Q97XQ8 - SULSO - GREMLIN Contacts

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Q97XQ8 - Transposase ISC1316

UniProt:	Q97XQ8	Sequences: MPTLGFRFRAYTDEQTLRALKAQLKLACEVYNTLRWADIYFYQRDGKGLTQTELRQLALDLRKQDDKYKQLYSQVVQQIADRYYEAKKRFFEGLARFPKEKKPHKYYSLVYPQYGWKILQVREIRKGSKKKLITLKLSNLGTFKVIVHRDFPLDKVKRVIVKLTRSERIYITFVVDHEFPKLPNTGKVVAIDVGVEKLLVTSDSEYFPNLRPLEKALWKVKHLHRELSRKKFLSNNWFKAKVKLARAYEYLKNLRSNLYMKLGKWFAEHYDVVVMEGIHVKQLIGKSLRSLRRRLSDVAFSELRDLIKYQLEKYGKKLILVNPAYTSKTCAKCGYVKEDLSLSDRVFVCPNCGWIADRDYNASLNILRGSGSERSLVPVELRPLPVLWHGRAVKQEAPSLGGGSSPYR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	408 (354)
Sequences:	4517 (2893)
Seq/√Len:	153.8

ECOLI - INSQ
HALSA - Q9HSW9 Q9HHJ9 Q9HM87 Q9HHG8 Q9HSW7 Q9HSD4 Q9HSZ6 Q9HHU6 Q9HSY4 Q9HHX8
SULSO - Q97XQ8 Q97YI2 Q97V47 Q97V25 Q97Y44 Q97XP1 Q97YW4 Q97V53 Q97XA4 Q97YU1 Q97U51 Q97YI5 Q97U68 Q97XQ0 Q97Y48 Q97XB6 Q97Z61 Q97UQ8 Q97Y67 Q97YW9 Q97WY6 Q97X39 Q97WZ3 Q7LXD9 Q7LXH2 Q7LXH6 Q97YF7 Q97U09 Q7LX59 Q7LX75 Q97YK6 Y2105

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
257_N	261_K	5.355	1.00
279_H	282_Q	4.231	1.00
331_A	361_N	4.134	1.00
311_L	318_L	3.583	1.00
274_V	370_S	2.953	1.00
198_L	303_L	2.946	1.00
304_R	320_L	2.871	1.00
275_M	307_I	2.803	1.00
302_E	306_L	2.713	1.00
264_K	268_E	2.628	1.00
341_S	344_D	2.579	1.00
159_V	171_I	2.546	1.00
284_I	296_S	2.536	1.00
217_L	293_R	2.417	1.00
302_E	305_D	2.392	1.00
329_T	336_V	2.379	1.00
308_K	320_L	2.288	1.00
303_L	307_I	2.272	1.00
325_Y	328_K	2.259	1.00
267_A	311_L	2.232	1.00
321_V	366_I	2.219	1.00
369_G	372_S	2.187	1.00
223_L	240_A	2.117	1.00
348_V	355_I	2.106	1.00
157_K	176_D	2.073	1.00
275_M	318_L	2.070	1.00
260_M	309_Y	2.061	1.00
273_V	311_L	2.056	1.00
289_R	292_R	2.047	1.00
333_C	352_C	2.042	1.00
330_C	333_C	2.018	1.00
326_T	366_I	2.011	1.00
216_A	254_L	1.986	1.00
13_D	16_T	1.977	1.00
328_K	340_L	1.964	1.00
39_I	97_F	1.942	1.00
260_M	306_L	1.931	1.00
256_S	302_E	1.907	1.00
51_Q	55_R	1.901	1.00
198_L	258_L	1.899	1.00
52_T	55_R	1.891	1.00
345_R	358_R	1.874	1.00
263_G	306_L	1.873	1.00
240_A	244_L	1.852	1.00
36_W	40_Y	1.820	1.00
34_L	80_A	1.813	1.00
333_C	349_C	1.809	1.00
330_C	352_C	1.804	1.00
135_L	171_I	1.787	1.00
349_C	352_C	1.783	1.00
259_Y	306_L	1.764	1.00
271_D	316_K	1.764	1.00
260_M	263_G	1.760	1.00
308_K	312_E	1.746	1.00
332_K	354_W	1.737	1.00
235_N	238_F	1.734	1.00
22_A	70_Q	1.725	1.00
260_M	310_Q	1.691	1.00
347_F	356_A	1.682	1.00
35_R	83_Y	1.672	1.00
21_K	169_I	1.653	1.00
330_C	349_C	1.651	1.00
275_M	320_L	1.631	1.00
9_R	168_R	1.614	1.00
230_K	240_A	1.584	1.00
191_I	199_L	1.578	1.00
51_Q	81_D	1.574	1.00
227_L	241_K	1.558	1.00
20_L	169_I	1.552	1.00
226_E	230_K	1.538	1.00
29_E	67_K	1.534	1.00
277_G	320_L	1.532	1.00
337_K	347_F	1.521	1.00
238_F	241_K	1.521	1.00
82_R	110_V	1.500	1.00
259_Y	302_E	1.490	1.00
89_R	95_A	1.489	1.00
275_M	304_R	1.487	1.00
74_Q	113_Q	1.479	1.00
52_T	56_Q	1.468	1.00
346_V	355_I	1.463	1.00
347_F	354_W	1.461	1.00
188_V	367_L	1.459	1.00
201_T	205_E	1.458	1.00
17_L	21_K	1.450	1.00
74_Q	112_P	1.449	1.00
337_K	340_L	1.445	1.00
18_R	22_A	1.437	1.00
263_G	309_Y	1.434	1.00
340_L	344_D	1.430	1.00
233_L	237_W	1.416	1.00
84_Y	88_K	1.391	1.00
200_V	360_Y	1.376	1.00
364_L	368_R	1.374	1.00
308_K	318_L	1.369	1.00
189_V	201_T	1.364	1.00
223_L	226_E	1.357	1.00
263_G	310_Q	1.344	1.00
342_L	345_R	1.335	1.00
24_L	169_I	1.329	1.00
34_L	83_Y	1.312	1.00
276_E	323_P	1.310	1.00
197_K	200_V	1.308	1.00
5_G	172_T	1.299	1.00
249_E	253_N	1.296	1.00
335_Y	350_P	1.288	1.00
263_G	303_L	1.266	1.00
168_R	249_E	1.262	1.00
39_I	43_Q	1.259	1.00
220_V	244_L	1.246	1.00
216_A	251_L	1.243	1.00
166_S	249_E	1.242	1.00
14_E	17_L	1.228	1.00
295_L	300_F	1.225	1.00
331_A	364_L	1.222	1.00
164_T	167_E	1.202	1.00
55_R	81_D	1.201	1.00
267_A	314_Y	1.200	1.00
88_K	92_E	1.191	1.00
59_L	62_R	1.189	1.00
134_T	142_T	1.188	1.00
85_E	89_R	1.187	1.00
87_K	97_F	1.184	1.00
219_K	223_L	1.184	1.00
189_V	270_Y	1.178	1.00
328_K	338_E	1.177	1.00
220_V	248_Y	1.175	1.00
188_V	272_V	1.168	1.00
337_K	350_P	1.156	1.00
51_Q	80_A	1.154	1.00
37_A	57_L	1.154	1.00
224_H	228_S	1.150	1.00
55_R	80_A	1.149	1.00
279_H	323_P	1.147	1.00
227_L	240_A	1.146	1.00
342_L	358_R	1.143	1.00
78_Q	112_P	1.141	1.00
191_I	201_T	1.138	1.00
356_A	364_L	1.138	1.00
12_T	16_T	1.137	1.00
265_W	269_H	1.136	1.00
193_V	300_F	1.134	1.00
223_L	247_A	1.120	1.00
331_A	356_A	1.119	1.00
137_L	161_V	1.118	1.00
40_Y	44_R	1.116	1.00
27_A	79_I	1.113	0.99
78_Q	81_D	1.107	0.99
38_D	54_L	1.102	0.99
256_S	306_L	1.101	0.99
227_L	244_L	1.100	0.99
263_G	307_I	1.096	0.99
321_V	369_G	1.086	0.99
50_T	53_E	1.080	0.99
264_K	314_Y	1.079	0.99
328_K	336_V	1.079	0.99
58_A	80_A	1.077	0.99
162_K	172_T	1.076	0.99
360_Y	364_L	1.073	0.99
284_I	292_R	1.072	0.99
306_L	309_Y	1.072	0.99
185_T	271_D	1.071	0.99
164_T	168_R	1.053	0.99
310_Q	313_K	1.050	0.99
195_V	298_V	1.038	0.99
326_T	369_G	1.037	0.99
51_Q	54_L	1.037	0.99
259_Y	303_L	1.032	0.99
72_Y	75_V	1.029	0.99
267_A	316_K	1.028	0.99
341_S	345_R	1.027	0.99
280_V	301_S	1.021	0.99
56_Q	59_L	1.019	0.99
58_A	77_Q	1.007	0.99
62_R	76_V	0.998	0.99
12_T	20_L	0.993	0.99
267_A	273_V	0.990	0.99
224_H	244_L	0.988	0.99
190_A	367_L	0.986	0.99
341_S	358_R	0.982	0.99
136_K	142_T	0.982	0.99
259_Y	263_G	0.978	0.99
68_Y	76_V	0.977	0.99
345_R	357_D	0.970	0.99
193_V	304_R	0.969	0.99
206_Y	357_D	0.968	0.99
31_Y	79_I	0.966	0.99
223_L	244_L	0.965	0.99
274_V	366_I	0.964	0.99
329_T	369_G	0.959	0.98
197_K	208_P	0.957	0.98
59_L	63_K	0.955	0.98
6_F	175_V	0.954	0.98
331_A	362_A	0.954	0.98
110_V	158_R	0.950	0.98
356_A	360_Y	0.949	0.98
335_Y	351_N	0.948	0.98
89_R	92_E	0.944	0.98
305_D	308_K	0.940	0.98
117_K	120_Q	0.939	0.98
331_A	354_W	0.938	0.98
340_L	347_F	0.937	0.98
344_D	358_R	0.936	0.98
268_E	314_Y	0.933	0.98
35_R	87_K	0.929	0.98
197_K	206_Y	0.925	0.98
277_G	323_P	0.925	0.98
90_F	97_F	0.924	0.98
321_V	370_S	0.923	0.98
237_W	241_K	0.922	0.98
29_E	33_T	0.921	0.98
89_R	94_L	0.921	0.98
25_K	28_C	0.920	0.98
82_R	160_I	0.910	0.98
221_K	224_H	0.906	0.98
147_V	150_D	0.903	0.98
346_V	356_A	0.902	0.98
164_T	249_E	0.902	0.98
337_K	341_S	0.901	0.98
111_Y	114_Y	0.900	0.98
291_L	295_L	0.896	0.98
188_V	371_G	0.895	0.98
60_D	64_Q	0.895	0.98
205_E	265_W	0.891	0.98
188_V	274_V	0.891	0.98
74_Q	78_Q	0.890	0.98
115_G	138_S	0.887	0.97
26_L	67_K	0.887	0.97
77_Q	81_D	0.886	0.97
8_F	171_I	0.883	0.97
250_Y	254_L	0.883	0.97
230_K	236_N	0.881	0.97
369_G	373_E	0.875	0.97
36_W	100_E	0.871	0.97
220_V	251_L	0.871	0.97
189_V	202_S	0.871	0.97
252_K	256_S	0.870	0.97
31_Y	86_A	0.868	0.97
360_Y	363_S	0.868	0.97
259_Y	299_A	0.867	0.97
90_F	98_P	0.867	0.97
33_T	37_A	0.865	0.97
328_K	339_D	0.865	0.97
74_Q	114_Y	0.859	0.97
195_V	284_I	0.856	0.97
110_V	160_I	0.855	0.97
311_L	316_K	0.854	0.97
272_V	317_K	0.852	0.97
220_V	228_S	0.850	0.97
116_W	120_Q	0.850	0.97
227_L	237_W	0.849	0.97
41_F	45_D	0.846	0.97
247_A	251_L	0.843	0.97
323_P	326_T	0.837	0.96
228_S	244_L	0.837	0.96
212_P	254_L	0.836	0.96
42_Y	87_K	0.835	0.96
266_F	273_V	0.833	0.96
31_Y	83_Y	0.832	0.96
42_Y	46_G	0.832	0.96
187_K	203_D	0.828	0.96
117_K	136_K	0.828	0.96
39_I	87_K	0.826	0.96
78_Q	110_V	0.824	0.96
200_V	207_F	0.823	0.96
222_H	226_E	0.823	0.96
362_A	365_N	0.823	0.96
224_H	248_Y	0.818	0.96
207_F	262_L	0.817	0.96
344_D	347_F	0.816	0.96
364_L	367_L	0.815	0.96
347_F	358_R	0.814	0.96
17_L	169_I	0.814	0.96
23_Q	27_A	0.813	0.96
264_K	310_Q	0.813	0.96
329_T	365_N	0.810	0.96
45_D	48_G	0.809	0.96
223_L	243_K	0.808	0.96
332_K	364_L	0.805	0.96
34_L	54_L	0.805	0.96
331_A	368_R	0.804	0.96
187_K	271_D	0.803	0.95
212_P	216_A	0.799	0.95
272_V	319_I	0.796	0.95
111_Y	137_L	0.794	0.95
40_Y	43_Q	0.794	0.95
216_A	220_V	0.793	0.95
200_V	206_Y	0.792	0.95
160_I	172_T	0.791	0.95
34_L	58_A	0.789	0.95
262_L	265_W	0.787	0.95
25_K	29_E	0.785	0.95
243_K	246_R	0.782	0.95
193_V	199_L	0.779	0.95
71_L	74_Q	0.775	0.95
301_S	305_D	0.773	0.94
30_V	79_I	0.772	0.94
120_Q	133_I	0.768	0.94
289_R	296_S	0.765	0.94
104_H	107_Y	0.762	0.94
258_L	262_L	0.761	0.94
189_V	273_V	0.760	0.94
158_R	174_V	0.759	0.94
74_Q	77_Q	0.759	0.94
227_L	230_K	0.756	0.94
38_D	84_Y	0.755	0.94
319_I	370_S	0.752	0.94
26_L	68_Y	0.751	0.94
361_N	365_N	0.749	0.93
213_L	217_L	0.747	0.93
19_A	23_Q	0.746	0.93
325_Y	329_T	0.744	0.93
72_Y	111_Y	0.743	0.93
12_T	143_F	0.741	0.93
340_L	358_R	0.740	0.93
213_L	216_A	0.739	0.93
273_V	307_I	0.736	0.93
137_L	140_L	0.736	0.93
325_Y	369_G	0.735	0.93
199_L	262_L	0.734	0.93
186_G	271_D	0.731	0.93
37_A	54_L	0.730	0.93
87_K	90_F	0.728	0.93
241_K	245_A	0.727	0.92
83_Y	87_K	0.727	0.92
93_G	96_R	0.727	0.92
78_Q	82_R	0.726	0.92
278_I	323_P	0.726	0.92
274_V	319_I	0.726	0.92
195_V	294_R	0.724	0.92
26_L	71_L	0.723	0.92
10_A	171_I	0.722	0.92
74_Q	115_G	0.718	0.92
135_L	138_S	0.713	0.92
38_D	87_K	0.712	0.92
75_V	109_L	0.712	0.92
196_E	200_V	0.712	0.92
277_G	304_R	0.709	0.92
282_Q	323_P	0.709	0.92
268_E	272_V	0.709	0.92
233_L	238_F	0.706	0.91
370_S	374_R	0.705	0.91
119_L	136_K	0.702	0.91
182_L	185_T	0.702	0.91
21_K	164_T	0.700	0.91
220_V	224_H	0.699	0.91
161_V	171_I	0.698	0.91
80_A	84_Y	0.698	0.91
155_K	176_D	0.697	0.91
87_K	91_F	0.697	0.91
184_N	187_K	0.695	0.91
340_L	345_R	0.695	0.91
47_K	50_T	0.695	0.91
8_F	149_R	0.691	0.90
209_N	212_P	0.687	0.90
54_L	57_L	0.687	0.90
226_E	229_R	0.685	0.90
137_L	143_F	0.683	0.90
9_R	170_Y	0.681	0.90
199_L	303_L	0.677	0.90
22_A	26_L	0.677	0.90
207_F	258_L	0.674	0.89
20_L	24_L	0.672	0.89
221_K	225_R	0.672	0.89
339_D	344_D	0.671	0.89
73_S	115_G	0.670	0.89
115_G	118_I	0.669	0.89
329_T	338_E	0.667	0.89
274_V	367_L	0.667	0.89
266_F	270_Y	0.666	0.89
37_A	61_L	0.665	0.89
5_G	174_V	0.664	0.89
248_Y	255_R	0.664	0.89
216_A	247_A	0.661	0.88
199_L	207_F	0.657	0.88
251_L	297_D	0.657	0.88
236_N	239_K	0.652	0.88
26_L	29_E	0.651	0.88
109_L	113_Q	0.650	0.88
48_G	54_L	0.650	0.88
202_S	360_Y	0.648	0.87
311_L	314_Y	0.646	0.87
140_L	143_F	0.646	0.87
135_L	159_V	0.644	0.87
230_K	234_S	0.643	0.87
41_F	49_L	0.640	0.87
366_I	369_G	0.640	0.87
325_Y	336_V	0.639	0.87
62_R	65_D	0.638	0.87
179_F	312_E	0.638	0.87
255_R	297_D	0.638	0.87
182_L	316_K	0.637	0.87
234_S	237_W	0.637	0.87
309_Y	313_K	0.635	0.86
81_D	112_P	0.635	0.86
307_I	318_L	0.634	0.86
280_V	300_F	0.633	0.86
198_L	298_V	0.633	0.86
221_K	228_S	0.632	0.86
51_Q	56_Q	0.631	0.86
137_L	159_V	0.629	0.86
209_N	298_V	0.627	0.86
73_S	112_P	0.627	0.86
226_E	240_A	0.625	0.85
79_I	83_Y	0.623	0.85
7_R	162_K	0.620	0.85
203_D	270_Y	0.619	0.85
337_K	344_D	0.617	0.85
43_Q	46_G	0.616	0.85
145_V	150_D	0.614	0.84
253_N	256_S	0.612	0.84
14_E	18_R	0.611	0.84
356_A	361_N	0.611	0.84
342_L	357_D	0.611	0.84
114_Y	117_K	0.611	0.84
12_T	17_L	0.609	0.84
15_Q	18_R	0.606	0.84
274_V	369_G	0.605	0.84
256_S	260_M	0.605	0.84
214_E	293_R	0.605	0.84
38_D	45_D	0.604	0.83
59_L	80_A	0.603	0.83
53_E	56_Q	0.602	0.83
332_K	356_A	0.601	0.83
214_E	294_R	0.598	0.83
216_A	250_Y	0.597	0.83
33_T	67_K	0.595	0.83
248_Y	252_K	0.594	0.82
207_F	265_W	0.594	0.82
226_E	243_K	0.593	0.82
342_L	346_V	0.593	0.82
368_R	373_E	0.592	0.82
132_L	138_S	0.591	0.82
19_A	22_A	0.591	0.82
72_Y	113_Q	0.590	0.82
15_Q	19_A	0.590	0.82
47_K	53_E	0.586	0.82
337_K	358_R	0.586	0.82
71_L	76_V	0.585	0.82
33_T	61_L	0.585	0.82
7_R	256_S	0.584	0.81
187_K	270_Y	0.583	0.81
23_Q	71_L	0.582	0.81
36_W	39_I	0.581	0.81
57_L	61_L	0.581	0.81
198_L	263_G	0.580	0.81
328_K	337_K	0.578	0.81
6_F	149_R	0.576	0.81
111_Y	115_G	0.575	0.80
24_L	109_L	0.573	0.80
282_Q	291_L	0.572	0.80
11_Y	146_I	0.571	0.80
270_Y	273_V	0.569	0.80
145_V	148_H	0.568	0.80
283_L	295_L	0.568	0.80
23_Q	111_Y	0.567	0.79
231_K	234_S	0.565	0.79
322_N	325_Y	0.564	0.79
284_I	289_R	0.564	0.79
335_Y	339_D	0.563	0.79
206_Y	360_Y	0.562	0.79
108_S	160_I	0.562	0.79
202_S	206_Y	0.562	0.79
292_R	296_S	0.560	0.79
37_A	41_F	0.559	0.79
304_R	308_K	0.559	0.79
190_A	274_V	0.559	0.79
80_A	83_Y	0.557	0.78
198_L	259_Y	0.557	0.78
253_N	257_N	0.555	0.78
22_A	71_L	0.555	0.78
134_T	137_L	0.555	0.78
53_E	57_L	0.554	0.78
348_V	354_W	0.554	0.78
92_E	95_A	0.554	0.78
193_V	280_V	0.553	0.78
168_R	253_N	0.553	0.78
116_W	156_V	0.552	0.78
37_A	40_Y	0.551	0.78
225_R	229_R	0.550	0.77
232_F	237_W	0.549	0.77
284_I	295_L	0.548	0.77
192_D	359_D	0.547	0.77
194_G	200_V	0.547	0.77
368_R	371_G	0.546	0.77
282_Q	295_L	0.546	0.77
371_G	374_R	0.543	0.77
262_L	303_L	0.542	0.76
214_E	217_L	0.542	0.76
284_I	290_S	0.542	0.76
20_L	109_L	0.541	0.76
306_L	310_Q	0.541	0.76
196_E	345_R	0.540	0.76
221_K	289_R	0.539	0.76
75_V	111_Y	0.539	0.76
136_K	140_L	0.536	0.76
237_W	240_A	0.532	0.75
329_T	347_F	0.531	0.75
38_D	48_G	0.530	0.75
212_P	297_D	0.530	0.75
225_R	228_S	0.529	0.75
23_Q	109_L	0.528	0.75
112_P	116_W	0.527	0.74
7_R	172_T	0.527	0.74
5_G	162_K	0.525	0.74
23_Q	72_Y	0.525	0.74
194_G	197_K	0.525	0.74
274_V	371_G	0.523	0.74
111_Y	116_W	0.523	0.74
367_L	371_G	0.522	0.74
55_R	58_A	0.522	0.74
42_Y	91_F	0.522	0.74
196_E	357_D	0.521	0.74
214_E	218_W	0.521	0.74
38_D	41_F	0.520	0.73
261_K	264_K	0.520	0.73
198_L	307_I	0.519	0.73
41_F	47_K	0.518	0.73
164_T	169_I	0.518	0.73
55_R	59_L	0.516	0.73
76_V	79_I	0.515	0.73
190_A	202_S	0.514	0.73
133_I	147_V	0.514	0.73
22_A	25_K	0.513	0.72
299_A	302_E	0.512	0.72
72_Y	140_L	0.509	0.72
10_A	145_V	0.508	0.72
294_R	298_V	0.504	0.71
291_L	294_R	0.503	0.71
7_R	170_Y	0.502	0.71
72_Y	112_P	0.500	0.71

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1vhxA	2	0.3358	93.8	0.935	Contact Map
1nu0A	1	0.3186	93.3	0.936	Contact Map
4aybP	1	0.1054	88	0.944	Contact Map
1iv0A	1	0.2377	86.4	0.945	Contact Map
1vq8Z	1	0.1618	86	0.945	Contact Map
1ffkW	1	0.1642	85.2	0.946	Contact Map
3j20Y	1	0.1225	83.9	0.947	Contact Map
1qypA	1	0.1127	82.5	0.948	Contact Map
1vd4A	1	0.1373	81.2	0.948	Contact Map
2k4xA	1	0.1348	81	0.949	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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