Q97XX0 - SULSO - GREMLIN Contacts

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Q97XX0 - Uncharacterized protein

UniProt:	Q97XX0	Sequences: MTNITIRIDLNSKKQIYEQIANQIIELIAKGVLNPGDPLPSVREMAAMLSVNMLTVEKAYKYLEGEGFVTVYKKRFVVKTDIRDEKWKELMKEAVYRALAGGAKRDEILFFISALLR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	117 (107)
Sequences:	4644 (3519)
Seq/√Len:	340.2

ECOLI - YEGW MNGR YDCR PHNF FRLR YIHL YIDP YJIR
BACSU - YHCF YTRA GABR YISV YVOA YHDI YMFC YDEL GMUR YYDK YURK YDFD TRER YDEF YBGA YCXD
SULSO - Q97XX0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
34_N	37_D	3.908	1.00
109_L	113_S	3.580	1.00
27_L	32_V	2.849	1.00
25_I	66_E	2.430	1.00
14_K	22_N	2.387	1.00
72_Y	75_R	2.100	1.00
71_V	76_F	2.087	1.00
62_Y	65_G	2.052	1.00
39_L	69_V	2.014	1.00
104_K	107_E	1.967	1.00
90_L	97_R	1.940	1.00
44_E	48_M	1.919	1.00
90_L	93_E	1.861	1.00
36_G	70_T	1.847	1.00
21_A	62_Y	1.840	1.00
21_A	66_E	1.836	1.00
25_I	68_F	1.814	1.00
105_R	113_S	1.755	1.00
69_V	76_F	1.664	1.00
91_M	94_A	1.554	1.00
105_R	109_L	1.549	1.00
36_G	80_T	1.545	1.00
70_T	79_K	1.503	1.00
35_P	80_T	1.462	1.00
21_A	25_I	1.460	1.00
106_D	113_S	1.448	1.00
23_Q	27_L	1.443	1.00
42_V	53_M	1.433	1.00
110_F	113_S	1.429	1.00
27_L	33_L	1.398	1.00
57_E	61_K	1.382	1.00
94_A	98_A	1.372	1.00
35_P	81_D	1.325	1.00
18_E	22_N	1.310	1.00
28_I	78_V	1.297	1.00
58_K	62_Y	1.285	1.00
28_I	68_F	1.217	1.00
31_G	34_N	1.214	1.00
61_K	65_G	1.206	1.00
86_K	90_L	1.188	1.00
99_L	105_R	1.175	1.00
96_Y	100_A	1.151	1.00
23_Q	49_L	1.138	1.00
38_P	77_V	1.133	1.00
95_V	108_I	1.127	1.00
95_V	112_I	1.106	1.00
20_I	51_V	1.079	1.00
14_K	18_E	1.073	1.00
33_L	78_V	1.070	1.00
51_V	56_V	1.059	1.00
91_M	108_I	1.055	1.00
43_R	60_Y	1.025	1.00
38_P	44_E	1.008	1.00
45_M	60_Y	1.008	1.00
26_E	30_K	0.990	1.00
52_N	57_E	0.983	1.00
62_Y	66_E	0.982	1.00
108_I	112_I	0.980	1.00
87_W	98_A	0.978	1.00
93_E	97_R	0.976	1.00
57_E	76_F	0.969	1.00
109_L	112_I	0.966	1.00
106_D	110_F	0.960	1.00
92_K	96_Y	0.933	1.00
103_A	108_I	0.921	1.00
85_E	89_E	0.917	1.00
23_Q	26_E	0.911	1.00
90_L	94_A	0.906	1.00
22_N	25_I	0.903	1.00
61_K	64_E	0.893	1.00
16_I	52_N	0.888	1.00
97_R	101_G	0.886	1.00
9_D	12_S	0.870	1.00
54_L	57_E	0.866	1.00
54_L	61_K	0.845	1.00
88_K	111_F	0.839	1.00
24_I	28_I	0.838	1.00
98_A	108_I	0.838	1.00
97_R	100_A	0.834	1.00
43_R	46_A	0.824	1.00
20_I	59_A	0.816	1.00
64_E	71_V	0.814	1.00
15_Q	19_Q	0.812	1.00
60_Y	64_E	0.801	1.00
60_Y	76_F	0.796	1.00
54_L	71_V	0.785	1.00
86_K	89_E	0.771	1.00
49_L	60_Y	0.769	1.00
85_E	88_K	0.766	1.00
64_E	69_V	0.762	1.00
24_I	39_L	0.760	1.00
74_K	77_V	0.754	1.00
40_P	45_M	0.741	0.99
53_M	58_K	0.732	0.99
38_P	41_S	0.729	0.99
70_T	80_T	0.721	0.99
41_S	44_E	0.719	0.99
42_V	57_E	0.704	0.99
93_E	96_Y	0.700	0.99
67_G	79_K	0.690	0.99
87_W	103_A	0.689	0.99
87_W	90_L	0.689	0.99
95_V	99_L	0.684	0.99
105_R	108_I	0.680	0.99
57_E	71_V	0.676	0.99
10_L	20_I	0.674	0.99
8_I	16_I	0.674	0.99
16_I	54_L	0.669	0.99
24_I	63_L	0.665	0.99
89_E	93_E	0.656	0.99
24_I	33_L	0.656	0.99
87_W	94_A	0.652	0.99
106_D	109_L	0.647	0.99
104_K	108_I	0.644	0.99
42_V	58_K	0.641	0.99
25_I	63_L	0.636	0.98
60_Y	69_V	0.629	0.98
70_T	77_V	0.627	0.98
105_R	112_I	0.622	0.98
45_M	56_V	0.619	0.98
64_E	76_F	0.615	0.98
107_E	110_F	0.601	0.98
25_I	59_A	0.598	0.98
42_V	76_F	0.597	0.98
46_A	56_V	0.594	0.98
89_E	92_K	0.591	0.97
42_V	54_L	0.589	0.97
41_S	74_K	0.586	0.97
27_L	30_K	0.584	0.97
8_I	49_L	0.572	0.97
33_L	39_L	0.570	0.97
43_R	49_L	0.569	0.97
103_A	107_E	0.568	0.97
61_K	76_F	0.567	0.97
96_Y	99_L	0.563	0.97
83_R	86_K	0.561	0.97
38_P	54_L	0.557	0.96
24_I	45_M	0.557	0.96
99_L	109_L	0.554	0.96
21_A	59_A	0.552	0.96
56_V	59_A	0.546	0.96
8_I	23_Q	0.541	0.96
10_L	73_K	0.540	0.96
17_Y	59_A	0.539	0.96
72_Y	77_V	0.532	0.95
52_N	58_K	0.530	0.95
88_K	92_K	0.529	0.95
16_I	20_I	0.527	0.95
73_K	76_F	0.524	0.95
84_D	88_K	0.522	0.95
20_I	49_L	0.518	0.95
86_K	97_R	0.517	0.95
44_E	73_K	0.515	0.95
29_A	41_S	0.511	0.94
56_V	60_Y	0.509	0.94
84_D	107_E	0.506	0.94
13_K	18_E	0.505	0.94
46_A	60_Y	0.502	0.94
57_E	60_Y	0.501	0.94
9_D	86_K	0.500	0.94

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3ic7A	2	0.8718	99.8	0.407	Contact Map
2ra5A	2	0.1624	99.8	0.416	Contact Map
3by6A	2	0.9658	99.8	0.422	Contact Map
3neuA	2	0.9487	99.8	0.424	Contact Map
4r1hA	2	0.9231	99.8	0.425	Contact Map
4u0wA	2	0.9573	99.8	0.435	Contact Map
3tqnA	2	0.8547	99.8	0.437	Contact Map
2ek5A	4	0.8889	99.8	0.443	Contact Map
3f8mA	2	0.8376	99.8	0.457	Contact Map
4tv7A	2	0.9573	99.7	0.473	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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