Q97XQ4 - SULSO - GREMLIN Contacts

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Q97XQ4 - Uncharacterized protein

UniProt:	Q97XQ4	Sequences: MKRGWLFDFGKNIREEIDDGRASRGREYVRNGAVRKIEINPGKIAAQVSGTKLYDVNIYGNTLSEEDKRKVINIINKKGYLSSLLSYKFPTSIIDDLDEEGIELIPRNLSYECTCPDYQRPCKHIYAVYLTAYDIISNNPLLLFKFLGINKEELIYEKGQKIMQEISVKDFQRKYEFPSIKFVNAKPWNKFGNDKEVVKHMYMLIMKTAERKIDELK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	217 (172)
Sequences:	619 (383)
Seq/√Len:	29.2

SULSO - Q97XQ4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
25_G	126_Y	5.066	1.00
28_Y	123_K	3.447	1.00
24_R	50_G	3.117	1.00
21_R	117_D	3.000	1.00
117_D	123_K	2.934	1.00
28_Y	116_P	2.910	1.00
24_R	123_K	2.652	1.00
44_I	132_A	2.584	0.99
150_N	153_E	2.581	0.99
3_R	6_L	2.453	0.99
50_G	116_P	2.390	0.99
50_G	123_K	2.359	0.99
54_Y	123_K	2.342	0.99
20_G	23_S	2.222	0.98
61_N	110_S	2.192	0.98
89_F	93_I	2.055	0.97
116_P	123_K	2.042	0.97
65_E	149_I	2.005	0.97
64_S	67_D	1.926	0.96
56_V	128_V	1.916	0.96
49_S	53_L	1.891	0.96
21_R	123_K	1.880	0.95
63_L	102_I	1.853	0.95
53_L	116_P	1.828	0.95
9_F	146_F	1.826	0.95
83_S	88_K	1.818	0.94
50_G	53_L	1.763	0.93
168_V	171_F	1.726	0.93
20_G	119_Q	1.722	0.93
68_K	149_I	1.708	0.92
14_R	130_L	1.670	0.91
136_I	143_L	1.657	0.91
9_F	133_Y	1.603	0.90
111_Y	145_K	1.595	0.89
24_R	28_Y	1.591	0.89
16_E	131_T	1.545	0.88
21_R	24_R	1.524	0.87
46_A	128_V	1.524	0.87
54_Y	116_P	1.524	0.87
50_G	54_Y	1.522	0.87
6_L	81_L	1.498	0.86
32_G	127_A	1.458	0.85
68_K	136_I	1.439	0.84
4_G	90_P	1.421	0.83
43_K	57_N	1.374	0.81
90_P	97_L	1.368	0.81
28_Y	117_D	1.352	0.80
94_I	97_L	1.311	0.78
111_Y	120_R	1.308	0.78
10_G	14_R	1.304	0.77
73_N	161_K	1.294	0.77
12_N	16_E	1.285	0.76
51_T	123_K	1.280	0.76
8_D	71_V	1.266	0.75
21_R	116_P	1.261	0.75
28_Y	54_Y	1.255	0.74
21_R	50_G	1.252	0.74
3_R	137_S	1.250	0.74
139_N	151_K	1.236	0.73
159_G	162_I	1.234	0.73
51_T	116_P	1.221	0.72
71_V	97_L	1.194	0.71
14_R	26_R	1.164	0.69
46_A	85_L	1.163	0.69
21_R	54_Y	1.162	0.69
65_E	157_E	1.153	0.68
83_S	131_T	1.153	0.68
54_Y	114_T	1.150	0.68
115_C	124_H	1.132	0.67
13_I	126_Y	1.129	0.66
154_L	157_E	1.107	0.65
20_G	27_E	1.106	0.65
105_I	129_Y	1.095	0.64
157_E	160_Q	1.085	0.63
6_L	137_S	1.062	0.61
12_N	17_I	1.057	0.61
115_C	122_C	1.046	0.60
6_L	9_F	1.044	0.60
166_I	169_K	1.035	0.59
28_Y	50_G	1.032	0.59
7_F	76_N	1.011	0.58
33_A	51_T	1.004	0.57
15_E	99_E	1.001	0.57
68_K	85_L	0.995	0.56
156_Y	171_F	0.991	0.56
34_V	56_V	0.990	0.56
6_L	12_N	0.987	0.56
24_R	116_P	0.986	0.56
51_T	117_D	0.985	0.56
6_L	18_D	0.973	0.55
61_N	155_I	0.970	0.54
23_S	27_E	0.970	0.54
71_V	94_I	0.970	0.54
132_A	159_G	0.968	0.54
24_R	117_D	0.942	0.52
75_I	163_M	0.941	0.52
82_S	141_L	0.931	0.51
28_Y	53_L	0.926	0.51
21_R	28_Y	0.919	0.50
50_G	117_D	0.918	0.50
126_Y	130_L	0.914	0.50
28_Y	130_L	0.906	0.49
67_D	99_E	0.901	0.49
169_K	174_K	0.899	0.49
73_N	153_E	0.891	0.48
43_K	160_Q	0.884	0.48
37_I	45_A	0.882	0.48
56_V	119_Q	0.873	0.47
49_S	88_K	0.873	0.47
153_E	157_E	0.855	0.45
24_R	51_T	0.851	0.45
75_I	81_L	0.849	0.45
6_L	83_S	0.849	0.45
93_I	158_K	0.839	0.44
62_T	112_E	0.838	0.44
38_E	47_Q	0.836	0.44
37_I	131_T	0.823	0.43
74_I	99_E	0.818	0.43
3_R	31_N	0.817	0.43
29_V	131_T	0.817	0.43
35_R	49_S	0.811	0.42
37_I	87_Y	0.810	0.42
10_G	131_T	0.810	0.42
56_V	116_P	0.805	0.42
121_P	125_I	0.805	0.42
82_S	90_P	0.794	0.41
4_G	139_N	0.787	0.40
136_I	147_L	0.784	0.40
8_D	103_E	0.777	0.39
33_A	134_D	0.776	0.39
119_Q	144_F	0.773	0.39
105_I	136_I	0.772	0.39
54_Y	117_D	0.771	0.39
29_V	121_P	0.769	0.39
30_R	87_Y	0.762	0.38
41_P	145_K	0.761	0.38
5_W	54_Y	0.755	0.38
4_G	141_L	0.753	0.38
119_Q	135_I	0.749	0.37
34_V	48_V	0.746	0.37
111_Y	125_I	0.745	0.37
73_N	165_E	0.745	0.37
53_L	127_A	0.745	0.37
168_V	173_R	0.741	0.37
76_N	161_K	0.740	0.37
6_L	87_Y	0.735	0.36
27_E	31_N	0.734	0.36
22_A	104_L	0.728	0.36
42_G	63_L	0.726	0.36
133_Y	146_F	0.721	0.35
99_E	165_E	0.714	0.35
13_I	147_L	0.712	0.35
50_G	97_L	0.711	0.35
68_K	158_K	0.706	0.34
85_L	141_L	0.690	0.33
45_A	100_E	0.689	0.33
6_L	14_R	0.688	0.33
170_D	174_K	0.688	0.33
50_G	114_T	0.687	0.33
114_T	123_K	0.686	0.33
8_D	94_I	0.680	0.33
10_G	60_G	0.680	0.33
79_G	89_F	0.678	0.32
26_R	45_A	0.677	0.32
53_L	123_K	0.677	0.32
11_K	28_Y	0.672	0.32
24_R	54_Y	0.671	0.32
42_G	95_D	0.664	0.31
87_Y	151_K	0.664	0.31
49_S	52_K	0.660	0.31
86_S	90_P	0.655	0.31
132_A	163_M	0.655	0.31
10_G	135_I	0.647	0.30
29_V	32_G	0.645	0.30
4_G	82_S	0.643	0.30
116_P	119_Q	0.642	0.30
10_G	133_Y	0.640	0.30
132_A	136_I	0.639	0.30
166_I	172_Q	0.639	0.30
113_C	122_C	0.636	0.30
12_N	107_R	0.634	0.29
113_C	124_H	0.627	0.29
138_N	155_I	0.627	0.29
106_P	130_L	0.625	0.29
120_R	129_Y	0.623	0.29
22_A	130_L	0.620	0.29
36_K	44_I	0.618	0.28
36_K	47_Q	0.617	0.28
68_K	94_I	0.616	0.28
21_R	119_Q	0.614	0.28
5_W	22_A	0.613	0.28
47_Q	153_E	0.605	0.28
109_L	135_I	0.603	0.27
131_T	134_D	0.602	0.27
26_R	161_K	0.601	0.27
64_S	100_E	0.600	0.27
14_R	44_I	0.599	0.27
91_T	99_E	0.596	0.27
13_I	63_L	0.593	0.27
20_G	24_R	0.592	0.27
83_S	94_I	0.590	0.27
75_I	79_G	0.587	0.26
101_G	159_G	0.587	0.26
25_G	58_I	0.586	0.26
90_P	94_I	0.584	0.26
37_I	91_T	0.584	0.26
58_I	129_Y	0.582	0.26
29_V	33_A	0.579	0.26
30_R	51_T	0.578	0.26
40_N	45_A	0.576	0.26
146_F	155_I	0.574	0.26
12_N	19_D	0.573	0.26
34_V	131_T	0.573	0.26
90_P	158_K	0.572	0.26
9_F	105_I	0.572	0.26
44_I	146_F	0.567	0.25
76_N	151_K	0.567	0.25
112_E	173_R	0.562	0.25
61_N	142_L	0.557	0.25
70_K	101_G	0.556	0.25
98_D	103_E	0.554	0.24
21_R	51_T	0.549	0.24
33_A	52_K	0.549	0.24
82_S	139_N	0.547	0.24
171_F	174_K	0.547	0.24
84_L	90_P	0.546	0.24
95_D	99_E	0.544	0.24
164_Q	171_F	0.543	0.24
62_T	65_E	0.542	0.24
69_R	157_E	0.539	0.24
165_E	168_V	0.537	0.24
66_E	100_E	0.536	0.23
71_V	74_I	0.533	0.23
81_L	162_I	0.533	0.23
89_F	97_L	0.531	0.23
12_N	18_D	0.530	0.23
40_N	99_E	0.521	0.23
45_A	69_R	0.521	0.23
26_R	139_N	0.520	0.23
152_E	156_Y	0.519	0.23
11_K	71_V	0.519	0.23
156_Y	166_I	0.518	0.22
44_I	58_I	0.516	0.22
165_E	174_K	0.516	0.22
60_G	132_A	0.515	0.22
45_A	57_N	0.515	0.22
45_A	66_E	0.514	0.22
16_E	20_G	0.513	0.22
89_F	92_S	0.508	0.22
126_Y	137_S	0.507	0.22
42_G	172_Q	0.506	0.22
101_G	158_K	0.506	0.22
16_E	109_L	0.505	0.22
12_N	105_I	0.504	0.22
152_E	160_Q	0.502	0.22
11_K	15_E	0.502	0.22
30_R	86_S	0.500	0.22
82_S	101_G	0.500	0.22

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1w79A	1	0.3779	14.6	0.96	Contact Map
1rjtA	1	0.2719	12.4	0.961	Contact Map
1lv9A	1	0.2304	7.9	0.964	Contact Map
2fo5A	1	0.1889	6.5	0.966	Contact Map
3m0cC	1	0.6774	5.6	0.967	Contact Map
2l74A	1	0.447	5.3	0.967	Contact Map
1rcwA	2	0.5668	5	0.968	Contact Map
1mgsA	2	0.2811	4.9	0.968	Contact Map
4wx0A	2	0.6866	4.1	0.969	Contact Map
1njhA	2	0.4194	4	0.969	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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