Q97XU3 - SULSO - GREMLIN Contacts

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Q97XU3 - Uncharacterized protein

UniProt:	Q97XU3	Sequences: MFNIKDNYMEFTYKDKRLRFYGFLLNGHVYNQFISFEYGKIDFKNKTVIDIGANIGDSSIYFAINGAKEVYAIEPMPKLFNYLTENIRFNNITNIIPLNVAIGNEEGLIKIPNIDVGLDAYTKNFQNSENGNIIPVKTLRSIISEYVISENIVLKIDCEGCEYDAIYSLDNTTLDKISQIALEYHYGPYKLSEFLIEKGFKVEYTKPKRYNEHEIGILYAFK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	222 (178)
Sequences:	2212 (2078)
Seq/√Len:	155.7

HALSA - Q9HQP5 Q9HSW3
SULSO - Q97XU3 Q7LXF6 Q7LXE9 Q97XG4 Q7LXG2 Q97XT4 Q97X54 Q7LXE1 Q7LXF9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
80_F	97_P	3.561	1.00
103_G	136_V	3.352	1.00
77_P	132_N	3.327	1.00
158_C	165_A	3.235	1.00
106_E	141_S	3.053	1.00
73_I	142_I	2.700	1.00
108_L	133_I	2.696	1.00
104_N	164_D	2.619	1.00
71_Y	98_L	2.515	1.00
53_A	72_A	2.451	1.00
80_F	99_N	2.450	1.00
50_D	155_K	2.419	1.00
103_G	161_C	2.313	1.00
101_A	136_V	2.243	1.00
138_T	141_S	2.210	1.00
69_E	96_I	2.199	1.00
51_I	102_I	2.179	1.00
108_L	135_P	2.050	1.00
179_Q	200_F	2.002	1.00
110_K	133_I	1.980	1.00
104_N	167_Y	1.963	1.00
76_M	79_L	1.958	1.00
58_S	62_F	1.915	1.00
51_I	156_I	1.858	1.00
100_V	137_K	1.855	1.00
48_V	62_F	1.808	1.00
46_K	152_I	1.764	1.00
110_K	131_G	1.757	1.00
106_E	137_K	1.754	1.00
140_R	168_S	1.753	1.00
98_L	142_I	1.676	1.00
109_I	136_V	1.661	1.00
180_I	195_L	1.638	1.00
53_A	83_L	1.606	1.00
100_V	135_P	1.600	1.00
137_K	141_S	1.598	1.00
80_F	84_T	1.583	1.00
59_S	95_I	1.573	1.00
139_L	170_D	1.571	1.00
87_I	95_I	1.570	1.00
60_I	86_N	1.567	1.00
101_A	134_I	1.535	1.00
140_R	173_T	1.517	1.00
156_I	165_A	1.517	1.00
75_P	99_N	1.469	1.00
163_Y	167_Y	1.465	1.00
49_I	151_N	1.461	1.00
140_R	170_D	1.443	1.00
45_N	66_G	1.440	1.00
76_M	111_I	1.436	1.00
73_I	102_I	1.411	1.00
73_I	98_L	1.366	1.00
80_F	83_L	1.361	1.00
45_N	68_K	1.316	1.00
63_A	92_I	1.275	1.00
63_A	94_N	1.266	1.00
161_C	164_D	1.246	1.00
171_N	175_D	1.235	1.00
87_I	97_P	1.212	1.00
46_K	68_K	1.211	1.00
106_E	138_T	1.194	1.00
51_I	158_C	1.177	1.00
154_L	170_D	1.166	1.00
194_F	198_K	1.163	1.00
83_L	97_P	1.156	1.00
53_A	74_E	1.133	1.00
159_E	185_H	1.131	1.00
158_C	162_E	1.129	1.00
54_N	57_D	1.127	1.00
153_V	181_A	1.110	1.00
163_Y	194_F	1.100	0.99
171_N	198_K	1.100	0.99
102_I	139_L	1.098	0.99
71_Y	142_I	1.097	0.99
103_G	109_I	1.061	0.99
151_N	177_I	1.046	0.99
51_I	165_A	1.045	0.99
142_I	146_Y	1.045	0.99
193_E	197_E	1.044	0.99
158_C	161_C	1.043	0.99
60_I	90_N	1.035	0.99
48_V	68_K	1.029	0.99
164_D	167_Y	1.014	0.99
140_R	174_L	1.013	0.99
157_D	183_E	1.013	0.99
49_I	139_L	1.003	0.99
103_G	107_G	0.999	0.99
139_L	173_T	0.974	0.99
84_T	99_N	0.971	0.99
140_R	172_T	0.969	0.99
96_I	146_Y	0.968	0.99
77_P	99_N	0.960	0.99
102_I	137_K	0.959	0.99
184_Y	191_L	0.959	0.99
72_A	83_L	0.959	0.99
167_Y	194_F	0.954	0.98
165_A	168_S	0.954	0.98
156_I	166_I	0.951	0.98
167_Y	190_K	0.947	0.98
177_I	200_F	0.947	0.98
63_A	70_V	0.936	0.98
76_M	113_N	0.933	0.98
38_Y	43_F	0.929	0.98
70_V	95_I	0.928	0.98
154_L	180_I	0.928	0.98
32_Q	38_Y	0.922	0.98
48_V	70_V	0.910	0.98
75_P	101_A	0.908	0.98
172_T	176_K	0.900	0.98
192_S	196_I	0.900	0.98
170_D	174_L	0.893	0.98
84_T	88_R	0.885	0.98
84_T	97_P	0.883	0.98
31_N	34_I	0.868	0.97
85_E	88_R	0.867	0.97
109_I	123_K	0.867	0.97
54_N	183_E	0.866	0.97
172_T	175_D	0.862	0.97
47_T	152_I	0.857	0.97
59_S	70_V	0.856	0.97
120_A	159_E	0.847	0.97
47_T	71_Y	0.845	0.97
58_S	181_A	0.843	0.97
74_E	80_F	0.843	0.97
173_T	176_K	0.834	0.96
180_I	183_E	0.831	0.96
51_I	73_I	0.829	0.96
101_A	109_I	0.829	0.96
166_I	182_L	0.826	0.96
47_T	68_K	0.819	0.96
102_I	165_A	0.817	0.96
59_S	72_A	0.810	0.96
63_A	95_I	0.808	0.96
57_D	61_Y	0.807	0.96
167_Y	171_N	0.800	0.96
54_N	79_L	0.797	0.95
72_A	95_I	0.784	0.95
193_E	196_I	0.782	0.95
38_Y	41_I	0.777	0.95
171_N	194_F	0.777	0.95
106_E	135_P	0.773	0.95
166_I	194_F	0.771	0.95
51_I	168_S	0.769	0.95
79_L	83_L	0.768	0.94
31_N	37_E	0.767	0.94
143_I	173_T	0.764	0.94
48_V	66_G	0.756	0.94
76_M	132_N	0.755	0.94
137_K	145_E	0.754	0.94
86_N	90_N	0.751	0.94
75_P	80_F	0.741	0.93
103_G	164_D	0.731	0.93
87_I	92_I	0.728	0.93
31_N	35_S	0.725	0.93
154_L	179_Q	0.724	0.93
158_C	168_S	0.718	0.92
151_N	154_L	0.712	0.92
33_F	38_Y	0.707	0.92
104_N	138_T	0.707	0.92
30_Y	35_S	0.701	0.91
49_I	73_I	0.700	0.91
138_T	168_S	0.698	0.91
31_N	39_G	0.696	0.91
189_Y	193_E	0.696	0.91
144_S	172_T	0.694	0.91
102_I	138_T	0.693	0.91
82_Y	86_N	0.691	0.91
58_S	61_Y	0.683	0.90
58_S	185_H	0.675	0.90
175_D	198_K	0.675	0.90
63_A	68_K	0.673	0.90
48_V	59_S	0.672	0.89
49_I	71_Y	0.672	0.89
174_L	179_Q	0.671	0.89
59_S	63_A	0.664	0.89
101_A	107_G	0.663	0.89
163_Y	190_K	0.663	0.89
48_V	153_V	0.661	0.89
185_H	188_P	0.657	0.88
37_E	40_K	0.657	0.88
107_G	136_V	0.653	0.88
159_E	162_E	0.650	0.88
66_G	70_V	0.650	0.88
71_Y	96_I	0.648	0.88
55_I	86_N	0.643	0.87
102_I	170_D	0.640	0.87
51_I	139_L	0.634	0.87
92_I	95_I	0.634	0.87
185_H	202_V	0.631	0.86
35_S	42_D	0.628	0.86
162_E	182_L	0.625	0.86
69_E	149_S	0.622	0.86
178_S	200_F	0.622	0.86
174_L	180_I	0.620	0.85
79_L	121_Y	0.619	0.85
170_D	173_T	0.614	0.85
47_T	148_I	0.613	0.85
81_N	84_T	0.608	0.84
53_A	59_S	0.600	0.83
137_K	142_I	0.597	0.83
86_N	89_F	0.597	0.83
171_N	197_E	0.594	0.83
60_I	63_A	0.590	0.82
73_I	138_T	0.590	0.82
138_T	143_I	0.590	0.82
178_S	201_K	0.587	0.82
195_L	202_V	0.587	0.82
119_D	123_K	0.584	0.82
180_I	200_F	0.583	0.82
60_I	83_L	0.582	0.82
44_K	67_A	0.579	0.81
48_V	181_A	0.574	0.81
115_D	130_N	0.574	0.81
60_I	87_I	0.573	0.81
140_R	171_N	0.570	0.80
73_I	100_V	0.569	0.80
98_L	145_E	0.567	0.80
75_P	136_V	0.565	0.80
34_I	37_E	0.563	0.79
56_G	83_L	0.561	0.79
64_I	92_I	0.558	0.79
39_G	43_F	0.556	0.79
151_N	176_K	0.554	0.78
73_I	173_T	0.553	0.78
57_D	62_F	0.552	0.78
117_G	120_A	0.552	0.78
202_V	207_P	0.551	0.78
86_N	183_E	0.549	0.78
112_P	131_G	0.547	0.78
30_Y	34_I	0.546	0.77
174_L	177_I	0.545	0.77
50_D	59_S	0.544	0.77
30_Y	33_F	0.539	0.76
114_I	121_Y	0.534	0.76
159_E	179_Q	0.534	0.76
118_L	123_K	0.533	0.76
143_I	146_Y	0.531	0.75
111_I	132_N	0.531	0.75
173_T	177_I	0.530	0.75
63_A	66_G	0.530	0.75
29_V	35_S	0.529	0.75
200_F	206_K	0.528	0.75
201_K	204_Y	0.527	0.75
71_Y	148_I	0.525	0.75
158_C	185_H	0.525	0.75
83_L	87_I	0.524	0.74
75_P	111_I	0.522	0.74
117_G	122_T	0.521	0.74
34_I	38_Y	0.520	0.74
49_I	154_L	0.520	0.74
35_S	38_Y	0.519	0.74
190_K	193_E	0.518	0.74
150_E	178_S	0.518	0.74
38_Y	185_H	0.514	0.73
138_T	170_D	0.513	0.73
60_I	64_I	0.513	0.73
35_S	40_K	0.512	0.73
81_N	85_E	0.512	0.73
185_H	192_S	0.511	0.73
87_I	90_N	0.511	0.73
31_N	42_D	0.510	0.72
34_I	41_I	0.509	0.72
109_I	134_I	0.505	0.72
47_T	150_E	0.504	0.72
81_N	91_N	0.501	0.71
113_N	132_N	0.500	0.71
80_F	98_L	0.500	0.71

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2py6A	4	0.8649	100	0.397	Contact Map
3k6rA	1	0.8108	98.5	0.797	Contact Map
3a27A	1	0.8153	98.5	0.801	Contact Map
3v97A	1	0.8378	98.3	0.81	Contact Map
3axsA	2	0.8198	98.3	0.811	Contact Map
2yx1A	2	0.7883	98.3	0.812	Contact Map
3kr9A	1	0.6982	98.3	0.812	Contact Map
3opnA	1	0.7072	98.2	0.816	Contact Map
3evzA	1	0.8018	98.1	0.82	Contact Map
4qdjA	1	0.8378	98.1	0.821	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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