Q97XV5 - SULSO - GREMLIN Contacts

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Q97XV5 - Third ORF in transposon ISC1229

UniProt:	Q97XV5	Sequences: MGDFTQEELYQLEYTPIVVEEIKVLAKTLLETQERLKEVRRMIEEQVPDNHVLLTIPGIGRLAAGIIIGIVGDIRRFPKPESFVAYCGLDPVVERSGRAVISRGISKRGNKYLRSLFYFLAVRNYSRNPTLLKFYETHKDRLKGRKLYVALARKLARIIWSVWYNNRPYEPK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	172 (156)
Sequences:	4773 (3463)
Seq/√Len:	277.3

SULSO - Q97XV5 Q97Z62 Q97Y06 Q97UQ6 Q97X29 Q97UF7 Q97WY7 Q97YE1 Q97WZ5 Q97X26 Q97X07 Q97ZN4 Q97VB2 Q97X12 Q97Y59 Q97XK2 Q97WC0 Q97VS0 Q7LXX5 Q97XR9 Q97TX3 Q97XM7 Q97UU8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
138_H	141_R	2.622	1.00
83_F	156_A	2.607	1.00
20_E	42_M	2.524	1.00
24_V	35_R	2.510	1.00
52_V	168_P	2.485	1.00
55_T	168_P	2.445	1.00
31_E	35_R	2.414	1.00
28_T	31_E	2.363	1.00
27_K	35_R	2.300	1.00
71_V	83_F	2.230	1.00
87_C	113_L	2.225	1.00
67_I	159_I	2.214	1.00
78_P	82_S	2.066	1.00
132_L	136_E	2.059	1.00
153_R	157_R	2.026	1.00
28_T	35_R	1.905	1.00
89_L	152_A	1.871	1.00
95_R	100_V	1.867	1.00
79_K	82_S	1.866	1.00
52_V	162_V	1.760	1.00
29_L	33_Q	1.755	1.00
87_C	156_A	1.749	1.00
131_L	151_L	1.746	1.00
139_K	145_R	1.726	1.00
77_F	86_Y	1.716	1.00
66_I	116_L	1.676	1.00
59_I	64_A	1.650	1.00
167_R	170_E	1.645	1.00
56_I	159_I	1.640	1.00
42_M	45_E	1.632	1.00
84_V	90_D	1.630	1.00
63_A	116_L	1.623	1.00
119_F	122_V	1.617	1.00
26_A	30_L	1.611	1.00
54_L	61_R	1.600	1.00
134_F	154_K	1.598	1.00
161_S	165_N	1.596	1.00
44_E	61_R	1.590	1.00
137_T	141_R	1.567	1.00
142_L	146_K	1.565	1.00
162_V	168_P	1.526	1.00
53_L	159_I	1.501	1.00
84_V	153_R	1.480	1.00
118_Y	152_A	1.468	1.00
131_L	158_I	1.466	1.00
52_V	55_T	1.453	1.00
135_Y	151_L	1.434	1.00
70_I	110_N	1.400	1.00
63_A	120_L	1.387	1.00
160_W	164_Y	1.371	1.00
139_K	144_G	1.359	1.00
136_E	140_D	1.356	1.00
143_K	146_K	1.355	1.00
56_I	162_V	1.345	1.00
121_A	151_L	1.308	1.00
24_V	38_E	1.300	1.00
56_I	155_L	1.280	1.00
125_Y	135_Y	1.267	1.00
134_F	138_H	1.256	1.00
24_V	28_T	1.237	1.00
33_Q	36_L	1.231	1.00
27_K	31_E	1.225	1.00
74_I	163_W	1.219	1.00
143_K	147_L	1.204	1.00
31_E	34_E	1.203	1.00
37_K	40_R	1.194	1.00
121_A	152_A	1.186	1.00
47_V	54_L	1.180	1.00
115_S	119_F	1.171	1.00
45_E	49_D	1.156	1.00
134_F	151_L	1.147	1.00
35_R	38_E	1.127	1.00
121_A	155_L	1.126	1.00
129_P	133_K	1.111	1.00
158_I	162_V	1.099	1.00
36_L	40_R	1.098	1.00
120_L	155_L	1.090	1.00
134_F	137_T	1.078	1.00
70_I	112_Y	1.069	1.00
129_P	132_L	1.021	1.00
138_H	147_L	1.011	1.00
71_V	74_I	1.006	1.00
118_Y	122_V	0.997	1.00
96_S	100_V	0.994	1.00
53_L	163_W	0.984	1.00
161_S	164_Y	0.982	1.00
117_F	156_A	0.971	1.00
33_Q	37_K	0.960	1.00
122_V	125_Y	0.954	1.00
105_I	114_R	0.949	1.00
47_V	50_N	0.946	1.00
54_L	64_A	0.937	1.00
59_I	63_A	0.928	1.00
24_V	42_M	0.921	1.00
59_I	159_I	0.920	1.00
15_T	18_V	0.902	1.00
40_R	44_E	0.901	1.00
133_K	137_T	0.900	1.00
81_E	153_R	0.899	1.00
20_E	23_K	0.890	1.00
131_L	155_L	0.887	1.00
107_K	114_R	0.882	1.00
42_M	46_Q	0.881	1.00
145_R	148_Y	0.869	1.00
93_V	100_V	0.861	1.00
17_I	42_M	0.858	1.00
137_T	140_D	0.856	1.00
20_E	24_V	0.856	1.00
27_K	34_E	0.850	1.00
67_I	113_L	0.847	1.00
138_H	142_L	0.846	1.00
28_T	32_T	0.845	1.00
118_Y	149_V	0.838	1.00
95_R	101_I	0.832	1.00
17_I	20_E	0.831	1.00
90_D	106_S	0.824	0.99
34_E	38_E	0.819	0.99
82_S	85_A	0.794	0.99
53_L	64_A	0.791	0.99
44_E	48_P	0.787	0.99
124_N	131_L	0.784	0.99
123_R	127_R	0.781	0.99
162_V	167_R	0.773	0.99
122_V	145_R	0.757	0.99
92_V	106_S	0.750	0.99
130_T	169_Y	0.747	0.99
134_F	150_A	0.747	0.99
19_V	23_K	0.745	0.99
80_P	157_R	0.744	0.99
40_R	43_I	0.741	0.99
145_R	149_V	0.739	0.99
59_I	155_L	0.736	0.99
21_E	24_V	0.735	0.99
144_G	148_Y	0.733	0.99
133_K	136_E	0.730	0.99
52_V	166_N	0.725	0.99
86_Y	110_N	0.724	0.99
79_K	160_W	0.720	0.99
66_I	70_I	0.713	0.99
32_T	36_L	0.712	0.99
47_V	65_G	0.706	0.98
144_G	147_L	0.705	0.98
34_E	37_K	0.704	0.98
84_V	157_R	0.698	0.98
22_I	25_L	0.697	0.98
37_K	41_R	0.694	0.98
138_H	150_A	0.687	0.98
25_L	28_T	0.687	0.98
90_D	107_K	0.686	0.98
90_D	93_V	0.685	0.98
135_Y	139_K	0.683	0.98
89_L	153_R	0.678	0.98
125_Y	139_K	0.677	0.98
38_E	42_M	0.677	0.98
16_P	20_E	0.676	0.98
109_G	114_R	0.671	0.98
138_H	143_K	0.670	0.98
85_A	90_D	0.669	0.98
62_L	66_I	0.669	0.98
90_D	114_R	0.667	0.98
59_I	67_I	0.646	0.97
157_R	160_W	0.646	0.97
122_V	126_S	0.643	0.97
119_F	123_R	0.642	0.97
158_I	161_S	0.642	0.97
50_N	54_L	0.636	0.97
88_G	114_R	0.626	0.97
122_V	152_A	0.626	0.97
159_I	162_V	0.625	0.97
44_E	54_L	0.620	0.96
105_I	150_A	0.616	0.96
115_S	118_Y	0.616	0.96
94_E	99_A	0.614	0.96
73_D	76_R	0.613	0.96
74_I	160_W	0.610	0.96
135_Y	148_Y	0.607	0.96
41_R	45_E	0.607	0.96
50_N	64_A	0.601	0.96
18_V	21_E	0.600	0.96
101_I	104_G	0.595	0.96
90_D	108_R	0.595	0.96
139_K	142_L	0.593	0.95
120_L	152_A	0.591	0.95
58_G	123_R	0.591	0.95
56_I	59_I	0.589	0.95
66_I	112_Y	0.588	0.95
92_V	103_R	0.587	0.95
30_L	34_E	0.585	0.95
43_I	65_G	0.584	0.95
24_V	27_K	0.582	0.95
116_L	120_L	0.581	0.95
100_V	103_R	0.577	0.95
130_T	158_I	0.577	0.95
117_F	159_I	0.574	0.95
125_Y	151_L	0.568	0.94
29_L	32_T	0.567	0.94
32_T	35_R	0.563	0.94
105_I	149_V	0.563	0.94
17_I	21_E	0.561	0.94
16_P	42_M	0.561	0.94
105_I	109_G	0.560	0.94
38_E	41_R	0.559	0.94
45_E	127_R	0.558	0.94
135_Y	147_L	0.555	0.94
48_P	61_R	0.554	0.94
80_P	160_W	0.553	0.93
93_V	102_S	0.547	0.93
128_N	132_L	0.537	0.92
50_N	65_G	0.535	0.92
84_V	89_L	0.535	0.92
15_T	19_V	0.535	0.92
94_E	103_R	0.534	0.92
77_F	83_F	0.530	0.92
98_R	101_I	0.526	0.92
26_A	76_R	0.525	0.92
122_V	146_K	0.524	0.92
95_R	99_A	0.522	0.91
40_R	62_L	0.522	0.91
120_L	124_N	0.522	0.91
27_K	38_E	0.520	0.91
80_P	85_A	0.520	0.91
99_A	104_G	0.518	0.91
67_I	71_V	0.514	0.91
65_G	112_Y	0.513	0.91
99_A	102_S	0.512	0.91
89_L	114_R	0.511	0.91
119_F	152_A	0.510	0.90
61_R	65_G	0.509	0.90
39_V	42_M	0.508	0.90
146_K	149_V	0.505	0.90
128_N	158_I	0.505	0.90
122_V	148_Y	0.505	0.90
136_E	139_K	0.503	0.90
89_L	118_Y	0.500	0.90

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3fhfA	1	0.7442	89.4	0.89	Contact Map
1pu6A	1	0.7791	88.3	0.892	Contact Map
2i5hA	1	0.657	86.7	0.894	Contact Map
1keaA	2	0.8023	85.7	0.896	Contact Map
4b21A	2	0.6628	84.1	0.898	Contact Map
3n0uA	1	0.7558	83.5	0.899	Contact Map
4ofaA	1	0.564	81.9	0.901	Contact Map
2a1jB	2	0.4477	81.6	0.901	Contact Map
2a1jA	1	0.3488	78.1	0.904	Contact Map
3c65A	1	0.1977	77.9	0.905	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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