1.196	1.00
39_L	44_A	1.187	1.00
88_L	113_M	1.178	1.00
245_E	249_S	1.173	1.00
146_V	150_F	1.167	1.00
81_V	111_Y	1.166	1.00
139_K	162_D	1.165	1.00
54_A	83_S	1.163	1.00
5_F	15_M	1.162	1.00
247_A	254_L	1.162	1.00
189_L	193_S	1.158	1.00
102_K	168_A	1.157	1.00
82_K	111_Y	1.156	1.00
16_A	26_L	1.154	1.00
93_M	134_I	1.151	1.00
194_L	250_K	1.151	1.00
178_A	236_L	1.141	1.00
59_I	149_I	1.138	1.00
178_A	240_L	1.135	1.00
71_E	107_R	1.121	1.00
5_F	16_A	1.116	1.00
5_F	61_I	1.116	1.00
97_S	100_F	1.115	1.00
38_K	41_K	1.111	1.00
84_N	113_M	1.101	1.00
253_P	258_S	1.096	1.00
17_S	21_K	1.090	1.00
262_Q	265_N	1.089	1.00
64_V	73_V	1.082	1.00
90_F	108_L	1.074	1.00
27_T	57_S	1.074	1.00
20_L	43_G	1.071	1.00
10_I	124_D	1.054	1.00
102_K	106_K	1.052	1.00
162_D	165_S	1.052	1.00
244_M	258_S	1.046	1.00
93_M	153_M	1.046	1.00
67_A	97_S	1.042	1.00
102_K	163_V	1.041	1.00
237_K	265_N	1.035	1.00
105_T	139_K	1.031	1.00
71_E	100_F	1.028	1.00
136_V	143_F	1.020	1.00
30_N	35_K	1.019	1.00
159_H	162_D	1.019	1.00
61_I	149_I	1.016	1.00
241_K	261_L	1.014	1.00
107_R	111_Y	1.011	1.00
51_K	79_G	1.006	1.00
106_K	109_S	1.006	1.00
176_V	187_G	0.996	1.00
245_E	248_N	0.991	1.00
231_F	235_H	0.989	1.00
47_A	52_E	0.985	1.00
61_I	91_V	0.977	1.00
38_K	42_M	0.977	1.00
74_L	80_V	0.971	1.00
84_N	90_F	0.971	1.00
117_D	164_G	0.969	1.00
116_L	136_V	0.966	1.00
200_K	203_S	0.964	1.00
213_F	217_Y	0.959	1.00
33_I	46_V	0.944	1.00
172_C	191_A	0.944	1.00
233_A	268_V	0.941	1.00
188_L	202_F	0.937	1.00
47_A	53_V	0.933	1.00
74_L	108_L	0.933	1.00
127_A	132_L	0.929	1.00
206_S	215_V	0.927	1.00
160_V	165_S	0.927	1.00
172_C	187_G	0.925	1.00
69_D	72_E	0.923	1.00
151_K	157_I	0.921	1.00
86_R	112_G	0.920	1.00
121_T	173_N	0.919	1.00
138_G	143_F	0.917	1.00
144_K	159_H	0.913	1.00
135_M	204_V	0.910	1.00
70_V	96_N	0.909	1.00
265_N	269_S	0.898	1.00
31_R	69_D	0.896	1.00
18_N	153_M	0.896	1.00
179_L	256_G	0.895	1.00
202_F	219_L	0.894	1.00
241_K	245_E	0.893	1.00
230_G	233_A	0.892	1.00
75_F	104_V	0.887	1.00
34_E	38_K	0.887	1.00
8_L	39_L	0.884	1.00
101_A	167_Q	0.883	1.00
121_T	135_M	0.881	1.00
100_F	103_K	0.879	1.00
193_S	252_L	0.873	1.00
13_F	17_S	0.873	1.00
71_E	104_V	0.873	1.00
52_E	55_E	0.870	1.00
168_A	194_L	0.869	1.00
97_S	245_E	0.862	1.00
241_K	265_N	0.861	1.00
5_F	26_L	0.859	1.00
237_K	261_L	0.858	1.00
15_M	153_M	0.841	1.00
89_I	114_E	0.841	1.00
103_K	106_K	0.839	1.00
96_N	100_F	0.839	1.00
168_A	246_I	0.838	1.00
117_D	166_G	0.838	1.00
91_V	118_A	0.835	1.00
148_P	151_K	0.835	1.00
35_K	38_K	0.833	1.00
169_L	196_I	0.829	1.00
228_N	275_L	0.827	1.00
19_L	61_I	0.825	1.00
268_V	273_G	0.825	1.00
59_I	145_R	0.824	1.00
160_V	204_V	0.823	1.00
275_L	279_G	0.823	1.00
8_L	28_V	0.813	1.00
182_V	256_G	0.812	1.00
142_V	145_R	0.810	1.00
232_K	235_H	0.804	1.00
62_S	70_V	0.800	1.00
3_V	24_Y	0.799	1.00
180_N	212_S	0.793	1.00
27_T	53_V	0.792	1.00
60_V	80_V	0.790	1.00
256_G	260_A	0.790	1.00
102_K	164_G	0.787	1.00
185_V	280_L	0.786	1.00
140_E	162_D	0.778	1.00
199_D	224_K	0.777	1.00
266_A	269_S	0.777	1.00
142_V	146_V	0.776	1.00
95_T	242_Y	0.775	1.00
137_G	166_G	0.773	1.00
219_L	222_I	0.771	1.00
206_S	211_N	0.770	1.00
267_M	279_G	0.769	1.00
65_T	69_D	0.768	1.00
99_E	102_K	0.766	1.00
31_R	35_K	0.765	1.00
175_V	257_T	0.763	1.00
180_N	184_V	0.761	1.00
193_S	250_K	0.757	1.00
246_I	250_K	0.752	1.00
191_A	196_I	0.752	1.00
114_E	141_D	0.749	1.00
59_I	91_V	0.748	1.00
15_M	132_L	0.748	1.00
272_I	282_K	0.747	1.00
20_L	42_M	0.745	1.00
116_L	142_V	0.744	1.00
28_V	36_A	0.742	1.00
202_F	206_S	0.739	1.00
15_M	93_M	0.739	1.00
176_V	184_V	0.737	1.00
92_D	115_F	0.735	1.00
262_Q	266_A	0.731	1.00
13_F	42_M	0.731	1.00
175_V	243_A	0.729	1.00
147_E	157_I	0.729	1.00
75_F	81_V	0.725	1.00
80_V	84_N	0.725	1.00
266_A	270_L	0.723	1.00
64_V	69_D	0.723	1.00
123_G	126_G	0.722	1.00
6_I	50_P	0.719	1.00
232_K	274_E	0.715	1.00
143_F	157_I	0.713	1.00
233_A	279_G	0.711	1.00
62_S	74_L	0.711	1.00
19_L	26_L	0.710	1.00
5_F	63_M	0.709	1.00
24_Y	149_I	0.709	1.00
150_F	157_I	0.709	1.00
81_V	113_M	0.708	1.00
244_M	261_L	0.706	1.00
52_E	56_V	0.706	1.00
15_M	63_M	0.706	1.00
3_V	149_I	0.702	1.00
227_L	282_K	0.702	1.00
219_L	223_M	0.697	1.00
199_D	223_M	0.695	1.00
184_V	215_V	0.694	1.00
104_V	115_F	0.689	1.00
6_I	29_Y	0.687	1.00
156_N	207_T	0.684	1.00
70_V	94_S	0.677	1.00
189_L	192_R	0.677	1.00
20_L	26_L	0.672	1.00
118_A	136_V	0.669	1.00
169_L	201_L	0.667	1.00
248_N	261_L	0.666	1.00
3_V	19_L	0.665	1.00
158_I	204_V	0.664	1.00
81_V	107_R	0.664	1.00
279_G	282_K	0.662	1.00
36_A	40_G	0.660	1.00
115_F	163_V	0.657	1.00
53_V	56_V	0.656	1.00
33_I	36_A	0.655	1.00
176_V	183_S	0.653	1.00
141_D	144_K	0.653	1.00
176_V	180_N	0.649	0.99
100_F	104_V	0.648	0.99
190_L	254_L	0.647	0.99
50_P	54_A	0.647	0.99
196_I	201_L	0.646	0.99
85_K	113_M	0.640	0.99
60_V	84_N	0.636	0.99
179_L	260_A	0.633	0.99
30_N	33_I	0.631	0.99
171_L	243_A	0.629	0.99
136_V	150_F	0.626	0.99
51_K	82_K	0.626	0.99
70_V	92_D	0.626	0.99
137_G	159_H	0.625	0.99
64_V	70_V	0.625	0.99
180_N	214_T	0.625	0.99
72_E	79_G	0.622	0.99
57_S	60_V	0.621	0.99
97_S	242_Y	0.620	0.99
168_A	196_I	0.619	0.99
68_P	71_E	0.618	0.99
237_K	241_K	0.617	0.99
221_K	226_D	0.617	0.99
172_C	190_L	0.616	0.99
86_R	111_Y	0.614	0.99
181_M	277_T	0.613	0.99
75_F	82_K	0.611	0.99
126_G	131_T	0.610	0.99
118_A	150_F	0.610	0.99
202_F	205_L	0.610	0.99
13_F	39_L	0.606	0.99
96_N	101_A	0.605	0.99
70_V	100_F	0.605	0.99
11_M	15_M	0.602	0.99
241_K	248_N	0.601	0.99
176_V	205_L	0.601	0.99
16_A	28_V	0.599	0.99
140_E	143_F	0.599	0.99
96_N	167_Q	0.599	0.99
8_L	16_A	0.598	0.99
147_E	159_H	0.597	0.99
6_I	53_V	0.596	0.99
37_E	46_V	0.592	0.99
150_F	154_G	0.588	0.99
73_V	79_G	0.585	0.99
101_A	163_V	0.583	0.99
9_G	65_T	0.582	0.99
60_V	88_L	0.581	0.99
136_V	157_I	0.580	0.99
244_M	248_N	0.579	0.99
17_S	20_L	0.579	0.99
14_P	124_D	0.575	0.99
253_P	269_S	0.575	0.99
267_M	272_I	0.575	0.99
156_N	203_S	0.572	0.99
62_S	92_D	0.572	0.99
30_N	69_D	0.570	0.99
126_G	129_E	0.569	0.99
55_E	83_S	0.569	0.99
29_Y	50_P	0.567	0.99
59_I	146_V	0.564	0.99
149_I	152_A	0.562	0.99
213_F	216_Q	0.561	0.99
226_D	229_P	0.559	0.98
202_F	223_M	0.558	0.98
253_P	266_A	0.558	0.98
185_V	222_I	0.554	0.98
45_K	56_V	0.553	0.98
61_I	153_M	0.544	0.98
98_P	168_A	0.543	0.98
72_E	75_F	0.543	0.98
205_L	210_A	0.541	0.98
148_P	152_A	0.541	0.98
177_V	214_T	0.541	0.98
218_Y	276_G	0.540	0.98
74_L	104_V	0.539	0.98
158_I	207_T	0.537	0.98
17_S	38_K	0.537	0.98
91_V	150_F	0.536	0.98
54_A	80_V	0.535	0.98
256_G	259_L	0.535	0.98
141_D	145_R	0.531	0.98
70_V	104_V	0.531	0.98
189_L	252_L	0.531	0.98
175_V	190_L	0.531	0.98
30_N	36_A	0.530	0.98
58_E	88_L	0.530	0.98
36_A	39_L	0.524	0.98
214_T	218_Y	0.524	0.98
18_N	22_A	0.523	0.98
160_V	200_K	0.522	0.98
165_S	168_A	0.522	0.98
50_P	53_V	0.521	0.98
188_L	219_L	0.520	0.98
14_P	130_G	0.515	0.97
92_D	101_A	0.513	0.97
61_I	150_F	0.513	0.97
173_N	208_G	0.508	0.97
99_E	103_K	0.508	0.97
4_G	27_T	0.506	0.97
140_E	147_E	0.505	0.97
145_R	148_P	0.504	0.97
16_A	44_A	0.502	0.97
190_L	247_A	0.502	0.97
122_G	132_L	0.502	0.97
221_K	278_Q	0.502	0.97
133_T	208_G	0.500	0.97

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3dojA	3	0.9965	100	0.347	Contact Map
3pefA	5	0.9896	100	0.348	Contact Map
3obbA	4	0.9931	100	0.348	Contact Map
3pduA	4	0.9896	100	0.349	Contact Map
1vpdA	1	1	100	0.349	Contact Map
3ckyA	4	1	100	0.349	Contact Map
3g0oA	3	0.9758	100	0.356	Contact Map
1yb4A	4	0.9965	100	0.359	Contact Map
2uyyA	3	0.9896	100	0.36	Contact Map
3zgyA	2	0.9758	100	0.361	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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