Q97XY3 - SULSO - GREMLIN Contacts

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Q97XY3 - Nitric oxide reductase, subunit I (Cytochrome B) (NorB-2)

UniProt:	Q97XY3	Sequences: MAKRIKGDVWSNLVLVATVLVYVVYIALAGYTLTHLPPIPSVVETENGTVLFTGGEVISGKVLMQKYGLFDYGSFWGFGGYYGTDFTALALKVINQTTDPPTIKVDGPAYSSITDSETSRWVVSNNYVKAYNTLYNELCNILYNNSSNYGLKPNLVSPNDLRNITAFILWGAVVFHQIISFERYNISTFKKRLI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	194 (181)
Sequences:	417 (337)
Seq/√Len:	25.1

SULSO - Q97XY3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
113_I	121_W	3.662	1.00
46_E	125_N	3.641	1.00
89_L	93_V	3.061	1.00
43_V	121_W	3.032	1.00
96_Q	104_K	2.825	1.00
47_N	125_N	2.802	0.99
123_V	128_V	2.734	0.99
101_P	105_V	2.689	0.99
139_C	159_N	2.425	0.98
136_N	140_N	2.398	0.98
115_D	118_T	2.334	0.98
171_G	175_F	2.302	0.98
45_T	128_V	2.284	0.98
59_S	163_N	2.230	0.97
69_L	83_G	2.224	0.97
41_S	119_S	2.192	0.97
41_S	54_G	2.182	0.97
52_F	166_A	2.059	0.96
143_Y	161_L	2.010	0.95
56_E	163_N	1.962	0.94
113_I	177_Q	1.886	0.93
69_L	86_F	1.883	0.93
45_T	123_V	1.832	0.92
152_K	155_L	1.801	0.91
95_N	98_T	1.787	0.91
83_G	86_F	1.772	0.91
76_W	174_V	1.716	0.89
72_Y	151_L	1.714	0.89
108_P	124_S	1.693	0.89
144_N	154_N	1.648	0.87
15_L	70_F	1.578	0.85
43_V	123_V	1.558	0.84
123_V	131_Y	1.552	0.84
43_V	51_L	1.515	0.82
67_Y	142_L	1.489	0.81
17_A	26_I	1.485	0.81
26_I	63_L	1.462	0.80
157_S	161_L	1.460	0.80
46_E	122_V	1.458	0.80
45_T	49_T	1.447	0.79
75_F	160_D	1.428	0.78
42_V	120_R	1.427	0.78
19_V	23_V	1.399	0.77
115_D	181_F	1.382	0.76
15_L	74_S	1.382	0.76
70_F	75_F	1.379	0.76
123_V	169_L	1.373	0.75
90_A	169_L	1.359	0.74
109_A	176_H	1.356	0.74
8_D	98_T	1.342	0.74
27_A	80_G	1.342	0.74
97_T	100_P	1.340	0.73
95_N	107_G	1.332	0.73
176_H	185_N	1.329	0.73
72_Y	155_L	1.312	0.72
112_S	142_L	1.311	0.72
63_L	142_L	1.275	0.70
69_L	150_G	1.256	0.68
80_G	109_A	1.256	0.68
142_L	164_I	1.243	0.68
117_E	120_R	1.242	0.68
27_A	172_A	1.225	0.66
145_N	151_L	1.217	0.66
70_F	171_G	1.216	0.66
43_V	128_V	1.213	0.66
96_Q	99_D	1.191	0.64
173_V	186_I	1.190	0.64
42_V	50_V	1.185	0.64
57_V	65_Q	1.175	0.63
64_M	127_Y	1.152	0.62
98_T	105_V	1.152	0.62
64_M	69_L	1.151	0.61
72_Y	83_G	1.134	0.60
47_N	119_S	1.130	0.60
64_M	83_G	1.122	0.59
95_N	103_I	1.121	0.59
100_P	103_I	1.113	0.59
11_S	150_G	1.106	0.58
49_T	183_R	1.105	0.58
51_L	123_V	1.105	0.58
122_V	125_N	1.100	0.58
128_V	132_N	1.095	0.58
51_L	111_S	1.079	0.56
23_V	28_L	1.049	0.54
17_A	52_F	1.046	0.54
80_G	168_I	1.044	0.54
65_Q	70_F	1.042	0.54
51_L	56_E	1.042	0.54
41_S	51_L	1.038	0.53
44_E	50_V	1.034	0.53
180_S	185_N	1.031	0.53
94_I	127_Y	1.027	0.53
83_G	150_G	1.005	0.51
43_V	116_S	1.001	0.51
26_I	176_H	1.001	0.51
41_S	120_R	0.996	0.50
10_W	14_V	0.990	0.50
39_I	53_T	0.981	0.49
112_S	177_Q	0.977	0.49
64_M	150_G	0.965	0.48
50_V	122_V	0.964	0.48
64_M	86_F	0.958	0.48
7_G	80_G	0.957	0.48
52_F	181_F	0.951	0.47
89_L	138_L	0.946	0.47
59_S	175_F	0.934	0.46
56_E	162_R	0.930	0.46
63_L	156_V	0.921	0.45
8_D	30_G	0.913	0.44
113_I	124_S	0.902	0.44
17_A	61_K	0.902	0.44
140_N	145_N	0.901	0.44
29_A	64_M	0.899	0.43
54_G	58_I	0.891	0.43
152_K	161_L	0.887	0.43
21_V	82_Y	0.883	0.42
139_C	165_T	0.879	0.42
84_T	112_S	0.872	0.42
108_P	126_N	0.863	0.41
87_T	117_E	0.861	0.41
33_L	36_L	0.857	0.40
76_W	87_T	0.856	0.40
20_L	54_G	0.855	0.40
69_L	72_Y	0.852	0.40
98_T	101_P	0.851	0.40
76_W	86_F	0.849	0.40
55_G	59_S	0.840	0.39
164_I	168_I	0.839	0.39
40_P	53_T	0.838	0.39
50_V	126_N	0.836	0.39
111_S	185_N	0.836	0.39
66_K	83_G	0.832	0.39
90_A	94_I	0.825	0.38
114_T	118_T	0.804	0.37
53_T	131_Y	0.799	0.36
121_W	176_H	0.797	0.36
95_N	175_F	0.796	0.36
51_L	159_N	0.792	0.36
86_F	150_G	0.790	0.36
103_I	107_G	0.789	0.36
72_Y	161_L	0.787	0.36
61_K	78_F	0.786	0.36
46_E	119_S	0.785	0.36
64_M	70_F	0.784	0.35
25_Y	32_T	0.783	0.35
30_G	162_R	0.773	0.35
101_P	104_K	0.772	0.35
61_K	173_V	0.770	0.35
76_W	112_S	0.768	0.34
78_F	173_V	0.766	0.34
44_E	120_R	0.752	0.33
71_D	178_I	0.752	0.33
66_K	94_I	0.751	0.33
68_G	78_F	0.745	0.33
48_G	124_S	0.743	0.33
94_I	146_S	0.741	0.33
170_W	173_V	0.739	0.33
32_T	86_F	0.726	0.32
43_V	52_F	0.724	0.32
159_N	162_R	0.721	0.31
39_I	57_V	0.715	0.31
108_P	172_A	0.715	0.31
59_S	62_V	0.703	0.30
29_A	169_L	0.703	0.30
84_T	92_K	0.700	0.30
64_M	94_I	0.699	0.30
62_V	75_F	0.697	0.30
61_K	156_V	0.695	0.30
81_Y	85_D	0.693	0.30
140_N	162_R	0.693	0.30
133_T	147_S	0.692	0.30
52_F	56_E	0.690	0.29
15_L	185_N	0.687	0.29
136_N	139_C	0.687	0.29
51_L	181_F	0.687	0.29
29_A	32_T	0.686	0.29
129_K	132_N	0.686	0.29
153_P	157_S	0.684	0.29
20_L	24_V	0.680	0.29
89_L	110_Y	0.680	0.29
14_V	134_L	0.675	0.29
45_T	122_V	0.673	0.28
39_I	61_K	0.673	0.28
55_G	134_L	0.670	0.28
127_Y	150_G	0.668	0.28
54_G	104_K	0.665	0.28
20_L	144_N	0.663	0.28
112_S	121_W	0.662	0.28
37_P	76_W	0.662	0.28
63_L	124_S	0.659	0.28
75_F	78_F	0.658	0.28
61_K	121_W	0.653	0.27
163_N	166_A	0.648	0.27
47_N	132_N	0.648	0.27
153_P	177_Q	0.643	0.27
14_V	93_V	0.642	0.27
162_R	165_T	0.642	0.27
22_Y	78_F	0.642	0.27
90_A	131_Y	0.640	0.27
35_H	165_T	0.638	0.26
49_T	132_N	0.635	0.26
99_D	158_P	0.634	0.26
64_M	90_A	0.634	0.26
72_Y	87_T	0.631	0.26
29_A	92_K	0.630	0.26
97_T	115_D	0.626	0.26
42_V	129_K	0.624	0.26
94_I	110_Y	0.624	0.26
51_L	148_N	0.622	0.26
55_G	118_T	0.622	0.26
119_S	183_R	0.619	0.25
114_T	119_S	0.617	0.25
39_I	59_S	0.615	0.25
33_L	61_K	0.613	0.25
100_P	181_F	0.608	0.25
90_A	101_P	0.607	0.25
19_V	148_N	0.606	0.25
96_Q	107_G	0.601	0.24
76_W	92_K	0.600	0.24
133_T	136_N	0.598	0.24
80_G	148_N	0.597	0.24
151_L	155_L	0.597	0.24
107_G	136_N	0.593	0.24
66_K	174_V	0.593	0.24
151_L	161_L	0.590	0.24
116_S	133_T	0.588	0.24
19_V	30_G	0.587	0.24
95_N	122_V	0.586	0.24
15_L	183_R	0.577	0.23
59_S	160_D	0.577	0.23
64_M	146_S	0.576	0.23
31_Y	35_H	0.567	0.23
65_Q	184_Y	0.567	0.23
37_P	174_V	0.565	0.23
131_Y	135_Y	0.562	0.22
86_F	94_I	0.561	0.22
76_W	115_D	0.560	0.22
134_L	137_E	0.556	0.22
108_P	181_F	0.556	0.22
122_V	129_K	0.553	0.22
66_K	69_L	0.553	0.22
25_Y	89_L	0.552	0.22
87_T	139_C	0.551	0.22
177_Q	185_N	0.550	0.22
66_K	86_F	0.547	0.22
7_G	109_A	0.545	0.22
35_H	59_S	0.543	0.21
25_Y	29_A	0.543	0.21
28_L	185_N	0.542	0.21
67_Y	89_L	0.541	0.21
27_A	154_N	0.541	0.21
17_A	156_V	0.539	0.21
124_S	131_Y	0.539	0.21
107_G	111_S	0.534	0.21
167_F	171_G	0.533	0.21
69_L	94_I	0.528	0.21
67_Y	171_G	0.524	0.21
148_N	171_G	0.522	0.20
20_L	49_T	0.519	0.20
78_F	83_G	0.518	0.20
82_Y	109_A	0.511	0.20
96_Q	100_P	0.509	0.20
139_C	162_R	0.507	0.20
132_N	136_N	0.507	0.20
116_S	120_R	0.505	0.20
116_S	132_N	0.505	0.20
142_L	168_I	0.505	0.20
9_V	138_L	0.505	0.20
110_Y	146_S	0.501	0.19
116_S	128_V	0.501	0.19
7_G	21_V	0.500	0.19
83_G	94_I	0.500	0.19

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3ayfA	2	0.9742	100	0.139	Contact Map
3wfdC	1	0.732	98	0.893	Contact Map
4pj0V	1	0.6907	87.4	0.939	Contact Map
3mk7B	1	0.7629	76.6	0.946	Contact Map
2bn5A	1	0.1289	53.6	0.954	Contact Map
4xxlA	1	0.4433	52.4	0.954	Contact Map
4pwaA	3	0.4175	51.3	0.955	Contact Map
3oa8A	1	0.5619	41.8	0.957	Contact Map
4j20A	1	0.4227	38.4	0.958	Contact Map
3hq9A	2	0.7784	37.1	0.958	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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