Q97XZ6 - SULSO - GREMLIN Contacts

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Q97XZ6 - Uncharacterized protein

UniProt:	Q97XZ6	Sequences: MTLTIVVSYISQMSFQNPWWVDKNRILEDEHVKRARVIVPPIDESALILGPRQVGKTTYLKTTIKTLLERVDSRSILFFSCDAFSKKEELIGLVNEYRTLVNREESAYIFLDEITSVSDWNTALLHLFNAGYFNNSLVYVTGSSSINLRKEMLPGRPIKKYVFYPLNFRVYFDSFYKKLIQDHVKVDEKDELYENALKLLPYISELNKALLEYVRRGGFFATSFSENPLSLYETYKDAILSEFLKTERKESVFKVIIRKIIESYGSRISENTSAFRKFMAYRQRIYH	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	287 (230)
Sequences:	3542 (2928)
Seq/√Len:	193.1

SULSO - Q97XZ6 Q97YZ4 Q97YB3 Q97YN5 Q97Y74

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
81_C	111_L	4.234	1.00
124_L	140_V	4.079	1.00
51_P	54_V	3.814	1.00
45_S	128_F	3.764	1.00
271_N	275_F	3.492	1.00
74_R	106_S	3.141	1.00
60_L	141_T	3.013	1.00
59_Y	163_F	2.907	1.00
60_L	139_Y	2.739	1.00
44_E	221_A	2.674	1.00
61_K	78_F	2.600	1.00
175_F	212_E	2.514	1.00
48_I	60_L	2.503	1.00
125_L	129_N	2.341	1.00
64_I	110_F	2.330	1.00
51_P	219_F	2.300	1.00
48_I	163_F	2.273	1.00
62_T	65_K	2.150	1.00
54_V	163_F	2.112	1.00
31_H	59_Y	2.094	1.00
166_L	174_S	2.083	1.00
168_F	213_Y	2.027	1.00
83_A	130_A	2.020	1.00
89_E	92_G	1.932	1.00
30_E	167_N	1.932	1.00
37_V	66_T	1.913	1.00
251_S	255_V	1.906	1.00
172_F	209_A	1.862	1.00
45_S	124_L	1.855	1.00
53_Q	155_G	1.832	1.00
60_L	110_F	1.832	1.00
209_A	212_E	1.812	1.00
272_T	275_F	1.801	1.00
222_T	231_L	1.784	1.00
259_K	263_S	1.767	1.00
29_D	32_V	1.745	1.00
236_K	240_L	1.700	1.00
165_P	218_G	1.696	1.00
83_A	126_H	1.507	1.00
117_V	120_W	1.500	1.00
78_F	110_F	1.493	1.00
124_L	138_V	1.470	1.00
29_D	33_K	1.464	1.00
109_I	138_V	1.457	1.00
75_S	103_R	1.456	1.00
75_S	107_A	1.449	1.00
49_L	160_K	1.436	1.00
58_T	62_T	1.434	1.00
95_N	99_T	1.426	1.00
249_K	252_V	1.423	1.00
82_D	125_L	1.407	1.00
110_F	139_Y	1.403	1.00
109_I	136_S	1.400	1.00
47_L	157_P	1.396	1.00
33_K	37_V	1.381	1.00
223_S	229_L	1.371	1.00
235_Y	257_I	1.369	1.00
93_L	117_V	1.359	1.00
177_K	180_I	1.357	1.00
49_L	162_V	1.330	1.00
30_E	34_R	1.327	1.00
168_F	171_Y	1.322	1.00
177_K	209_A	1.315	1.00
83_A	129_N	1.292	1.00
171_Y	212_E	1.285	1.00
67_L	108_Y	1.280	1.00
90_L	94_V	1.279	1.00
168_F	172_F	1.276	1.00
244_L	250_E	1.257	1.00
273_S	277_K	1.252	1.00
89_E	93_L	1.243	1.00
30_E	169_R	1.242	1.00
271_N	281_Y	1.236	1.00
154_P	245_K	1.219	1.00
96_E	100_L	1.218	1.00
177_K	205_E	1.213	1.00
197_L	200_L	1.208	1.00
211_L	215_R	1.201	1.00
200_L	203_I	1.183	1.00
210_L	214_V	1.174	1.00
75_S	105_E	1.169	1.00
208_K	212_E	1.167	1.00
115_T	142_G	1.163	1.00
96_E	99_T	1.146	1.00
43_D	128_F	1.144	1.00
271_N	274_A	1.124	1.00
272_T	276_R	1.112	1.00
175_F	209_A	1.112	1.00
142_G	155_G	1.110	1.00
31_H	163_F	1.094	1.00
94_V	98_R	1.094	1.00
223_S	226_E	1.093	1.00
168_F	209_A	1.089	1.00
146_I	149_R	1.079	1.00
29_D	34_R	1.069	1.00
172_F	213_Y	1.068	1.00
30_E	33_K	1.062	1.00
224_F	227_N	1.060	1.00
171_Y	216_R	1.059	1.00
76_I	110_F	1.051	1.00
216_R	222_T	1.049	1.00
236_K	254_K	1.048	1.00
171_Y	213_Y	1.041	1.00
113_E	156_R	1.039	1.00
268_I	273_S	1.034	1.00
223_S	227_N	1.031	1.00
252_V	256_I	1.024	1.00
233_E	237_D	1.022	1.00
224_F	229_L	1.020	1.00
223_S	228_P	1.020	1.00
64_I	108_Y	1.008	1.00
150_K	241_S	1.005	1.00
47_L	140_V	1.003	1.00
92_G	95_N	1.002	1.00
169_R	173_D	0.999	1.00
67_L	76_I	0.996	1.00
127_L	138_V	0.996	1.00
64_I	76_I	0.994	1.00
198_K	202_Y	0.983	0.99
90_L	97_Y	0.983	0.99
125_L	146_I	0.978	0.99
110_F	141_T	0.974	0.99
113_E	142_G	0.971	0.99
125_L	128_F	0.969	0.99
142_G	156_R	0.963	0.99
203_I	206_L	0.959	0.99
52_R	242_E	0.954	0.99
114_I	121_N	0.952	0.99
250_E	254_K	0.950	0.99
154_P	237_D	0.949	0.99
105_E	135_N	0.943	0.99
256_I	273_S	0.943	0.99
35_A	67_L	0.941	0.99
35_A	38_I	0.937	0.99
47_L	160_K	0.933	0.99
90_L	93_L	0.930	0.99
46_A	139_Y	0.929	0.99
54_V	165_P	0.928	0.99
61_K	64_I	0.927	0.99
225_S	228_P	0.926	0.99
205_E	208_K	0.926	0.99
44_E	128_F	0.925	0.99
46_A	137_L	0.923	0.99
43_D	221_A	0.922	0.99
157_P	237_D	0.919	0.99
113_E	143_S	0.918	0.99
80_S	129_N	0.912	0.99
274_A	278_F	0.912	0.99
82_D	126_H	0.911	0.99
128_F	138_V	0.906	0.99
267_R	270_E	0.900	0.99
32_V	59_Y	0.898	0.99
157_P	160_K	0.896	0.99
212_E	223_S	0.886	0.99
226_E	229_L	0.879	0.99
109_I	127_L	0.879	0.99
212_E	216_R	0.878	0.99
129_N	156_R	0.874	0.99
81_C	117_V	0.870	0.99
51_P	164_Y	0.865	0.99
213_Y	218_G	0.857	0.99
265_G	268_I	0.854	0.98
241_S	245_K	0.845	0.98
240_L	254_K	0.840	0.98
263_S	276_R	0.837	0.98
51_P	57_T	0.832	0.98
165_P	219_F	0.831	0.98
48_I	59_Y	0.827	0.98
253_F	256_I	0.819	0.98
52_R	113_E	0.816	0.98
40_P	139_Y	0.810	0.98
116_S	122_T	0.807	0.98
80_S	83_A	0.802	0.98
197_L	201_P	0.800	0.98
196_A	199_L	0.796	0.98
255_V	258_R	0.794	0.98
171_Y	209_A	0.793	0.98
57_T	129_N	0.790	0.97
196_A	201_P	0.788	0.97
233_E	236_K	0.786	0.97
101_V	136_S	0.785	0.97
199_L	202_Y	0.781	0.97
68_L	137_L	0.776	0.97
86_K	92_G	0.775	0.97
53_Q	221_A	0.773	0.97
200_L	204_S	0.772	0.97
141_T	144_S	0.772	0.97
149_R	152_M	0.771	0.97
207_N	211_L	0.757	0.97
227_N	230_S	0.754	0.97
107_A	137_L	0.752	0.97
225_S	229_L	0.752	0.97
31_H	34_R	0.752	0.97
259_K	273_S	0.749	0.97
239_I	257_I	0.748	0.97
81_C	120_W	0.747	0.96
82_D	116_S	0.745	0.96
154_P	157_P	0.735	0.96
278_F	281_Y	0.734	0.96
37_V	63_T	0.727	0.96
32_V	35_A	0.727	0.96
57_T	112_D	0.724	0.96
64_I	78_F	0.717	0.96
238_A	253_F	0.716	0.96
263_S	266_S	0.716	0.96
155_G	221_A	0.715	0.96
62_T	66_T	0.713	0.95
196_A	200_L	0.712	0.95
121_N	157_P	0.707	0.95
259_K	262_E	0.706	0.95
154_P	238_A	0.697	0.95
168_F	206_L	0.696	0.95
196_A	204_S	0.694	0.95
153_L	156_R	0.693	0.95
30_E	173_D	0.692	0.95
48_I	161_Y	0.689	0.95
252_V	277_K	0.684	0.94
211_L	214_V	0.683	0.94
85_S	119_D	0.683	0.94
195_N	199_L	0.681	0.94
75_S	104_E	0.680	0.94
263_S	268_I	0.679	0.94
77_L	107_A	0.678	0.94
166_L	216_R	0.677	0.94
61_K	130_A	0.674	0.94
171_Y	174_S	0.673	0.94
196_A	202_Y	0.673	0.94
87_K	91_I	0.672	0.94
198_K	201_P	0.671	0.94
168_F	180_I	0.671	0.94
61_K	129_N	0.671	0.94
41_P	225_S	0.669	0.94
234_T	238_A	0.665	0.93
263_S	272_T	0.665	0.93
46_A	161_Y	0.660	0.93
43_D	233_E	0.660	0.93
198_K	203_I	0.659	0.93
149_R	246_T	0.656	0.93
76_I	108_Y	0.654	0.93
126_H	130_A	0.654	0.93
269_S	272_T	0.654	0.93
77_L	97_Y	0.653	0.93
119_D	122_T	0.649	0.93
87_K	92_G	0.647	0.92
127_L	137_L	0.645	0.92
167_N	213_Y	0.641	0.92
47_L	121_N	0.639	0.92
111_L	124_L	0.638	0.92
47_L	115_T	0.636	0.92
82_D	129_N	0.635	0.92
232_Y	236_K	0.633	0.92
118_S	178_K	0.627	0.91
240_L	258_R	0.627	0.91
143_S	155_G	0.624	0.91
205_E	209_A	0.623	0.91
52_R	142_G	0.622	0.91
102_N	105_E	0.622	0.91
116_S	245_K	0.621	0.91
166_L	171_Y	0.619	0.91
147_N	151_E	0.619	0.91
57_T	153_L	0.614	0.90
230_S	233_E	0.613	0.90
93_L	96_E	0.612	0.90
87_K	94_V	0.605	0.90
90_L	123_A	0.605	0.90
38_I	226_E	0.603	0.90
143_S	156_R	0.602	0.90
259_K	276_R	0.600	0.89
120_W	124_L	0.599	0.89
275_F	278_F	0.597	0.89
57_T	78_F	0.595	0.89
274_A	281_Y	0.594	0.89
34_R	38_I	0.593	0.89
91_I	94_V	0.591	0.89
157_P	238_A	0.591	0.89
115_T	155_G	0.589	0.89
203_I	207_N	0.589	0.89
60_L	76_I	0.587	0.88
121_N	144_S	0.586	0.88
53_Q	174_S	0.584	0.88
144_S	149_R	0.583	0.88
195_N	202_Y	0.581	0.88
53_Q	153_L	0.581	0.88
77_L	109_I	0.579	0.88
258_R	262_E	0.579	0.88
80_S	126_H	0.579	0.88
145_S	150_K	0.578	0.88
128_F	156_R	0.574	0.87
90_L	98_R	0.573	0.87
259_K	277_K	0.570	0.87
31_H	170_V	0.569	0.87
153_L	157_P	0.569	0.87
175_F	224_F	0.568	0.87
204_S	208_K	0.567	0.87
97_Y	102_N	0.566	0.86
91_I	95_N	0.565	0.86
42_I	234_T	0.564	0.86
87_K	122_T	0.563	0.86
81_C	115_T	0.562	0.86
33_K	66_T	0.562	0.86
197_L	202_Y	0.561	0.86
201_P	205_E	0.559	0.86
108_Y	124_L	0.556	0.86
32_V	66_T	0.555	0.85
89_E	94_V	0.553	0.85
195_N	198_K	0.549	0.85
80_S	116_S	0.549	0.85
141_T	156_R	0.547	0.85
240_L	244_L	0.544	0.84
29_D	37_V	0.544	0.84
35_A	161_Y	0.543	0.84
274_A	279_M	0.543	0.84
39_V	161_Y	0.543	0.84
226_E	230_S	0.542	0.84
53_Q	238_A	0.542	0.84
98_R	101_V	0.542	0.84
197_L	204_S	0.541	0.84
111_L	117_V	0.538	0.84
160_K	237_D	0.534	0.83
122_T	151_E	0.534	0.83
167_N	173_D	0.533	0.83
82_D	122_T	0.533	0.83
58_T	61_K	0.533	0.83
257_I	261_I	0.530	0.83
158_I	233_E	0.530	0.83
77_L	110_F	0.530	0.83
97_Y	127_L	0.528	0.83
212_E	230_S	0.527	0.82
261_I	264_Y	0.524	0.82
48_I	139_Y	0.523	0.82
74_R	104_E	0.519	0.81
147_N	243_F	0.517	0.81
77_L	90_L	0.515	0.81
116_S	125_L	0.514	0.81
54_V	219_F	0.513	0.81
114_I	144_S	0.512	0.81
43_D	158_I	0.512	0.81
39_V	158_I	0.509	0.80
174_S	178_K	0.508	0.80
33_K	38_I	0.507	0.80
116_S	146_I	0.506	0.80
244_L	253_F	0.504	0.80
167_N	170_V	0.503	0.79
63_T	163_F	0.501	0.79
108_Y	137_L	0.500	0.79

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2qenA	1	0.8537	99.9	0.666	Contact Map
2fnaA	1	0.8397	99.9	0.669	Contact Map
3pfiA	3	0.8153	99.6	0.765	Contact Map
1hqcA	1	0.8397	99.5	0.78	Contact Map
1w5sA	1	0.9199	99.3	0.797	Contact Map
1l8qA	1	0.9233	99.3	0.797	Contact Map
1fnnA	1	0.9199	99.3	0.8	Contact Map
2z4sA	1	0.7526	99.3	0.801	Contact Map
1sxjB	1	0.9059	99.3	0.803	Contact Map
4xgcE	1	0.8153	99.3	0.803	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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