Q97XV2 - SULSO - GREMLIN Contacts

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Q97XV2 - Uncharacterized protein

UniProt:	Q97XV2	Sequences: MSGKIADEILNNPQLLSALADKIYDKLKDEIVIKKLEETIANVKALQEEVKRQGEAISSLQNTVNKHTEAITSLQEAVKKQGEAIQSLQEAVKSLQETVNKHTEAITSLQEAVKKQGEAIEGLQKAVRKLQRAVMKLSVEVGSFTNRAGKGMERTMLKLYKKALELHGVDPKRVVHGMIKDEEGVIEKGKVFEVDFYETNDYVYVFEIKNLADKGAYDQIIIRKKLFYTKYKDKKIKIFLVANYVDKKVKKKLEEEGVEIIASHIIK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	267 (213)
Sequences:	879 (740)
Seq/√Len:	50.7

SULSO - Q97XV2 Q97Y73 Q7LXD0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
16_L	19_L	5.806	1.00
9_I	12_N	4.962	1.00
50_V	53_Q	4.277	1.00
36_L	39_T	4.195	1.00
15_L	20_A	3.746	1.00
43_V	46_L	3.313	1.00
35_K	40_I	3.034	1.00
8_E	13_P	2.963	1.00
92_V	95_L	2.863	1.00
81_Q	85_I	2.792	1.00
23_I	26_K	2.700	1.00
29_D	33_I	2.665	1.00
78_V	81_Q	2.629	1.00
22_K	27_L	2.506	1.00
91_A	96_Q	2.493	1.00
85_I	88_L	2.473	1.00
71_I	74_L	2.455	1.00
113_V	116_Q	2.329	1.00
127_V	130_L	2.299	1.00
12_N	16_L	2.169	1.00
120_I	123_L	2.040	1.00
56_A	61_Q	1.879	0.99
140_E	145_T	1.875	0.99
189_G	193_E	1.801	0.99
77_A	80_K	1.772	0.99
57_I	60_L	1.762	0.99
35_K	38_E	1.677	0.98
28_K	38_E	1.666	0.98
76_E	80_K	1.636	0.98
64_V	67_H	1.618	0.98
66_K	72_T	1.569	0.98
51_K	54_G	1.550	0.97
17_S	20_A	1.542	0.97
75_Q	79_K	1.538	0.97
182_E	185_V	1.499	0.97
32_V	36_L	1.471	0.96
31_I	35_K	1.444	0.96
10_L	14_Q	1.416	0.95
23_I	31_I	1.408	0.95
141_V	144_F	1.395	0.95
59_S	62_N	1.386	0.95
91_A	94_S	1.380	0.95
102_H	106_I	1.341	0.94
55_E	59_S	1.328	0.94
86_Q	89_Q	1.324	0.93
49_E	53_Q	1.323	0.93
99_V	102_H	1.312	0.93
19_L	23_I	1.309	0.93
199_T	203_V	1.304	0.93
31_I	34_K	1.289	0.92
173_R	177_G	1.286	0.92
56_A	59_S	1.283	0.92
7_D	12_N	1.283	0.92
60_L	64_V	1.280	0.92
34_K	38_E	1.266	0.92
93_K	96_Q	1.259	0.92
74_L	88_L	1.256	0.91
213_D	216_A	1.256	0.91
169_V	175_V	1.235	0.91
18_A	22_K	1.235	0.91
9_I	26_K	1.234	0.91
202_Y	206_F	1.234	0.91
59_S	63_T	1.231	0.91
72_T	76_E	1.218	0.90
129_K	133_A	1.212	0.90
15_L	18_A	1.208	0.90
84_A	89_Q	1.204	0.90
7_D	21_D	1.201	0.90
70_A	73_S	1.197	0.89
49_E	52_R	1.196	0.89
74_L	77_A	1.187	0.89
10_L	28_K	1.187	0.89
136_K	140_E	1.178	0.89
83_E	87_S	1.172	0.88
67_H	85_I	1.171	0.88
45_A	51_K	1.162	0.88
45_A	48_E	1.150	0.87
11_N	15_L	1.127	0.86
47_Q	51_K	1.120	0.86
14_Q	18_A	1.119	0.86
48_E	52_R	1.117	0.86
194_V	197_Y	1.115	0.86
157_L	171_P	1.100	0.85
120_I	131_Q	1.096	0.85
156_M	163_A	1.090	0.84
157_L	163_A	1.080	0.84
69_E	73_S	1.078	0.84
57_I	61_Q	1.062	0.83
134_V	137_L	1.062	0.83
97_E	103_T	1.057	0.83
86_Q	100_N	1.056	0.82
7_D	11_N	1.055	0.82
56_A	60_L	1.028	0.81
94_S	98_T	1.023	0.80
10_L	16_L	1.022	0.80
13_P	17_S	1.021	0.80
9_I	13_P	1.021	0.80
21_D	25_D	1.017	0.80
208_I	213_D	1.010	0.80
92_V	96_Q	1.002	0.79
152_M	156_M	1.000	0.79
83_E	101_K	0.999	0.79
7_D	10_L	0.983	0.78
190_K	198_E	0.981	0.78
192_F	195_D	0.979	0.77
58_S	61_Q	0.977	0.77
53_Q	57_I	0.977	0.77
26_K	35_K	0.976	0.77
199_T	202_Y	0.956	0.76
155_T	158_K	0.956	0.76
14_Q	29_D	0.947	0.75
30_E	34_K	0.946	0.75
104_E	126_A	0.940	0.74
90_E	94_S	0.940	0.74
11_N	14_Q	0.937	0.74
154_R	160_Y	0.936	0.74
30_E	33_I	0.932	0.74
17_S	28_K	0.929	0.74
121_E	137_L	0.919	0.73
33_I	37_E	0.918	0.73
18_A	21_D	0.913	0.72
72_T	79_K	0.906	0.72
20_A	24_Y	0.905	0.72
130_L	134_V	0.904	0.71
159_L	166_L	0.900	0.71
15_L	34_K	0.896	0.71
8_E	23_I	0.895	0.71
128_R	141_V	0.888	0.70
78_V	99_V	0.885	0.70
160_Y	165_E	0.879	0.69
11_N	37_E	0.876	0.69
200_N	204_Y	0.874	0.69
13_P	19_L	0.872	0.69
186_I	189_G	0.869	0.68
115_K	119_A	0.868	0.68
65_N	80_K	0.868	0.68
84_A	88_L	0.867	0.68
86_Q	90_E	0.863	0.68
106_I	109_L	0.859	0.68
163_A	168_G	0.849	0.67
67_H	95_L	0.848	0.67
20_A	25_D	0.847	0.66
152_M	158_K	0.842	0.66
60_L	91_A	0.841	0.66
160_Y	210_N	0.837	0.66
59_S	64_V	0.834	0.65
160_Y	163_A	0.832	0.65
37_E	40_I	0.825	0.64
10_L	30_E	0.822	0.64
33_I	36_L	0.816	0.64
8_E	20_A	0.813	0.63
210_N	213_D	0.810	0.63
13_P	28_K	0.806	0.63
37_E	69_E	0.804	0.62
12_N	17_S	0.797	0.62
54_G	60_L	0.787	0.61
118_E	133_A	0.787	0.61
189_G	196_F	0.787	0.61
10_L	24_Y	0.786	0.61
11_N	30_E	0.785	0.61
46_L	50_V	0.779	0.60
65_N	76_E	0.779	0.60
14_Q	17_S	0.776	0.60
66_K	70_A	0.773	0.59
23_I	37_E	0.770	0.59
15_L	38_E	0.768	0.59
211_L	214_K	0.763	0.58
155_T	168_G	0.763	0.58
13_P	24_Y	0.761	0.58
10_L	15_L	0.760	0.58
48_E	53_Q	0.759	0.58
72_T	75_Q	0.755	0.58
31_I	52_R	0.753	0.57
31_I	38_E	0.752	0.57
199_T	205_V	0.752	0.57
74_L	130_L	0.751	0.57
39_T	43_V	0.750	0.57
107_T	111_E	0.750	0.57
126_A	129_K	0.749	0.57
36_L	41_A	0.744	0.56
144_F	148_A	0.739	0.56
55_E	60_L	0.737	0.56
13_P	21_D	0.736	0.56
133_A	138_S	0.735	0.56
119_A	124_Q	0.728	0.55
47_Q	53_Q	0.725	0.54
101_K	105_A	0.725	0.54
120_I	165_E	0.722	0.54
11_N	36_L	0.716	0.54
44_K	47_Q	0.711	0.53
161_K	165_E	0.710	0.53
11_N	24_Y	0.707	0.53
24_Y	28_K	0.704	0.52
13_P	27_L	0.699	0.52
179_I	182_E	0.698	0.52
105_A	110_Q	0.698	0.52
28_K	33_I	0.696	0.52
214_K	217_Y	0.695	0.51
13_P	22_K	0.694	0.51
121_E	125_K	0.694	0.51
76_E	83_E	0.694	0.51
68_T	82_G	0.693	0.51
7_D	15_L	0.691	0.51
57_I	201_D	0.691	0.51
177_G	181_D	0.688	0.51
67_H	75_Q	0.687	0.51
68_T	71_I	0.686	0.50
24_Y	40_I	0.684	0.50
83_E	86_Q	0.684	0.50
210_N	214_K	0.683	0.50
106_I	116_Q	0.682	0.50
29_D	42_N	0.681	0.50
131_Q	149_G	0.680	0.50
13_P	23_I	0.677	0.50
161_K	175_V	0.677	0.50
115_K	129_K	0.677	0.50
162_K	167_H	0.676	0.49
176_H	179_I	0.674	0.49
105_A	108_S	0.674	0.49
9_I	20_A	0.674	0.49
161_K	164_L	0.673	0.49
40_I	47_Q	0.672	0.49
162_K	166_L	0.670	0.49
71_I	75_Q	0.670	0.49
45_A	49_E	0.670	0.49
65_N	79_K	0.666	0.48
8_E	22_K	0.666	0.48
101_K	113_V	0.654	0.47
55_E	79_K	0.651	0.47
48_E	127_V	0.649	0.47
7_D	25_D	0.645	0.46
54_G	75_Q	0.644	0.46
164_L	176_H	0.642	0.46
24_Y	44_K	0.642	0.46
74_L	78_V	0.639	0.46
10_L	17_S	0.639	0.46
40_I	46_L	0.635	0.45
25_D	31_I	0.634	0.45
66_K	69_E	0.632	0.45
20_A	38_E	0.630	0.45
79_K	82_G	0.625	0.44
184_G	208_I	0.624	0.44
10_L	22_K	0.623	0.44
175_V	208_I	0.619	0.44
165_E	184_G	0.617	0.43
55_E	64_V	0.616	0.43
143_S	147_R	0.614	0.43
16_L	23_I	0.611	0.43
190_K	197_Y	0.610	0.43
8_E	12_N	0.606	0.42
30_E	43_V	0.606	0.42
88_L	92_V	0.605	0.42
9_I	64_V	0.605	0.42
192_F	206_F	0.603	0.42
114_K	132_R	0.599	0.42
47_Q	50_V	0.599	0.42
74_L	79_K	0.595	0.41
18_A	25_D	0.595	0.41
55_E	61_Q	0.594	0.41
189_G	200_N	0.592	0.41
105_A	118_E	0.592	0.41
73_S	77_A	0.588	0.40
119_A	122_G	0.584	0.40
70_A	82_G	0.584	0.40
11_N	23_I	0.581	0.40
119_A	123_L	0.579	0.40
80_K	86_Q	0.577	0.39
37_E	47_Q	0.575	0.39
35_K	43_V	0.575	0.39
9_I	27_L	0.574	0.39
21_D	29_D	0.573	0.39
63_T	124_Q	0.573	0.39
7_D	22_K	0.573	0.39
25_D	28_K	0.572	0.39
7_D	19_L	0.568	0.38
7_D	27_L	0.567	0.38
83_E	90_E	0.567	0.38
66_K	73_S	0.567	0.38
134_V	205_V	0.566	0.38
72_T	100_N	0.564	0.38
34_K	42_N	0.563	0.38
147_R	204_Y	0.561	0.38
166_L	169_V	0.557	0.37
189_G	199_T	0.556	0.37
40_I	50_V	0.556	0.37
89_Q	101_K	0.554	0.37
164_L	208_I	0.553	0.37
19_L	34_K	0.548	0.37
14_Q	26_K	0.542	0.36
167_H	170_D	0.541	0.36
47_Q	52_R	0.541	0.36
73_S	76_E	0.541	0.36
29_D	52_R	0.539	0.36
179_I	199_T	0.535	0.35
21_D	42_N	0.533	0.35
108_S	112_A	0.533	0.35
22_K	25_D	0.532	0.35
159_L	211_L	0.531	0.35
8_E	45_A	0.531	0.35
162_K	165_E	0.527	0.35
12_N	39_T	0.525	0.34
124_Q	129_K	0.525	0.34
11_N	21_D	0.523	0.34
22_K	50_V	0.523	0.34
59_S	99_V	0.522	0.34
99_V	106_I	0.522	0.34
50_V	57_I	0.521	0.34
14_Q	40_I	0.518	0.34
66_K	99_V	0.515	0.33
112_A	117_G	0.514	0.33
79_K	83_E	0.512	0.33
195_D	198_E	0.511	0.33
192_F	196_F	0.509	0.33
17_S	37_E	0.507	0.33
83_E	95_L	0.506	0.33
71_I	87_S	0.505	0.33
9_I	22_K	0.503	0.32
23_I	27_L	0.501	0.32
119_A	144_F	0.501	0.32
112_A	115_K	0.500	0.32

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1i84S	2	0.1573	98.4	0.672	Contact Map
1c1gA	2	0.9738	97.8	0.72	Contact Map
2dfsA	2	0.4906	97.7	0.727	Contact Map
4linA	5	0.8764	97.6	0.731	Contact Map
3ojaB	1	0.4831	96.2	0.78	Contact Map
2v71A	3	0.5206	95.7	0.789	Contact Map
4iloA	3	0.8202	95	0.798	Contact Map
3o0zA	2	0.5805	95	0.799	Contact Map
4rsiB	1	0.4532	94.9	0.8	Contact Map
3na7A	1	0.8202	94.7	0.802	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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