Q97XT6 - SULSO - GREMLIN Contacts

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Q97XT6 - Uncharacterized protein

UniProt:	Q97XT6	Sequences: MRVLLIAGKDDFNEDVSKVTGIGRYVREVYEGLKKQIDVEAYPLFDYSSIFSSINSIIKGTFHDYSSYDIIHLLSPKPFFPLRKGKAKWITTVHDLFFLKYNESKPSPFMQKIYLKSILSSDAIIAVSSLVKEDVEKLGYKKKIFVINPGIGEEFFTSPKKPEKKDVIKIGYIGRLDSERKDLIRGIEVFRKIKEKNVIFELWGNYNPDSEIFKRIKKESEEDPRIRIMGPAPDEKLVEIYDSFDAFFFPTKEEGFGLPIVEAQARGVPVIVFKDARIPEEACNYCIRINEEFPQIDYIKSFKEKYNDALRKYASKFSLGISVKNILNSYGSIMLEL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	337 (298)
Sequences:	57215 (48449)
Seq/√Len:	2806.6

ECOLI - WCAL WCAI RFAG WBBK RFAB GLGA WCAC
BACSU - YQGM YPJH YTCC COTSA EPSF GLGA TUAH EPSD TUAC YKVP CGEB TAGE
HALSA - Q9HSW1 Q9HS45 Q9HRP8 Q9HQT2 Q9HQQ0 Q9HSV2 Q9HSV4 Q9HRP9
SULSO - Q97XT6 Q97V80 Q980C8 Q97XT7 Q97V61 Q97VL4 Q97UU3 Q97XF6 Q7LXM9 Q97XT8 Q97UM0 Q97XT1 Q97XT9 Q97ZD3 Q7LXI2 Q97XU2 Q97XT5 Q7LXF8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
171_G	244_F	4.705	1.00
199_I	227_R	3.653	1.00
123_A	145_F	3.310	1.00
169_K	201_E	3.140	1.00
247_F	263_A	3.116	1.00
192_K	296_I	2.866	1.00
201_E	229_M	2.858	1.00
210_S	214_K	2.699	1.00
72_H	330_Y	2.683	1.00
188_E	216_I	2.658	1.00
167_V	199_I	2.655	1.00
172_Y	183_L	2.642	1.00
313_Y	316_K	2.637	1.00
182_D	185_R	2.194	1.00
132_K	136_E	2.166	1.00
201_E	227_R	2.140	1.00
216_I	220_S	2.049	1.00
274_K	279_P	2.041	1.00
169_K	199_I	2.041	1.00
298_Y	301_S	2.033	1.00
169_K	243_S	1.993	1.00
203_W	240_I	1.963	1.00
168_I	245_D	1.958	1.00
40_E	68_Y	1.941	1.00
170_I	246_A	1.934	1.00
40_E	66_S	1.915	1.00
37_I	327_L	1.862	1.00
282_A	286_C	1.858	1.00
190_F	200_F	1.858	1.00
301_S	304_E	1.806	1.00
182_D	252_K	1.804	1.00
267_G	311_R	1.788	1.00
285_Y	313_Y	1.749	1.00
287_I	298_Y	1.730	1.00
321_I	325_N	1.726	1.00
123_A	329_S	1.724	1.00
186_G	200_F	1.722	1.00
129_S	132_K	1.722	1.00
43_P	49_S	1.688	1.00
191_R	220_S	1.685	1.00
205_N	210_S	1.683	1.00
132_K	146_V	1.677	1.00
145_F	332_S	1.677	1.00
150_G	319_L	1.674	1.00
247_F	268_V	1.664	1.00
173_I	237_L	1.648	1.00
274_K	290_N	1.637	1.00
283_C	313_Y	1.637	1.00
72_H	92_T	1.636	1.00
91_T	121_S	1.634	1.00
195_E	300_K	1.626	1.00
327_L	331_G	1.617	1.00
126_A	144_I	1.617	1.00
290_N	294_P	1.603	1.00
185_R	252_K	1.598	1.00
129_S	280_E	1.597	1.00
287_I	301_S	1.576	1.00
218_K	223_D	1.570	1.00
132_K	144_I	1.557	1.00
32_G	323_V	1.512	1.00
209_D	212_I	1.510	1.00
190_F	198_V	1.508	1.00
186_G	248_F	1.477	1.00
307_N	310_L	1.474	1.00
129_S	146_V	1.470	1.00
272_V	278_I	1.461	1.00
201_E	240_I	1.444	1.00
27_R	31_E	1.440	1.00
194_K	300_K	1.440	1.00
203_W	229_M	1.421	1.00
232_A	236_K	1.420	1.00
184_I	216_I	1.418	1.00
180_R	253_E	1.413	1.00
233_P	236_K	1.406	1.00
177_D	180_R	1.406	1.00
238_V	266_R	1.392	1.00
125_I	329_S	1.370	1.00
300_K	303_K	1.368	1.00
294_P	298_Y	1.364	1.00
201_E	244_F	1.363	1.00
169_K	245_D	1.361	1.00
73_L	89_W	1.356	1.00
244_F	268_V	1.350	1.00
168_I	302_F	1.337	1.00
193_I	300_K	1.334	1.00
126_A	132_K	1.332	1.00
183_L	202_L	1.322	1.00
136_E	141_K	1.321	1.00
32_G	320_G	1.318	1.00
305_K	309_A	1.315	1.00
232_A	240_I	1.306	1.00
203_W	232_A	1.305	1.00
312_K	315_S	1.303	1.00
172_Y	186_G	1.296	1.00
125_I	326_I	1.282	1.00
289_I	298_Y	1.279	1.00
306_Y	310_L	1.263	1.00
242_D	266_R	1.254	1.00
325_N	328_N	1.244	1.00
236_K	239_E	1.242	1.00
35_K	324_K	1.233	1.00
229_M	232_A	1.221	1.00
189_V	295_Q	1.209	1.00
321_I	324_K	1.208	1.00
287_I	306_Y	1.207	1.00
171_G	203_W	1.205	1.00
296_I	300_K	1.204	1.00
216_I	219_E	1.201	1.00
256_F	261_V	1.201	1.00
170_I	248_F	1.190	1.00
123_A	332_S	1.178	1.00
309_A	312_K	1.169	1.00
168_I	246_A	1.166	1.00
156_F	266_R	1.160	1.00
318_S	321_I	1.157	1.00
322_S	325_N	1.153	1.00
294_P	297_D	1.152	1.00
234_D	237_L	1.152	1.00
205_N	231_P	1.150	1.00
176_L	202_L	1.150	1.00
35_K	327_L	1.147	1.00
215_R	219_E	1.140	1.00
185_R	273_F	1.140	1.00
25_Y	258_L	1.136	1.00
155_F	238_V	1.133	1.00
195_E	303_K	1.122	1.00
249_F	260_I	1.116	1.00
184_I	188_E	1.116	1.00
129_S	133_E	1.109	1.00
306_Y	309_A	1.100	1.00
185_R	188_E	1.095	1.00
126_A	135_V	1.092	1.00
319_L	322_S	1.091	1.00
170_I	299_I	1.090	1.00
237_L	241_Y	1.089	1.00
214_K	218_K	1.089	1.00
133_E	136_E	1.080	1.00
168_I	198_V	1.067	1.00
201_E	243_S	1.064	1.00
267_G	308_D	1.057	1.00
127_V	149_P	1.047	1.00
249_F	259_P	1.045	1.00
260_I	278_I	1.034	1.00
169_K	244_F	1.033	1.00
241_Y	266_R	1.022	1.00
170_I	190_F	1.022	1.00
273_F	289_I	1.022	1.00
238_V	242_D	1.022	1.00
185_R	292_E	1.022	1.00
307_N	311_R	1.021	1.00
289_I	295_Q	1.021	1.00
250_P	295_Q	1.018	1.00
55_N	59_K	1.015	1.00
284_N	298_Y	1.014	1.00
127_V	131_V	1.010	1.00
260_I	272_V	1.009	1.00
145_F	329_S	1.009	1.00
229_M	240_I	1.008	1.00
264_Q	270_V	1.004	1.00
28_E	31_E	1.000	1.00
322_S	326_I	0.994	1.00
297_D	301_S	0.993	1.00
251_T	254_E	0.993	1.00
277_R	280_E	0.987	1.00
112_K	115_L	0.982	1.00
94_H	258_L	0.981	1.00
211_E	214_K	0.975	1.00
20_T	23_G	0.971	1.00
62_F	66_S	0.971	1.00
247_F	259_P	0.971	1.00
156_F	238_V	0.970	1.00
211_E	215_R	0.966	1.00
175_R	180_R	0.964	1.00
257_G	278_I	0.963	1.00
171_G	240_I	0.962	1.00
32_G	35_K	0.959	1.00
173_I	241_Y	0.957	1.00
167_V	197_N	0.952	1.00
184_I	212_I	0.951	1.00
126_A	131_V	0.951	1.00
190_F	225_R	0.950	1.00
188_E	220_S	0.949	1.00
73_L	91_T	0.948	1.00
149_P	258_L	0.947	1.00
168_I	197_N	0.945	1.00
30_Y	41_A	0.942	1.00
89_W	121_S	0.942	1.00
268_V	307_N	0.937	1.00
186_G	250_P	0.936	1.00
252_K	292_E	0.932	1.00
153_E	318_S	0.930	1.00
134_D	138_L	0.929	1.00
285_Y	310_L	0.928	1.00
193_I	198_V	0.927	1.00
276_A	279_P	0.925	1.00
184_I	252_K	0.920	1.00
272_V	288_R	0.911	1.00
308_D	312_K	0.910	1.00
185_R	295_Q	0.909	1.00
28_E	319_L	0.909	1.00
150_G	322_S	0.906	1.00
173_I	203_W	0.905	1.00
324_K	328_N	0.899	1.00
217_K	222_E	0.898	1.00
24_R	28_E	0.896	1.00
63_H	68_Y	0.893	1.00
172_Y	202_L	0.893	1.00
134_D	137_K	0.892	1.00
263_A	268_V	0.891	1.00
217_K	228_I	0.890	1.00
199_I	225_R	0.889	1.00
30_Y	34_K	0.885	1.00
50_I	53_S	0.880	1.00
90_I	125_I	0.880	1.00
177_D	208_P	0.880	1.00
234_D	238_V	0.877	1.00
269_P	307_N	0.875	1.00
189_V	296_I	0.867	1.00
121_S	124_I	0.867	1.00
264_Q	285_Y	0.865	1.00
127_V	255_G	0.853	1.00
212_I	215_R	0.846	1.00
152_G	155_F	0.846	1.00
271_I	289_I	0.845	1.00
187_I	217_K	0.845	1.00
195_E	198_V	0.843	1.00
165_K	168_I	0.839	1.00
260_I	270_V	0.839	1.00
264_Q	310_L	0.838	1.00
241_Y	268_V	0.838	1.00
193_I	296_I	0.834	1.00
273_F	291_E	0.834	1.00
260_I	281_E	0.833	1.00
212_I	216_I	0.833	1.00
254_E	257_G	0.825	1.00
249_F	278_I	0.822	1.00
145_F	325_N	0.821	1.00
272_V	282_A	0.820	1.00
282_A	288_R	0.820	1.00
136_E	144_I	0.817	1.00
90_I	123_A	0.816	1.00
130_L	133_E	0.816	1.00
239_E	243_S	0.812	1.00
264_Q	313_Y	0.805	1.00
324_K	327_L	0.804	1.00
271_I	298_Y	0.803	1.00
188_E	191_R	0.803	1.00
181_K	254_E	0.802	1.00
54_I	57_I	0.798	1.00
240_I	243_S	0.797	1.00
88_K	122_D	0.797	1.00
172_Y	250_P	0.793	1.00
318_S	322_S	0.793	1.00
74_L	94_H	0.793	1.00
25_Y	94_H	0.788	1.00
217_K	220_S	0.788	1.00
274_K	288_R	0.773	1.00
275_D	278_I	0.770	1.00
125_I	147_I	0.767	1.00
133_E	137_K	0.766	1.00
28_E	152_G	0.765	1.00
147_I	329_S	0.765	1.00
297_D	300_K	0.754	1.00
248_F	299_I	0.753	1.00
319_L	323_V	0.751	1.00
193_I	299_I	0.750	1.00
54_I	58_I	0.749	1.00
28_E	32_G	0.746	1.00
328_N	332_S	0.745	1.00
130_L	134_D	0.742	1.00
20_T	175_R	0.740	1.00
181_K	259_P	0.738	1.00
108_P	111_Q	0.735	1.00
279_P	288_R	0.733	1.00
171_G	241_Y	0.733	1.00
172_Y	200_F	0.731	1.00
94_H	127_V	0.731	1.00
290_N	293_F	0.731	1.00
239_E	242_D	0.729	1.00
26_V	74_L	0.728	1.00
159_P	242_D	0.726	1.00
191_R	222_E	0.725	1.00
95_D	180_R	0.722	1.00
179_E	184_I	0.721	1.00
181_K	251_T	0.721	1.00
313_Y	317_F	0.719	1.00
232_A	237_L	0.718	1.00
148_N	325_N	0.718	1.00
320_G	324_K	0.716	1.00
215_R	218_K	0.715	1.00
34_K	39_V	0.714	1.00
111_Q	115_L	0.710	1.00
174_G	183_L	0.710	1.00
152_G	156_F	0.708	1.00
310_L	313_Y	0.707	1.00
72_H	326_I	0.704	1.00
24_R	27_R	0.703	1.00
311_R	314_A	0.701	1.00
147_I	326_I	0.700	1.00
127_V	258_L	0.696	1.00
173_I	247_F	0.693	1.00
188_E	192_K	0.690	1.00
261_V	317_F	0.677	1.00
328_N	331_G	0.676	1.00
73_L	79_F	0.675	1.00
326_I	330_Y	0.675	1.00
36_Q	327_L	0.674	1.00
74_L	92_T	0.674	1.00
172_Y	247_F	0.673	1.00
246_A	299_I	0.672	1.00
217_K	226_I	0.668	1.00
174_G	181_K	0.667	1.00
170_I	198_V	0.664	1.00
25_Y	92_T	0.664	1.00
179_E	252_K	0.663	1.00
34_K	37_I	0.662	1.00
329_S	332_S	0.660	1.00
147_I	325_N	0.659	1.00
90_I	330_Y	0.655	1.00
75_S	78_P	0.651	1.00
257_G	260_I	0.651	1.00
51_F	55_N	0.649	1.00
35_K	320_G	0.648	1.00
63_H	66_S	0.647	1.00
25_Y	149_P	0.645	1.00
168_I	171_G	0.642	1.00
305_K	308_D	0.641	1.00
316_K	321_I	0.641	1.00
145_F	148_N	0.637	1.00
73_L	82_L	0.636	1.00
176_L	210_S	0.635	1.00
323_V	327_L	0.629	1.00
190_F	193_I	0.628	1.00
148_N	280_E	0.627	1.00
214_K	217_K	0.627	1.00
284_N	287_I	0.627	1.00
25_Y	326_I	0.626	1.00
256_F	317_F	0.626	1.00
308_D	311_R	0.625	1.00
273_F	295_Q	0.625	1.00
62_F	65_Y	0.621	1.00
214_K	228_I	0.619	1.00
248_F	295_Q	0.618	1.00
240_I	244_F	0.615	1.00
169_K	240_I	0.613	1.00
53_S	59_K	0.611	1.00
213_F	216_I	0.611	1.00
130_L	279_P	0.610	1.00
24_R	234_D	0.610	1.00
185_R	189_V	0.607	1.00
189_V	193_I	0.606	1.00
247_F	270_V	0.606	1.00
249_F	257_G	0.603	1.00
189_V	299_I	0.596	1.00
50_I	56_S	0.596	1.00
52_S	55_N	0.596	1.00
264_Q	307_N	0.595	1.00
309_A	313_Y	0.593	1.00
153_E	265_A	0.592	1.00
187_I	226_I	0.592	1.00
246_A	271_I	0.592	1.00
70_I	330_Y	0.591	1.00
30_Y	39_V	0.591	1.00
19_V	231_P	0.590	1.00
131_V	134_D	0.590	1.00
197_N	225_R	0.585	1.00
171_G	247_F	0.585	1.00
285_Y	309_A	0.585	1.00
157_T	242_D	0.584	1.00
36_Q	39_V	0.584	1.00
282_A	285_Y	0.583	1.00
291_E	294_P	0.582	1.00
196_K	303_K	0.575	1.00
35_K	323_V	0.573	1.00
184_I	209_D	0.571	1.00
148_N	317_F	0.571	1.00
132_K	141_K	0.570	1.00
37_I	331_G	0.568	1.00
52_S	56_S	0.567	1.00
196_K	300_K	0.564	1.00
92_T	326_I	0.564	1.00
193_I	196_K	0.563	1.00
148_N	256_F	0.563	1.00
176_L	183_L	0.563	1.00
182_D	273_F	0.562	1.00
203_W	237_L	0.560	1.00
191_R	219_E	0.559	1.00
50_I	57_I	0.559	1.00
275_D	279_P	0.559	1.00
129_S	148_N	0.559	1.00
54_I	59_K	0.558	1.00
85_G	88_K	0.557	1.00
157_T	160_K	0.557	1.00
29_V	32_G	0.553	1.00
310_L	314_A	0.553	1.00
112_K	116_K	0.552	1.00
131_V	255_G	0.552	1.00
123_A	127_V	0.550	1.00
264_Q	314_A	0.549	1.00
68_Y	87_A	0.548	1.00
63_H	67_S	0.548	1.00
126_A	146_V	0.548	1.00
217_K	223_D	0.547	1.00
70_I	90_I	0.547	1.00
186_G	190_F	0.546	1.00
32_G	319_L	0.542	1.00
92_T	125_I	0.541	1.00
51_F	59_K	0.540	1.00
189_V	248_F	0.539	1.00
289_I	294_P	0.538	1.00
93_V	131_V	0.537	1.00
89_W	122_D	0.537	1.00
94_H	149_P	0.536	1.00
136_E	139_G	0.535	1.00
274_K	291_E	0.535	1.00
179_E	209_D	0.534	1.00
29_V	326_I	0.529	1.00
25_Y	29_V	0.529	1.00
28_E	258_L	0.529	1.00
155_F	234_D	0.528	1.00
22_I	75_S	0.528	1.00
189_V	192_K	0.528	1.00
50_I	54_I	0.526	1.00
267_G	307_N	0.525	1.00
241_Y	247_F	0.524	1.00
241_Y	259_P	0.522	1.00
31_E	34_K	0.522	1.00
182_D	292_E	0.520	1.00
259_P	263_A	0.520	1.00
109_F	112_K	0.516	1.00
28_E	150_G	0.516	1.00
283_C	316_K	0.515	1.00
173_I	259_P	0.514	1.00
136_E	143_K	0.513	1.00
68_Y	71_I	0.510	1.00
148_N	322_S	0.509	1.00
198_V	302_F	0.508	1.00
113_I	116_K	0.507	1.00
194_K	296_I	0.507	1.00
128_S	131_V	0.506	1.00
263_A	270_V	0.505	1.00
250_P	273_F	0.504	1.00
196_K	225_R	0.502	1.00
241_Y	263_A	0.502	1.00
154_E	157_T	0.500	1.00
71_I	87_A	0.500	1.00
53_S	57_I	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2r60A	1	0.9733	100	0.271	Contact Map
4n9wA	1	0.911	100	0.272	Contact Map
3froA	3	0.9763	100	0.294	Contact Map
3c48A	2	0.9585	100	0.297	Contact Map
2qzsA	1	0.9496	100	0.302	Contact Map
1rzuA	1	0.9585	100	0.305	Contact Map
3okpA	1	0.9466	100	0.308	Contact Map
2x6qA	1	0.9436	100	0.308	Contact Map
3oy2A	2	0.9318	100	0.315	Contact Map
2jjmA	4	0.9228	100	0.324	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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