Q97XR1 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97XR1 - Transposase ISC1217

UniProt:	Q97XR1	Sequences: MTKELTREEYYKALEKAVNEVILSMTGTRKDVAKRLLLGAVVGRNATEIAQEAEMNYETVLNNLDKAAQVNLIEVVKKLVGDHPVLLIIDDTHDHKLYARAMPVSRNGAQIFYCRAHKRFESAIQLLVIGVKDLVNNQIYVIHIIAYIPRKVEEELKRRGEEVKFKTKIDALLEFLSSLSGLNVKSKVFDSWYVNSRTLQGNTVGELKSSARVVESGRSVPVSEFPQGEYLVEYLGTPIKLLVIDDYKGYGRRYFFSTDLNDTAEDIITTWENRWDIEVLIRELKALGLEGGSFLTWVRNSGFVALKALSLLVVQYFKYSTGLMLGAKRLARLIKSIYREAGGIKKLFKRRRKP	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	354 (299)
Sequences:	1060 (822)
Seq/√Len:	47.5

SULSO - Q97XR1 Q97XK5 Q97Y34 Q97ZD8 Q97YE4 Q7LYK0 Q97VQ0 Q7LX51

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
189_F	205_G	3.474	1.00
154_E	157_K	3.363	1.00
129_I	179_L	3.247	1.00
145_I	178_S	3.155	1.00
154_E	158_R	3.138	1.00
155_E	158_R	3.126	1.00
43_G	46_A	2.869	1.00
36_L	303_F	2.738	1.00
166_K	174_E	2.728	1.00
89_I	172_L	2.706	1.00
91_D	192_W	2.596	1.00
221_P	227_Q	2.560	1.00
287_L	307_K	2.550	1.00
155_E	160_G	2.526	1.00
155_E	159_R	2.499	1.00
153_E	158_R	2.457	1.00
87_L	179_L	2.371	1.00
44_R	47_T	2.343	1.00
90_D	274_R	2.334	1.00
89_I	187_K	2.318	1.00
90_D	278_E	2.198	1.00
72_L	75_V	2.184	1.00
143_H	178_S	2.167	1.00
222_V	228_G	2.094	1.00
156_L	159_R	2.085	1.00
204_V	271_W	2.063	1.00
88_I	132_K	2.044	1.00
154_E	160_G	2.033	1.00
142_I	182_L	2.013	0.99
220_V	223_S	2.006	0.99
223_S	228_G	1.999	0.99
128_V	281_I	1.987	0.99
153_E	159_R	1.976	0.99
222_V	227_Q	1.911	0.99
127_L	193_Y	1.908	0.99
220_V	227_Q	1.879	0.99
220_V	232_V	1.879	0.99
143_H	175_F	1.877	0.99
222_V	226_P	1.830	0.99
43_G	47_T	1.825	0.99
274_R	278_E	1.813	0.99
157_K	160_G	1.794	0.99
85_V	131_V	1.778	0.99
91_D	168_K	1.769	0.99
91_D	193_Y	1.763	0.99
224_E	228_G	1.749	0.98
240_K	244_I	1.732	0.98
153_E	157_K	1.694	0.98
278_E	285_K	1.692	0.98
228_G	232_V	1.690	0.98
221_P	226_P	1.682	0.98
220_V	229_E	1.648	0.98
223_S	227_Q	1.634	0.98
153_E	160_G	1.633	0.98
294_F	299_R	1.613	0.97
145_I	174_E	1.603	0.97
154_E	159_R	1.600	0.97
26_T	30_K	1.593	0.97
221_P	225_F	1.581	0.97
62_N	65_D	1.579	0.97
130_G	139_I	1.558	0.97
145_I	301_S	1.557	0.97
220_V	228_G	1.548	0.97
64_L	306_L	1.539	0.97
90_D	285_K	1.525	0.96
293_S	299_R	1.522	0.96
72_L	76_V	1.519	0.96
63_N	292_G	1.510	0.96
221_P	228_G	1.490	0.96
150_R	154_E	1.486	0.96
32_V	59_T	1.479	0.96
194_V	205_G	1.468	0.95
22_I	25_M	1.448	0.95
22_I	30_K	1.421	0.95
275_W	278_E	1.420	0.95
202_N	258_T	1.377	0.94
240_K	243_V	1.363	0.93
231_L	234_Y	1.360	0.93
193_Y	274_R	1.354	0.93
147_Y	165_F	1.352	0.93
49_I	52_E	1.349	0.93
224_E	227_Q	1.347	0.93
93_H	121_E	1.346	0.93
224_E	229_E	1.343	0.93
95_H	117_H	1.329	0.92
274_R	285_K	1.323	0.92
240_K	245_D	1.319	0.92
220_V	226_P	1.316	0.92
91_D	275_W	1.310	0.92
296_T	307_K	1.309	0.92
86_L	270_T	1.308	0.92
168_K	193_Y	1.299	0.91
89_I	129_I	1.285	0.91
93_H	114_C	1.283	0.91
130_G	281_I	1.251	0.90
129_I	175_F	1.249	0.90
90_D	275_W	1.240	0.89
303_F	310_S	1.240	0.89
223_S	226_P	1.233	0.89
244_I	247_Y	1.230	0.89
279_V	283_E	1.229	0.89
21_V	24_S	1.223	0.89
194_V	200_Q	1.221	0.89
69_Q	302_G	1.212	0.88
243_V	246_D	1.199	0.88
115_R	192_W	1.197	0.88
157_K	162_E	1.197	0.88
211_A	256_F	1.194	0.88
222_V	229_E	1.183	0.87
199_L	205_G	1.178	0.87
92_T	278_E	1.168	0.86
193_Y	285_K	1.167	0.86
206_E	253_R	1.165	0.86
221_P	224_E	1.163	0.86
19_N	23_L	1.152	0.86
275_W	285_K	1.150	0.86
24_S	71_N	1.149	0.85
154_E	161_E	1.148	0.85
239_I	243_V	1.143	0.85
114_C	121_E	1.140	0.85
109_A	122_S	1.137	0.85
103_P	300_N	1.136	0.85
295_L	303_F	1.121	0.84
28_T	33_A	1.117	0.84
297_W	301_S	1.115	0.84
39_G	49_I	1.109	0.83
86_L	188_V	1.104	0.83
33_A	37_L	1.096	0.83
48_E	51_Q	1.094	0.83
77_K	80_V	1.091	0.82
94_D	102_M	1.084	0.82
102_M	124_I	1.082	0.82
20_E	25_M	1.078	0.82
93_H	112_F	1.071	0.81
239_I	242_L	1.068	0.81
190_D	278_E	1.065	0.81
227_Q	232_V	1.060	0.80
228_G	231_L	1.056	0.80
38_L	41_V	1.049	0.80
204_V	257_S	1.048	0.80
63_N	69_Q	1.041	0.79
203_T	258_T	1.039	0.79
22_I	29_R	1.030	0.79
304_V	307_K	1.025	0.78
292_G	300_N	1.020	0.78
230_Y	233_E	1.016	0.78
306_L	310_S	1.016	0.78
90_D	277_I	1.014	0.77
63_N	67_A	1.007	0.77
108_G	148_I	1.004	0.77
170_D	173_L	1.004	0.77
220_V	224_E	1.003	0.77
82_D	136_N	1.000	0.76
195_N	210_S	0.991	0.76
276_D	311_L	0.987	0.76
155_E	161_E	0.987	0.76
171_A	175_F	0.981	0.75
242_L	267_I	0.974	0.75
285_K	314_V	0.972	0.74
110_Q	151_K	0.971	0.74
28_T	31_D	0.969	0.74
186_S	270_T	0.965	0.74
205_G	256_F	0.960	0.73
114_C	125_Q	0.958	0.73
75_V	80_V	0.952	0.73
71_N	76_V	0.951	0.73
246_D	249_G	0.950	0.73
33_A	36_L	0.946	0.72
249_G	257_S	0.946	0.72
103_P	297_W	0.945	0.72
275_W	314_V	0.943	0.72
112_F	115_R	0.941	0.72
220_V	225_F	0.936	0.72
145_I	171_A	0.934	0.71
130_G	280_L	0.932	0.71
150_R	187_K	0.923	0.70
128_V	141_V	0.918	0.70
96_K	109_A	0.916	0.70
75_V	79_L	0.911	0.69
94_D	126_L	0.910	0.69
241_L	254_Y	0.910	0.69
188_V	270_T	0.908	0.69
108_G	288_G	0.906	0.69
125_Q	168_K	0.903	0.69
88_I	188_V	0.902	0.69
129_I	187_K	0.900	0.69
57_Y	61_L	0.898	0.68
32_V	35_R	0.896	0.68
29_R	67_A	0.892	0.68
181_G	215_E	0.891	0.68
25_M	29_R	0.887	0.67
101_A	129_I	0.886	0.67
153_E	156_L	0.883	0.67
211_A	254_Y	0.878	0.67
167_T	170_D	0.877	0.67
91_D	277_I	0.874	0.66
159_R	163_V	0.870	0.66
91_D	281_I	0.869	0.66
274_R	281_I	0.869	0.66
40_A	306_L	0.869	0.66
71_N	75_V	0.865	0.65
139_I	276_D	0.863	0.65
141_V	311_L	0.861	0.65
103_P	124_I	0.860	0.65
189_F	194_V	0.859	0.65
223_S	232_V	0.859	0.65
127_L	171_A	0.859	0.65
114_C	117_H	0.858	0.65
141_V	312_L	0.856	0.65
226_P	229_E	0.856	0.65
34_K	38_L	0.856	0.65
139_I	280_L	0.855	0.65
147_Y	168_K	0.854	0.64
277_I	285_K	0.853	0.64
126_L	304_V	0.852	0.64
112_F	124_I	0.847	0.64
111_I	122_S	0.844	0.64
58_E	62_N	0.835	0.63
102_M	146_A	0.834	0.63
281_I	285_K	0.833	0.62
126_L	300_N	0.832	0.62
92_T	275_W	0.831	0.62
90_D	168_K	0.831	0.62
166_K	177_S	0.829	0.62
221_P	233_E	0.828	0.62
255_F	268_I	0.827	0.62
225_F	228_G	0.827	0.62
36_L	40_A	0.826	0.62
255_F	271_W	0.825	0.62
127_L	172_L	0.825	0.62
141_V	280_L	0.821	0.61
39_G	60_V	0.815	0.61
168_K	192_W	0.815	0.61
189_F	192_W	0.812	0.60
92_T	274_R	0.811	0.60
127_L	168_K	0.810	0.60
18_V	34_K	0.808	0.60
40_A	45_N	0.806	0.60
221_P	229_E	0.805	0.60
102_M	292_G	0.801	0.59
26_T	29_R	0.799	0.59
26_T	32_V	0.798	0.59
129_I	176_L	0.795	0.59
17_A	21_V	0.795	0.59
152_V	158_R	0.793	0.59
98_Y	109_A	0.793	0.59
77_K	182_L	0.789	0.58
127_L	145_I	0.787	0.58
193_Y	278_E	0.787	0.58
71_N	77_K	0.787	0.58
170_D	234_Y	0.780	0.57
21_V	27_G	0.774	0.57
93_H	120_F	0.774	0.57
124_I	300_N	0.773	0.57
21_V	25_M	0.770	0.56
20_E	24_S	0.768	0.56
124_I	148_I	0.767	0.56
37_L	309_L	0.758	0.55
94_D	128_V	0.757	0.55
28_T	36_L	0.754	0.55
27_G	31_D	0.751	0.55
96_K	102_M	0.747	0.54
94_D	304_V	0.742	0.54
132_K	273_N	0.742	0.54
87_L	184_V	0.742	0.54
23_L	30_K	0.742	0.54
299_R	303_F	0.741	0.54
48_E	293_S	0.738	0.53
117_H	121_E	0.731	0.53
115_R	121_E	0.731	0.53
90_D	193_Y	0.726	0.52
281_I	284_L	0.726	0.52
70_V	310_S	0.722	0.52
18_V	21_V	0.722	0.52
207_L	211_A	0.720	0.51
21_V	34_K	0.715	0.51
156_L	162_E	0.711	0.51
17_A	20_E	0.711	0.51
114_C	120_F	0.711	0.51
127_L	147_Y	0.707	0.50
271_W	274_R	0.703	0.50
111_I	253_R	0.703	0.50
17_A	31_D	0.701	0.50
207_L	256_F	0.701	0.50
142_I	179_L	0.698	0.49
122_S	149_P	0.696	0.49
44_R	280_L	0.695	0.49
64_L	302_G	0.695	0.49
200_Q	205_G	0.693	0.49
131_V	189_F	0.692	0.49
36_L	46_A	0.689	0.48
69_Q	305_A	0.687	0.48
98_Y	295_L	0.682	0.48
40_A	284_L	0.682	0.48
114_C	275_W	0.682	0.48
76_V	80_V	0.680	0.47
92_T	285_K	0.678	0.47
92_T	304_V	0.675	0.47
127_L	274_R	0.672	0.47
44_R	288_G	0.669	0.46
161_E	164_K	0.667	0.46
277_I	287_L	0.667	0.46
102_M	126_L	0.665	0.46
239_I	248_K	0.664	0.46
279_V	282_R	0.661	0.46
154_E	164_K	0.660	0.45
190_D	274_R	0.658	0.45
81_G	207_L	0.658	0.45
289_L	304_V	0.656	0.45
284_L	289_L	0.655	0.45
18_V	33_A	0.651	0.45
192_W	208_K	0.650	0.44
278_E	281_I	0.645	0.44
95_H	114_C	0.644	0.44
32_V	63_N	0.644	0.44
153_E	161_E	0.643	0.44
112_F	121_E	0.643	0.44
123_A	271_W	0.643	0.44
278_E	314_V	0.642	0.44
191_S	207_L	0.640	0.43
224_E	230_Y	0.637	0.43
36_L	293_S	0.636	0.43
257_S	293_S	0.636	0.43
103_P	301_S	0.635	0.43
116_A	290_E	0.635	0.43
129_I	199_L	0.635	0.43
199_L	313_V	0.633	0.43
45_N	118_K	0.631	0.43
168_K	171_A	0.630	0.43
115_R	120_F	0.627	0.42
248_K	264_A	0.626	0.42
298_V	302_G	0.626	0.42
193_Y	275_W	0.626	0.42
74_E	210_S	0.622	0.42
240_K	257_S	0.619	0.41
29_R	296_T	0.618	0.41
93_H	125_Q	0.617	0.41
207_L	278_E	0.615	0.41
95_H	121_E	0.614	0.41
275_W	281_I	0.614	0.41
215_E	218_R	0.611	0.41
135_V	138_Q	0.606	0.40
302_G	305_A	0.604	0.40
208_K	212_R	0.603	0.40
76_V	308_A	0.602	0.40
148_I	152_V	0.598	0.39
252_R	309_L	0.597	0.39
46_A	303_F	0.597	0.39
20_E	178_S	0.595	0.39
240_K	246_D	0.592	0.39
26_T	33_A	0.592	0.39
92_T	289_L	0.591	0.39
111_I	118_K	0.590	0.39
227_Q	233_E	0.590	0.39
282_R	285_K	0.590	0.39
36_L	45_N	0.588	0.38
76_V	79_L	0.585	0.38
192_W	275_W	0.581	0.38
157_K	161_E	0.581	0.38
160_G	266_D	0.579	0.38
239_I	244_I	0.578	0.38
189_F	208_K	0.578	0.38
53_A	307_K	0.577	0.37
97_L	121_E	0.575	0.37
45_N	109_A	0.575	0.37
316_Y	322_G	0.574	0.37
184_V	282_R	0.572	0.37
194_V	266_D	0.570	0.37
44_R	50_A	0.569	0.37
257_S	267_I	0.569	0.37
222_V	225_F	0.565	0.36
120_F	308_A	0.564	0.36
19_N	27_G	0.563	0.36
21_V	182_L	0.563	0.36
73_I	76_V	0.563	0.36
102_M	293_S	0.560	0.36
223_S	230_Y	0.559	0.36
288_G	291_G	0.559	0.36
145_I	166_K	0.557	0.36
95_H	116_A	0.557	0.36
196_S	290_E	0.556	0.35
72_L	77_K	0.555	0.35
69_Q	98_Y	0.555	0.35
225_F	229_E	0.554	0.35
154_E	162_E	0.554	0.35
98_Y	108_G	0.553	0.35
301_S	305_A	0.553	0.35
31_D	236_G	0.552	0.35
48_E	52_E	0.548	0.35
168_K	191_S	0.548	0.35
67_A	302_G	0.546	0.35
300_N	307_K	0.546	0.35
150_R	235_L	0.544	0.34
32_V	62_N	0.543	0.34
102_M	300_N	0.542	0.34
29_R	33_A	0.541	0.34
49_I	249_G	0.541	0.34
225_F	233_E	0.541	0.34
112_F	125_Q	0.541	0.34
73_I	77_K	0.541	0.34
29_R	32_V	0.540	0.34
68_A	302_G	0.540	0.34
25_M	30_K	0.539	0.34
94_D	303_F	0.539	0.34
46_A	291_G	0.537	0.34
18_V	37_L	0.536	0.34
74_E	78_K	0.534	0.34
111_I	120_F	0.533	0.33
36_L	299_R	0.532	0.33
227_Q	231_L	0.532	0.33
98_Y	102_M	0.531	0.33
91_D	191_S	0.529	0.33
111_I	121_E	0.527	0.33
223_S	231_L	0.526	0.33
57_Y	275_W	0.526	0.33
112_F	149_P	0.525	0.33
245_D	251_G	0.525	0.33
19_N	34_K	0.524	0.33
18_V	22_I	0.524	0.33
98_Y	283_E	0.524	0.33
29_R	68_A	0.523	0.33
260_L	263_T	0.523	0.33
67_A	148_I	0.523	0.33
242_L	265_E	0.522	0.32
66_K	248_K	0.521	0.32
100_R	176_L	0.521	0.32
27_G	313_V	0.519	0.32
164_K	234_Y	0.519	0.32
102_M	118_K	0.517	0.32
300_N	304_V	0.516	0.32
295_L	310_S	0.512	0.32
123_A	203_T	0.512	0.32
179_L	182_L	0.511	0.31
90_D	190_D	0.511	0.31
58_E	292_G	0.511	0.31
62_N	67_A	0.509	0.31
299_R	306_L	0.508	0.31
114_C	123_A	0.507	0.31
266_D	269_T	0.506	0.31
168_K	274_R	0.505	0.31
17_A	313_V	0.505	0.31
124_I	303_F	0.503	0.31
225_F	232_V	0.503	0.31
48_E	257_S	0.503	0.31
33_A	300_N	0.502	0.31
177_S	213_V	0.502	0.31
210_S	250_Y	0.501	0.31
283_E	286_A	0.500	0.31

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1musA	2	0.9322	99.9	0.719	Contact Map
3hdeA	2	0.2712	21.5	0.964	Contact Map
2kkoA	2	0.3023	18.7	0.965	Contact Map
3hdfA	1	0.2684	15	0.967	Contact Map
1xjuA	2	0.2966	12.4	0.968	Contact Map
2zkzA	2	0.2514	12.3	0.968	Contact Map
3mzyA	1	0.2119	11.2	0.969	Contact Map
1xjtA	1	0.2966	11	0.969	Contact Map
3frwA	2	0.2316	10.3	0.969	Contact Map
3rqiA	2	0.1723	8.5	0.97	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0102 seconds.