Q97XR6 - SULSO - GREMLIN Contacts

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Q97XR6 - Uncharacterized protein

UniProt:	Q97XR6	Sequences: MAKGWIDCFYDYHKSLTPEDYFMDYNTFKYYGSNRMIEDVFINGYVDVAITQPQYLQYFYRESFGNTEEFGKLALNNPNRFVIGTRWDPRDGEEGKEKLEEDVRRYRVKPWQMRHVKLYTAEWKDVNGKLSRGWRLDSKEAFEFIEFSKSLGIDILVAHKGPTVWPLDKDAFDITDVDAAASSFPEIKFVVTHIGLPRLDDFVWTAVQDKNIYAGLAVASAFIHKRPRYFAQIMAELLFWLGPDRILMGSDYAIWNPKWILEEFAKFELPEDVKKEYGVELTLDIKKKILFENASKLWGIPLPPRDDEVGKRAKPLIVKV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	320 (245)
Sequences:	3386 (2282)
Seq/√Len:	145.8

SULSO - Q97XR6 Q7LX84 Q97UJ5 Q97YW2 Q97Z10

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
42_I	80_R	5.259	1.00
142_F	183_S	4.361	1.00
100_E	147_F	3.983	1.00
149_K	186_E	3.701	1.00
282_T	285_I	3.646	1.00
244_D	288_K	3.573	1.00
287_K	292_E	3.502	1.00
68_E	101_E	3.281	1.00
149_K	184_F	3.148	1.00
142_F	184_F	3.099	1.00
147_F	150_S	3.014	1.00
85_T	102_D	2.923	1.00
99_L	144_F	2.844	1.00
98_K	101_E	2.795	1.00
103_V	153_I	2.709	1.00
291_F	295_S	2.647	1.00
84_G	115_H	2.272	1.00
100_E	104_R	2.190	1.00
83_I	113_M	2.032	1.00
288_K	296_K	1.990	1.00
243_P	285_I	1.977	1.00
47_D	291_F	1.948	1.00
100_E	151_L	1.882	1.00
104_R	151_L	1.873	1.00
285_I	288_K	1.867	1.00
146_E	150_S	1.861	1.00
38_E	43_N	1.837	1.00
101_E	105_R	1.825	1.00
243_P	288_K	1.791	1.00
134_W	140_E	1.786	1.00
247_L	297_L	1.769	1.00
197_P	202_F	1.753	1.00
152_G	186_E	1.702	1.00
92_G	96_K	1.702	1.00
91_D	94_E	1.680	1.00
100_E	150_S	1.666	1.00
74_A	83_I	1.656	1.00
146_E	184_F	1.654	1.00
295_S	300_I	1.650	1.00
235_A	239_F	1.614	1.00
190_V	297_L	1.591	1.00
51_T	81_F	1.590	1.00
103_V	151_L	1.588	1.00
204_W	209_D	1.584	1.00
181_A	189_F	1.576	1.00
288_K	292_E	1.554	1.00
206_A	209_D	1.531	1.00
82_V	114_R	1.491	1.00
102_D	113_M	1.487	1.00
283_L	287_K	1.483	1.00
48_V	82_V	1.479	1.00
142_F	146_E	1.433	1.00
105_R	111_W	1.433	1.00
144_F	148_S	1.431	1.00
32_G	35_R	1.430	1.00
142_F	145_I	1.395	1.00
84_G	298_W	1.381	1.00
147_F	151_L	1.378	1.00
152_G	188_K	1.376	1.00
99_L	116_V	1.370	1.00
64_F	98_K	1.349	1.00
87_W	144_F	1.342	1.00
152_G	299_G	1.335	1.00
115_H	157_V	1.335	1.00
37_I	77_N	1.334	1.00
36_M	49_A	1.321	1.00
247_L	293_N	1.316	1.00
257_P	260_I	1.308	1.00
99_L	151_L	1.307	1.00
159_H	251_D	1.306	1.00
149_K	187_I	1.303	1.00
145_I	156_L	1.282	1.00
288_K	293_N	1.282	1.00
96_K	147_F	1.280	1.00
197_P	200_D	1.265	1.00
71_G	75_L	1.256	1.00
99_L	148_S	1.250	1.00
35_R	38_E	1.246	1.00
40_V	80_R	1.246	1.00
87_W	95_G	1.245	1.00
172_F	191_V	1.234	1.00
181_A	212_I	1.230	1.00
68_E	98_K	1.229	1.00
149_K	152_G	1.217	1.00
204_W	208_Q	1.217	1.00
292_E	296_K	1.202	1.00
85_T	113_M	1.201	1.00
137_D	179_A	1.199	1.00
188_K	297_L	1.198	1.00
143_E	146_E	1.189	1.00
148_S	156_L	1.188	1.00
157_V	298_W	1.182	1.00
134_W	141_A	1.181	1.00
146_E	149_K	1.181	1.00
262_E	266_K	1.173	1.00
93_E	97_E	1.172	1.00
145_I	184_F	1.168	1.00
60_Y	94_E	1.156	1.00
70_F	83_I	1.156	1.00
34_N	77_N	1.149	1.00
238_L	281_L	1.138	0.99
287_K	291_F	1.099	0.99
238_L	246_I	1.097	0.99
71_G	113_M	1.092	0.99
78_P	81_F	1.077	0.99
282_T	286_K	1.077	0.99
175_T	181_A	1.076	0.99
116_V	156_L	1.074	0.99
179_A	182_S	1.062	0.99
69_E	72_K	1.062	0.99
39_D	43_N	1.037	0.99
259_W	262_E	1.019	0.99
71_G	111_W	1.013	0.99
214_A	217_A	1.012	0.99
96_K	100_E	1.004	0.99
286_K	290_L	1.000	0.99
292_E	295_S	0.999	0.99
238_L	285_I	0.998	0.99
64_F	101_E	0.997	0.99
199_L	203_V	0.994	0.99
233_I	237_L	0.980	0.98
216_L	220_S	0.978	0.98
139_K	142_F	0.977	0.98
87_W	116_V	0.975	0.98
34_N	38_E	0.970	0.98
39_D	252_Y	0.963	0.98
244_D	296_K	0.960	0.98
190_V	247_L	0.955	0.98
243_P	289_I	0.948	0.98
97_E	100_E	0.945	0.98
64_F	68_E	0.938	0.98
103_V	147_F	0.933	0.98
52_Q	157_V	0.933	0.98
157_V	192_T	0.922	0.98
215_G	219_A	0.922	0.98
33_S	37_I	0.918	0.98
72_K	75_L	0.915	0.98
238_L	243_P	0.913	0.98
257_P	261_L	0.913	0.98
37_I	42_I	0.913	0.98
94_E	97_E	0.911	0.97
211_N	215_G	0.910	0.97
262_E	265_A	0.901	0.97
231_A	235_A	0.894	0.97
99_L	147_F	0.887	0.97
295_S	299_G	0.875	0.97
284_D	288_K	0.873	0.97
217_A	220_S	0.872	0.97
50_I	82_V	0.871	0.97
38_E	42_I	0.868	0.97
236_E	240_W	0.863	0.97
211_N	216_L	0.861	0.96
263_E	267_F	0.858	0.96
205_T	208_Q	0.850	0.96
179_A	183_S	0.846	0.96
34_N	76_N	0.833	0.96
101_E	111_W	0.832	0.96
210_K	216_L	0.831	0.96
50_I	298_W	0.831	0.96
268_E	286_K	0.828	0.96
71_G	105_R	0.823	0.95
137_D	174_I	0.822	0.95
210_K	213_Y	0.822	0.95
67_T	98_K	0.820	0.95
49_A	81_F	0.819	0.95
283_L	286_K	0.812	0.95
37_I	40_V	0.812	0.95
281_L	289_I	0.811	0.95
102_D	111_W	0.809	0.95
247_L	294_A	0.806	0.95
257_P	268_E	0.804	0.95
92_G	95_G	0.801	0.95
294_A	298_W	0.796	0.95
48_V	79_N	0.794	0.94
190_V	298_W	0.794	0.94
134_W	138_S	0.794	0.94
52_Q	193_H	0.792	0.94
99_L	103_V	0.790	0.94
215_G	218_V	0.790	0.94
196_L	200_D	0.788	0.94
72_K	76_N	0.788	0.94
197_P	201_D	0.787	0.94
96_K	143_E	0.785	0.94
264_F	267_F	0.785	0.94
192_T	215_G	0.783	0.94
118_L	158_A	0.782	0.94
213_Y	217_A	0.781	0.94
175_T	180_A	0.780	0.94
205_T	209_D	0.779	0.94
69_E	73_L	0.778	0.94
66_N	69_E	0.773	0.94
210_K	218_V	0.773	0.94
258_K	262_E	0.770	0.93
198_R	202_F	0.766	0.93
194_I	237_L	0.763	0.93
116_V	144_F	0.758	0.93
236_E	239_F	0.757	0.93
75_L	78_P	0.757	0.93
105_R	112_Q	0.754	0.93
136_L	171_A	0.745	0.92
261_L	265_A	0.744	0.92
52_Q	298_W	0.742	0.92
154_D	190_V	0.742	0.92
293_N	296_K	0.741	0.92
73_L	81_F	0.741	0.92
212_I	217_A	0.738	0.92
143_E	147_F	0.737	0.92
213_Y	297_L	0.737	0.92
196_L	202_F	0.737	0.92
33_S	76_N	0.735	0.92
33_S	73_L	0.734	0.92
193_H	254_I	0.733	0.92
212_I	216_L	0.731	0.92
37_I	80_R	0.731	0.92
188_K	296_K	0.729	0.92
60_Y	64_F	0.725	0.91
40_V	81_F	0.724	0.91
232_Q	239_F	0.721	0.91
268_E	281_L	0.716	0.91
242_G	285_I	0.715	0.91
263_E	266_K	0.712	0.91
84_G	157_V	0.710	0.90
154_D	187_I	0.708	0.90
210_K	214_A	0.708	0.90
212_I	215_G	0.706	0.90
98_K	102_D	0.704	0.90
216_L	219_A	0.698	0.90
210_K	215_G	0.698	0.90
281_L	285_I	0.697	0.90
188_K	213_Y	0.690	0.89
139_K	183_S	0.689	0.89
48_V	295_S	0.689	0.89
260_I	263_E	0.687	0.89
50_I	84_G	0.684	0.89
117_K	157_V	0.681	0.89
246_I	289_I	0.680	0.88
180_A	183_S	0.678	0.88
265_A	286_K	0.677	0.88
57_Q	61_R	0.676	0.88
99_L	199_L	0.666	0.87
74_A	113_M	0.664	0.87
40_V	46_V	0.663	0.87
232_Q	235_A	0.663	0.87
141_A	145_I	0.662	0.87
88_D	94_E	0.661	0.87
209_D	216_L	0.661	0.87
154_D	297_L	0.658	0.87
199_L	202_F	0.657	0.87
215_G	249_G	0.654	0.86
54_Q	254_I	0.654	0.86
40_V	49_A	0.654	0.86
214_A	219_A	0.650	0.86
198_R	201_D	0.649	0.86
97_E	186_E	0.646	0.86
197_P	203_V	0.645	0.86
103_V	111_W	0.644	0.86
211_N	217_A	0.643	0.86
93_E	96_K	0.642	0.85
73_L	78_P	0.641	0.85
214_A	241_L	0.641	0.85
172_F	237_L	0.636	0.85
67_T	253_A	0.636	0.85
210_K	217_A	0.634	0.85
35_R	39_D	0.634	0.85
84_G	190_V	0.632	0.85
259_W	263_E	0.630	0.84
59_F	63_S	0.629	0.84
281_L	286_K	0.629	0.84
89_P	92_G	0.628	0.84
189_F	245_R	0.627	0.84
24_D	27_T	0.625	0.84
258_K	261_L	0.615	0.83
207_V	210_K	0.613	0.83
214_A	218_V	0.610	0.82
232_Q	236_E	0.602	0.82
84_G	192_T	0.601	0.81
257_P	264_F	0.598	0.81
39_D	46_V	0.594	0.81
77_N	81_F	0.592	0.81
216_L	248_M	0.590	0.80
32_G	36_M	0.590	0.80
114_R	300_I	0.587	0.80
148_S	153_I	0.585	0.80
23_M	26_N	0.584	0.80
104_R	111_W	0.584	0.80
71_G	85_T	0.582	0.79
188_K	245_R	0.581	0.79
28_F	35_R	0.577	0.79
103_V	112_Q	0.577	0.79
66_N	193_H	0.574	0.78
39_D	44_G	0.574	0.78
52_Q	84_G	0.573	0.78
136_L	195_G	0.572	0.78
209_D	212_I	0.572	0.78
37_I	43_N	0.572	0.78
156_L	187_I	0.568	0.78
53_P	56_L	0.565	0.77
258_K	268_E	0.565	0.77
204_W	211_N	0.565	0.77
150_S	186_E	0.565	0.77
59_F	90_R	0.565	0.77
182_S	204_W	0.562	0.77
92_G	143_E	0.561	0.77
63_S	88_D	0.560	0.77
120_T	163_T	0.559	0.77
23_M	27_T	0.555	0.76
95_G	144_F	0.554	0.76
116_V	148_S	0.554	0.76
212_I	219_A	0.553	0.76
37_I	81_F	0.552	0.76
212_I	218_V	0.551	0.76
71_G	83_I	0.551	0.76
211_N	218_V	0.550	0.75
150_S	184_F	0.549	0.75
85_T	99_L	0.549	0.75
263_E	268_E	0.547	0.75
117_K	192_T	0.547	0.75
67_T	87_W	0.545	0.75
117_K	159_H	0.543	0.75
176_D	179_A	0.542	0.74
182_S	208_Q	0.542	0.74
157_V	190_V	0.541	0.74
238_L	242_G	0.541	0.74
216_L	246_I	0.540	0.74
119_Y	123_W	0.539	0.74
68_E	111_W	0.539	0.74
234_M	237_L	0.538	0.74
67_T	95_G	0.537	0.74
259_W	264_F	0.537	0.74
198_R	203_V	0.536	0.74
213_Y	293_N	0.535	0.73
102_D	105_R	0.534	0.73
117_K	249_G	0.534	0.73
54_Q	192_T	0.534	0.73
235_A	238_L	0.532	0.73
67_T	83_I	0.532	0.73
178_D	209_D	0.531	0.73
154_D	247_L	0.531	0.73
54_Q	119_Y	0.530	0.73
116_V	151_L	0.530	0.73
234_M	238_L	0.529	0.73
214_A	246_I	0.526	0.72
261_L	264_F	0.525	0.72
175_T	179_A	0.524	0.72
120_T	133_G	0.524	0.72
213_Y	296_K	0.524	0.72
264_F	290_L	0.523	0.72
57_Q	94_E	0.523	0.72
50_I	115_H	0.521	0.72
139_K	143_E	0.520	0.71
160_K	191_V	0.519	0.71
99_L	153_I	0.518	0.71
68_E	102_D	0.518	0.71
159_H	215_G	0.517	0.71
58_Y	61_R	0.517	0.71
52_Q	117_K	0.514	0.71
29_K	39_D	0.513	0.70
81_F	189_F	0.513	0.70
25_Y	29_K	0.512	0.70
61_R	65_G	0.509	0.70
251_D	254_I	0.508	0.70
210_K	219_A	0.508	0.70
71_G	102_D	0.505	0.69
268_E	280_E	0.504	0.69
32_G	38_E	0.503	0.69
136_L	160_K	0.502	0.69
215_G	250_S	0.502	0.69
196_L	199_L	0.500	0.68

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4ofcA	4	0.8156	100	0.423	Contact Map
2hbvA	3	0.7969	100	0.425	Contact Map
4lanA	2	0.8344	100	0.425	Contact Map
4dziA	2	0.8406	100	0.425	Contact Map
4qrnA	2	0.8187	100	0.431	Contact Map
3nurA	2	0.7969	100	0.431	Contact Map
4l6dA	4	0.8031	100	0.438	Contact Map
3irsA	3	0.8156	100	0.443	Contact Map
4qroA	5	0.85	100	0.449	Contact Map
2gwgA	2	0.8375	100	0.451	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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