Q97XY2 - SULSO - GREMLIN Contacts

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Q97XY2 - Uncharacterized protein

UniProt:	Q97XY2	Sequences: MAESNYDKVATEFTSCFINDYKHVKCPPYESWYRERTVYGISVQRVLEEYIKYGIYPKKQLADHISTELEFTSFLLFVEQEDEARKFIKEHIVSWVPKLIEDILANSKGEYTKLLGIALKQFLDYTIQTIFVVNR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	135 (121)
Sequences:	1035 (782)
Seq/√Len:	71.0

ECOLI - DMSD TORD
HALSA - DMSD
SULSO - Q97XY2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
50_Y	71_F	3.966	1.00
47_L	62_A	3.322	1.00
12_E	109_G	3.169	1.00
96_V	123_L	3.052	1.00
104_L	120_K	2.960	1.00
72_T	84_A	2.424	1.00
65_I	96_V	2.376	1.00
9_V	111_Y	2.357	1.00
99_L	103_I	2.316	1.00
100_I	119_L	2.290	1.00
14_T	18_I	2.275	1.00
30_E	34_R	2.264	1.00
33_Y	102_D	2.184	1.00
46_V	50_Y	2.149	1.00
104_L	117_I	2.093	1.00
71_F	87_F	1.899	1.00
76_L	84_A	1.894	1.00
96_V	100_I	1.860	1.00
30_E	91_H	1.844	1.00
20_D	24_V	1.833	1.00
72_T	122_F	1.824	1.00
55_I	74_F	1.789	1.00
73_S	77_F	1.715	1.00
84_A	126_T	1.660	1.00
103_I	116_G	1.607	0.99
89_K	127_I	1.606	0.99
110_E	113_K	1.535	0.99
115_L	119_L	1.480	0.99
86_K	90_E	1.457	0.99
30_E	68_E	1.436	0.99
30_E	46_V	1.434	0.99
65_I	99_L	1.433	0.99
97_P	120_K	1.417	0.98
29_Y	39_Y	1.350	0.98
68_E	71_F	1.346	0.98
72_T	126_T	1.340	0.98
12_E	107_S	1.329	0.98
27_P	32_W	1.309	0.97
10_A	14_T	1.298	0.97
69_L	123_L	1.283	0.97
29_Y	60_Q	1.274	0.97
64_H	118_A	1.261	0.97
46_V	68_E	1.224	0.96
30_E	94_S	1.218	0.96
72_T	88_I	1.187	0.95
120_K	124_D	1.145	0.94
13_F	64_H	1.142	0.94
101_E	120_K	1.120	0.94
32_W	37_T	1.092	0.93
44_Q	47_L	1.089	0.93
98_K	102_D	1.086	0.93
68_E	92_I	1.085	0.93
122_F	126_T	1.059	0.92
107_S	110_E	1.058	0.92
20_D	29_Y	1.027	0.90
19_N	24_V	1.022	0.90
65_I	119_L	1.017	0.90
46_V	71_F	1.016	0.90
114_L	121_Q	1.015	0.90
45_R	90_E	1.009	0.90
48_E	52_K	0.999	0.89
52_K	86_K	0.992	0.89
107_S	113_K	0.992	0.89
91_H	94_S	0.958	0.87
84_A	122_F	0.956	0.87
43_V	62_A	0.956	0.87
41_I	45_R	0.940	0.86
68_E	87_F	0.925	0.85
69_L	119_L	0.920	0.85
65_I	95_W	0.913	0.84
93_V	123_L	0.908	0.84
37_T	40_G	0.902	0.84
9_V	45_R	0.882	0.82
76_L	79_E	0.876	0.82
53_Y	75_L	0.875	0.82
13_F	33_Y	0.858	0.80
65_I	100_I	0.847	0.79
46_V	87_F	0.839	0.79
70_E	74_F	0.823	0.78
55_I	78_V	0.815	0.77
11_T	14_T	0.813	0.77
8_K	82_D	0.811	0.76
114_L	118_A	0.810	0.76
43_V	46_V	0.804	0.76
70_E	77_F	0.802	0.76
92_I	115_L	0.797	0.75
18_I	24_V	0.796	0.75
12_E	103_I	0.792	0.75
43_V	47_L	0.777	0.73
12_E	15_S	0.776	0.73
79_E	83_E	0.774	0.73
104_L	113_K	0.770	0.73
13_F	17_F	0.769	0.73
17_F	95_W	0.765	0.72
76_L	126_T	0.759	0.72
34_R	94_S	0.752	0.71
22_K	38_V	0.751	0.71
23_H	98_K	0.751	0.71
30_E	71_F	0.751	0.71
28_P	102_D	0.726	0.68
35_E	40_G	0.725	0.68
120_K	123_L	0.722	0.68
29_Y	70_E	0.713	0.67
44_Q	62_A	0.710	0.66
101_E	104_L	0.693	0.65
78_V	82_D	0.685	0.64
90_E	105_A	0.679	0.63
100_I	116_G	0.672	0.62
33_Y	112_T	0.670	0.62
34_R	42_S	0.668	0.62
29_Y	36_R	0.665	0.61
48_E	51_I	0.662	0.61
9_V	112_T	0.661	0.61
98_K	101_E	0.643	0.59
53_Y	71_F	0.640	0.58
12_E	25_K	0.640	0.58
32_W	35_E	0.636	0.58
40_G	70_E	0.635	0.58
110_E	121_Q	0.633	0.58
35_E	44_Q	0.633	0.58
62_A	91_H	0.633	0.58
30_E	42_S	0.632	0.58
13_F	99_L	0.632	0.58
86_K	128_Q	0.630	0.57
27_P	61_L	0.628	0.57
32_W	39_Y	0.626	0.57
117_I	124_D	0.620	0.56
50_Y	68_E	0.610	0.55
31_S	38_V	0.606	0.54
8_K	79_E	0.601	0.54
83_E	105_A	0.597	0.53
49_E	53_Y	0.596	0.53
15_S	73_S	0.595	0.53
26_C	118_A	0.592	0.53
16_C	94_S	0.591	0.53
13_F	76_L	0.588	0.52
12_E	108_K	0.587	0.52
85_R	89_K	0.585	0.52
17_F	112_T	0.579	0.51
8_K	52_K	0.578	0.51
15_S	128_Q	0.578	0.51
8_K	104_L	0.572	0.50
88_I	93_V	0.567	0.50
42_S	62_A	0.564	0.49
39_Y	122_F	0.564	0.49
87_F	94_S	0.564	0.49
72_T	75_L	0.563	0.49
14_T	20_D	0.558	0.49
58_K	104_L	0.557	0.48
78_V	81_E	0.554	0.48
80_Q	125_Y	0.551	0.48
75_L	84_A	0.548	0.47
81_E	107_S	0.546	0.47
75_L	105_A	0.545	0.47
9_V	78_V	0.545	0.47
49_E	52_K	0.544	0.47
97_P	127_I	0.544	0.47
74_F	77_F	0.540	0.46
24_V	27_P	0.537	0.46
49_E	86_K	0.537	0.46
83_E	115_L	0.534	0.46
119_L	123_L	0.534	0.46
32_W	43_V	0.534	0.46
81_E	85_R	0.532	0.45
50_Y	67_T	0.531	0.45
94_S	97_P	0.527	0.45
45_R	48_E	0.523	0.44
67_T	91_H	0.522	0.44
92_I	127_I	0.521	0.44
37_T	66_S	0.521	0.44
57_P	70_E	0.517	0.44
50_Y	62_A	0.516	0.43
45_R	81_E	0.515	0.43
26_C	96_V	0.515	0.43
15_S	105_A	0.514	0.43
13_F	28_P	0.511	0.43
54_G	102_D	0.507	0.42
67_T	70_E	0.505	0.42
13_F	81_E	0.503	0.42
85_R	127_I	0.502	0.42
97_P	124_D	0.502	0.42
100_I	126_T	0.500	0.42

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1n1cA	2	0.963	100	0.25	Contact Map
1s9uA	1	0.9704	100	0.261	Contact Map
2o9xA	2	0.8296	100	0.344	Contact Map
2xolA	2	0.8222	99.9	0.441	Contact Map
1ei9A	1	0.5778	9.9	0.939	Contact Map
4xpcA	1	0.5852	6.8	0.944	Contact Map
4g1qA	2	0.9556	6.4	0.944	Contact Map
4bouA	2	0.7037	6.3	0.945	Contact Map
2vofA	1	0.8741	4.8	0.947	Contact Map
3kdrA	5	0.8593	4	0.949	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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