Q97XP6 - SULSO - GREMLIN Contacts

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Q97XP6 - Cytosine permease (CodB)

UniProt:	Q97XP6	Sequences: MTGKEEISSKYDDYSLKEVPKDSRYGFFNVFLVFSSVYGAIAVIWAGGALGYGLTFSQAIIAVLSGTVVLGILGSLTAAVGAYSGLSTYVMWRHPLGRWGGKIAGLLLITITTGIGWYAVETWLFGIVMSEIFPNNPFFSVGVAAIWGGILMTIMTYVGYRMLSFLSYFTIPFHIWLIAIGIAIVLALKGGFHTVMAAVPTSHMSLLDGISATIGLYSAGTIISPDISRFAKSAKDAGYAWFAHIIFLYPFLILGGVAIVLATGSYLITNAMLELGMGVGVLLIIVFGQFIINTDNLYSGSLSLVNLIPMRREIASVINGVIGTAIAAYVGFSAGSSITPFENFISLLGDFLPAMGGIVLADFYIVKKYVNKIQDPHKRYEFVPNNKYYNINIAGILALALGSIIGYFVNAGIPAINSLVTGFLSYIIIYYIIKAMGKSPEILPFNYEGGILR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	453 (409)
Sequences:	4783 (3073)
Seq/√Len:	151.9

ECOLI - CODB ALLP
BACSU - ALLP YXLA
SULSO - Q97XP6 Q97WS4 Q97X50

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
361_A	423_F	7.106	1.00
361_A	427_I	5.956	1.00
81_G	225_P	4.459	1.00
401_L	425_S	4.367	1.00
60_I	254_L	4.010	1.00
398_A	425_S	3.479	1.00
365_I	423_F	3.359	1.00
398_A	429_I	3.240	1.00
398_A	402_G	3.192	1.00
402_G	422_G	3.106	1.00
65_S	210_I	3.096	1.00
83_Y	234_A	3.027	1.00
402_G	425_S	2.991	1.00
183_A	187_A	2.966	1.00
62_A	206_L	2.881	1.00
357_G	361_A	2.747	1.00
206_L	210_I	2.739	1.00
362_D	367_K	2.685	1.00
365_I	427_I	2.662	1.00
20_P	23_S	2.596	1.00
405_I	421_T	2.591	1.00
55_T	58_Q	2.560	1.00
375_D	378_K	2.556	1.00
267_L	270_N	2.530	1.00
311_R	314_I	2.400	1.00
396_I	400_A	2.396	1.00
24_R	85_G	2.363	1.00
358_I	399_L	2.352	1.00
393_I	397_L	2.344	1.00
182_I	251_F	2.319	1.00
191_G	194_T	2.265	1.00
293_N	296_N	2.262	1.00
69_V	214_I	2.256	1.00
37_V	295_D	2.187	1.00
179_A	183_A	2.162	1.00
233_S	236_D	2.147	1.00
59_A	257_V	2.094	1.00
416_I	420_V	2.080	1.00
431_Y	434_K	2.045	1.00
14_Y	23_S	2.045	1.00
357_G	419_L	2.039	1.00
103_I	396_I	2.026	1.00
153_T	320_G	2.021	1.00
232_K	236_D	1.997	1.00
406_G	418_S	1.995	1.00
122_T	152_M	1.983	1.00
78_A	228_S	1.978	1.00
143_V	147_W	1.939	1.00
118_Y	293_N	1.925	1.00
235_K	239_Y	1.924	1.00
387_K	390_N	1.923	1.00
99_W	102_K	1.910	1.00
270_N	274_E	1.900	1.00
421_T	425_S	1.814	1.00
125_F	148_G	1.814	1.00
402_G	421_T	1.807	1.00
425_S	429_I	1.797	1.00
150_I	154_I	1.776	1.00
14_Y	17_K	1.764	1.00
158_V	162_M	1.746	1.00
358_I	398_A	1.744	1.00
95_P	362_D	1.738	1.00
80_V	91_M	1.735	1.00
149_G	324_T	1.730	1.00
61_I	206_L	1.726	1.00
118_Y	323_G	1.720	1.00
49_A	59_A	1.700	1.00
94_H	371_N	1.697	1.00
310_M	318_I	1.689	1.00
101_G	306_N	1.670	1.00
117_W	120_V	1.651	1.00
152_M	293_N	1.648	1.00
357_G	422_G	1.645	1.00
116_G	344_F	1.638	1.00
165_F	168_Y	1.614	1.00
56_F	60_I	1.612	1.00
27_F	236_D	1.604	1.00
401_L	421_T	1.580	1.00
310_M	314_I	1.579	1.00
75_S	242_F	1.565	1.00
404_I	408_F	1.559	1.00
423_F	427_I	1.554	1.00
96_L	395_G	1.537	1.00
385_N	390_N	1.528	1.00
271_A	275_L	1.523	1.00
378_K	381_E	1.521	1.00
427_I	431_Y	1.514	1.00
317_V	321_V	1.494	1.00
91_M	225_P	1.482	1.00
130_S	144_A	1.474	1.00
176_W	180_I	1.469	1.00
62_A	209_G	1.465	1.00
397_L	429_I	1.463	1.00
395_G	426_Y	1.459	1.00
26_G	29_N	1.452	1.00
63_V	257_V	1.449	1.00
420_V	423_F	1.448	1.00
424_L	428_I	1.447	1.00
57_S	61_I	1.445	1.00
49_A	209_G	1.439	1.00
391_I	396_I	1.435	1.00
146_I	150_I	1.429	1.00
316_S	320_G	1.427	1.00
29_N	168_Y	1.401	1.00
395_G	398_A	1.396	1.00
119_A	323_G	1.394	1.00
271_A	274_E	1.389	1.00
268_I	271_A	1.387	1.00
63_V	253_I	1.385	1.00
103_I	391_I	1.377	1.00
428_I	431_Y	1.362	1.00
265_S	270_N	1.362	1.00
81_G	228_S	1.360	1.00
72_I	76_L	1.338	1.00
420_V	424_L	1.332	1.00
400_A	404_I	1.327	1.00
182_I	255_G	1.326	1.00
155_M	166_L	1.316	1.00
418_S	422_G	1.311	1.00
354_A	418_S	1.309	1.00
142_G	146_I	1.308	1.00
79_A	234_A	1.308	1.00
358_I	395_G	1.303	1.00
79_A	83_Y	1.303	1.00
127_I	267_L	1.303	1.00
65_S	206_L	1.298	1.00
246_I	250_P	1.297	1.00
360_L	364_Y	1.297	1.00
99_W	390_N	1.293	1.00
300_G	319_N	1.289	1.00
236_D	240_A	1.266	1.00
121_E	296_N	1.258	1.00
409_V	417_N	1.253	1.00
61_I	65_S	1.251	1.00
362_D	366_V	1.250	1.00
114_G	223_I	1.237	1.00
356_G	360_L	1.233	1.00
310_M	315_A	1.232	1.00
64_L	250_P	1.232	1.00
227_I	299_S	1.222	1.00
312_R	316_S	1.211	1.00
54_L	62_A	1.202	1.00
69_V	210_I	1.196	1.00
126_G	144_A	1.193	1.00
230_F	302_L	1.173	1.00
107_L	352_L	1.166	1.00
206_L	209_G	1.162	1.00
195_V	198_A	1.158	1.00
358_I	402_G	1.156	1.00
96_L	100_G	1.154	1.00
357_G	423_F	1.152	1.00
394_A	429_I	1.151	1.00
270_N	273_L	1.138	1.00
388_Y	393_I	1.134	1.00
198_A	261_L	1.133	1.00
413_I	417_N	1.133	1.00
428_I	432_I	1.129	1.00
375_D	384_P	1.108	0.99
12_D	17_K	1.106	0.99
119_A	326_I	1.105	0.99
366_V	427_I	1.104	0.99
156_T	316_S	1.102	0.99
325_A	329_Y	1.102	0.99
14_Y	19_V	1.101	0.99
239_Y	243_A	1.100	0.99
77_T	359_V	1.093	0.99
165_F	169_F	1.086	0.99
180_I	183_A	1.079	0.99
394_A	430_Y	1.078	0.99
116_G	345_I	1.074	0.99
161_R	165_F	1.071	0.99
93_R	101_G	1.065	0.99
35_S	248_L	1.057	0.99
218_S	353_P	1.056	0.99
62_A	66_G	1.054	0.99
394_A	398_A	1.051	0.99
73_L	221_T	1.049	0.99
62_A	210_I	1.046	0.99
305_V	315_A	1.041	0.99
139_F	143_V	1.038	0.99
121_E	293_N	1.030	0.99
71_G	75_S	1.026	0.99
98_R	386_N	1.021	0.99
423_F	426_Y	1.020	0.99
185_V	259_I	1.019	0.99
41_I	289_Q	1.019	0.99
426_Y	430_Y	1.018	0.99
398_A	426_Y	1.010	0.99
255_G	259_I	1.005	0.99
63_V	67_T	1.003	0.99
122_T	149_G	1.000	0.99
132_I	279_V	0.998	0.99
269_T	274_E	0.997	0.99
79_A	364_Y	0.995	0.99
14_Y	20_P	0.991	0.99
63_V	250_P	0.982	0.99
47_G	256_G	0.980	0.99
361_A	366_V	0.976	0.99
225_P	228_S	0.972	0.99
394_A	397_L	0.967	0.99
103_I	400_A	0.965	0.98
398_A	422_G	0.961	0.98
371_N	377_H	0.958	0.98
186_L	258_A	0.958	0.98
99_W	386_N	0.958	0.98
132_I	283_L	0.955	0.98
251_F	255_G	0.953	0.98
79_A	369_Y	0.949	0.98
221_T	356_G	0.948	0.98
106_L	307_L	0.942	0.98
96_L	399_L	0.942	0.98
186_L	190_G	0.941	0.98
403_S	406_G	0.940	0.98
405_I	408_F	0.939	0.98
66_G	213_T	0.937	0.98
398_A	423_F	0.936	0.98
361_A	365_I	0.935	0.98
389_Y	393_I	0.931	0.98
88_T	225_P	0.930	0.98
156_T	320_G	0.930	0.98
424_L	427_I	0.928	0.98
90_V	93_R	0.921	0.98
66_G	210_I	0.917	0.98
80_V	84_S	0.912	0.98
76_L	364_Y	0.911	0.98
180_I	184_I	0.901	0.98
381_E	386_N	0.900	0.98
95_P	359_V	0.898	0.98
118_Y	297_L	0.897	0.98
297_L	320_G	0.894	0.98
191_G	195_V	0.893	0.97
430_Y	433_I	0.893	0.97
207_L	211_S	0.892	0.97
67_T	253_I	0.891	0.97
30_V	228_S	0.891	0.97
244_H	248_L	0.889	0.97
100_G	396_I	0.888	0.97
95_P	358_I	0.888	0.97
131_E	270_N	0.887	0.97
385_N	388_Y	0.886	0.97
39_G	174_H	0.880	0.97
206_L	213_T	0.880	0.97
117_W	345_I	0.874	0.97
250_P	254_L	0.874	0.97
67_T	216_L	0.871	0.97
78_A	237_A	0.867	0.97
133_F	139_F	0.865	0.97
196_M	199_V	0.864	0.97
231_A	234_A	0.860	0.97
68_V	246_I	0.860	0.97
401_L	408_F	0.859	0.97
350_D	410_N	0.858	0.97
155_M	290_F	0.857	0.97
288_G	292_I	0.855	0.97
175_I	179_A	0.855	0.97
107_L	348_L	0.854	0.97
70_L	217_Y	0.848	0.97
412_G	417_N	0.848	0.97
118_Y	320_G	0.841	0.96
172_P	175_I	0.840	0.96
268_I	272_M	0.839	0.96
211_S	416_I	0.836	0.96
44_I	259_I	0.836	0.96
96_L	104_A	0.835	0.96
121_E	289_Q	0.834	0.96
417_N	420_V	0.832	0.96
123_W	126_G	0.831	0.96
229_R	298_Y	0.830	0.96
400_A	403_S	0.830	0.96
298_Y	302_L	0.828	0.96
48_G	124_L	0.827	0.96
393_I	396_I	0.825	0.96
299_S	303_S	0.824	0.96
34_F	89_Y	0.823	0.96
118_Y	121_E	0.823	0.96
89_Y	303_S	0.820	0.96
60_I	64_L	0.820	0.96
20_P	24_R	0.815	0.96
366_V	430_Y	0.814	0.96
58_Q	61_I	0.814	0.96
210_I	214_I	0.814	0.96
78_A	81_G	0.813	0.96
167_S	291_I	0.812	0.96
125_F	289_Q	0.808	0.95
132_I	282_L	0.805	0.95
84_S	371_N	0.799	0.95
386_N	389_Y	0.798	0.95
200_P	203_H	0.797	0.95
386_N	390_N	0.796	0.95
318_I	322_I	0.795	0.95
16_L	90_V	0.792	0.95
397_L	400_A	0.789	0.95
219_A	352_L	0.786	0.95
75_S	238_G	0.786	0.95
212_A	342_E	0.786	0.95
421_T	424_L	0.785	0.95
185_V	255_G	0.784	0.95
43_V	46_A	0.782	0.95
236_D	239_Y	0.782	0.95
288_G	291_I	0.781	0.95
402_G	418_S	0.777	0.94
403_S	408_F	0.774	0.94
192_F	195_V	0.773	0.94
180_I	277_M	0.769	0.94
71_G	289_Q	0.769	0.94
26_G	232_K	0.765	0.94
28_F	32_L	0.765	0.94
82_A	237_A	0.762	0.94
321_V	324_T	0.759	0.94
392_N	430_Y	0.758	0.94
405_I	417_N	0.755	0.94
39_G	292_I	0.754	0.94
38_Y	248_L	0.750	0.93
214_I	419_L	0.746	0.93
93_R	362_D	0.746	0.93
393_I	433_I	0.746	0.93
126_G	130_S	0.745	0.93
37_V	220_G	0.745	0.93
93_R	306_N	0.744	0.93
174_H	292_I	0.744	0.93
122_T	293_N	0.743	0.93
88_T	299_S	0.743	0.93
314_I	317_V	0.742	0.93
123_W	127_I	0.740	0.93
48_G	260_V	0.740	0.93
362_D	430_Y	0.737	0.93
108_L	299_S	0.736	0.93
300_G	303_S	0.734	0.93
276_G	280_G	0.730	0.92
397_L	401_L	0.729	0.92
160_Y	230_F	0.728	0.92
76_L	365_I	0.728	0.92
54_L	58_Q	0.727	0.92
71_G	246_I	0.727	0.92
394_A	433_I	0.725	0.92
93_R	98_R	0.724	0.92
245_I	249_Y	0.724	0.92
29_N	164_S	0.722	0.92
223_I	227_I	0.718	0.92
358_I	366_V	0.716	0.92
41_I	44_I	0.711	0.91
109_I	304_L	0.709	0.91
392_N	395_G	0.707	0.91
185_V	189_K	0.706	0.91
31_F	243_A	0.706	0.91
190_G	195_V	0.704	0.91
92_W	101_G	0.700	0.91
324_T	328_A	0.700	0.91
282_L	291_I	0.699	0.91
214_I	218_S	0.697	0.91
77_T	224_S	0.695	0.90
67_T	249_Y	0.693	0.90
313_E	331_G	0.693	0.90
199_V	203_H	0.693	0.90
179_A	401_L	0.691	0.90
12_D	298_Y	0.688	0.90
99_W	389_Y	0.687	0.90
425_S	428_I	0.687	0.90
174_H	288_G	0.687	0.90
133_F	144_A	0.685	0.90
45_W	48_G	0.685	0.90
105_G	303_S	0.685	0.90
64_L	254_L	0.684	0.90
358_I	422_G	0.684	0.90
119_A	123_W	0.682	0.90
167_S	294_T	0.682	0.90
31_F	35_S	0.681	0.90
312_R	315_A	0.681	0.90
139_F	144_A	0.680	0.89
82_A	231_A	0.679	0.89
56_F	261_L	0.679	0.89
59_A	63_V	0.677	0.89
207_L	210_I	0.675	0.89
92_W	95_P	0.675	0.89
74_G	77_T	0.675	0.89
365_I	368_K	0.674	0.89
80_V	359_V	0.672	0.89
327_A	331_G	0.672	0.89
145_A	328_A	0.672	0.89
38_Y	249_Y	0.670	0.89
301_S	315_A	0.667	0.89
42_A	126_G	0.665	0.88
314_I	329_Y	0.661	0.88
403_S	407_Y	0.660	0.88
194_T	197_A	0.660	0.88
102_K	307_L	0.660	0.88
129_M	144_A	0.658	0.88
172_P	176_W	0.655	0.88
340_P	343_N	0.653	0.87
42_A	289_Q	0.653	0.87
77_T	360_L	0.653	0.87
213_T	216_L	0.652	0.87
132_I	286_V	0.650	0.87
142_G	328_A	0.650	0.87
289_Q	292_I	0.649	0.87
27_F	240_A	0.649	0.87
27_F	233_S	0.648	0.87
269_T	272_M	0.648	0.87
354_A	402_G	0.647	0.87
195_V	321_V	0.646	0.87
43_V	216_L	0.646	0.87
74_G	219_A	0.646	0.87
177_L	284_I	0.645	0.87
402_G	405_I	0.644	0.87
311_R	315_A	0.644	0.87
74_G	224_S	0.643	0.87
92_W	355_M	0.642	0.87
64_L	235_K	0.642	0.87
381_E	385_N	0.642	0.87
247_F	251_F	0.640	0.86
380_Y	400_A	0.638	0.86
43_V	256_G	0.638	0.86
285_I	289_Q	0.637	0.86
401_L	404_I	0.636	0.86
86_L	90_V	0.636	0.86
197_A	203_H	0.635	0.86
190_G	193_H	0.635	0.86
394_A	434_K	0.634	0.86
114_G	300_G	0.634	0.86
242_F	246_I	0.633	0.86
78_A	241_W	0.631	0.86
116_G	331_G	0.630	0.86
17_K	20_P	0.630	0.86
11_Y	15_S	0.630	0.86
105_G	307_L	0.628	0.85
197_A	428_I	0.627	0.85
184_I	187_A	0.627	0.85
239_Y	242_F	0.626	0.85
402_G	406_G	0.625	0.85
56_F	258_A	0.625	0.85
126_G	252_L	0.624	0.85
37_V	217_Y	0.624	0.85
58_Q	206_L	0.623	0.85
159_G	298_Y	0.622	0.85
204_M	207_L	0.622	0.85
118_Y	152_M	0.621	0.85
287_F	291_I	0.621	0.85
153_T	317_V	0.620	0.85
375_D	380_Y	0.620	0.85
152_M	155_M	0.619	0.85
37_V	249_Y	0.618	0.84
76_L	360_L	0.618	0.84
188_L	193_H	0.617	0.84
105_G	306_N	0.616	0.84
191_G	196_M	0.615	0.84
75_S	78_A	0.615	0.84
153_T	157_Y	0.613	0.84
193_H	199_V	0.610	0.84
54_L	209_G	0.609	0.84
189_K	192_F	0.609	0.84
340_P	344_F	0.608	0.84
198_A	201_T	0.608	0.84
118_Y	153_T	0.605	0.83
260_V	263_T	0.604	0.83
64_L	147_W	0.604	0.83
193_H	196_M	0.604	0.83
233_S	237_A	0.604	0.83
198_A	202_S	0.603	0.83
82_A	234_A	0.603	0.83
421_T	430_Y	0.603	0.83
36_S	171_I	0.602	0.83
320_G	324_T	0.602	0.83
321_V	325_A	0.600	0.83
49_A	260_V	0.597	0.82
30_V	231_A	0.596	0.82
148_G	290_F	0.595	0.82
113_T	345_I	0.594	0.82
16_L	93_R	0.594	0.82
375_D	381_E	0.594	0.82
402_G	423_F	0.594	0.82
264_G	272_M	0.594	0.82
406_G	410_N	0.593	0.82
107_L	355_M	0.593	0.82
50_L	260_V	0.593	0.82
193_H	236_D	0.592	0.82
48_G	81_G	0.592	0.82
29_N	157_Y	0.590	0.82
184_I	188_L	0.588	0.81
324_T	327_A	0.587	0.81
259_I	263_T	0.586	0.81
380_Y	386_N	0.585	0.81
75_S	248_L	0.584	0.81
40_A	43_V	0.584	0.81
56_F	257_V	0.584	0.81
350_D	407_Y	0.583	0.81
68_V	250_P	0.583	0.81
177_L	281_V	0.582	0.81
30_V	78_A	0.582	0.81
217_Y	245_I	0.581	0.81
22_D	424_L	0.581	0.81
86_L	91_M	0.581	0.81
194_T	199_V	0.579	0.80
45_W	124_L	0.579	0.80
243_A	247_F	0.577	0.80
130_S	139_F	0.575	0.80
113_T	219_A	0.575	0.80
371_N	376_P	0.575	0.80
140_S	143_V	0.574	0.80
124_L	289_Q	0.574	0.80
70_L	74_G	0.573	0.80
46_A	212_A	0.572	0.80
181_G	217_Y	0.571	0.80
301_S	306_N	0.569	0.79
269_T	275_L	0.568	0.79
169_F	172_P	0.568	0.79
234_A	238_G	0.568	0.79
12_D	15_S	0.568	0.79
94_H	367_K	0.567	0.79
108_L	223_I	0.567	0.79
154_I	405_I	0.567	0.79
38_Y	89_Y	0.567	0.79
407_Y	410_N	0.566	0.79
115_I	305_V	0.566	0.79
99_W	391_I	0.566	0.79
316_S	319_N	0.566	0.79
49_A	53_G	0.566	0.79
66_G	70_L	0.566	0.79
55_T	359_V	0.565	0.79
223_I	226_D	0.565	0.79
125_F	155_M	0.564	0.79
361_A	426_Y	0.563	0.79
267_L	273_L	0.562	0.78
291_I	295_D	0.560	0.78
179_A	251_F	0.560	0.78
68_V	431_Y	0.557	0.78
313_E	317_V	0.557	0.78
376_P	385_N	0.555	0.78
367_K	371_N	0.555	0.78
392_N	433_I	0.555	0.78
417_N	421_T	0.554	0.78
215_G	349_G	0.553	0.77
20_P	230_F	0.552	0.77
150_I	339_T	0.552	0.77
243_A	397_L	0.552	0.77
304_L	315_A	0.551	0.77
70_L	222_I	0.551	0.77
231_A	237_A	0.549	0.77
88_T	108_L	0.548	0.77
395_G	430_Y	0.548	0.77
43_V	252_L	0.546	0.76
143_V	146_I	0.546	0.76
46_A	342_E	0.546	0.76
114_G	299_S	0.545	0.76
428_I	433_I	0.543	0.76
388_Y	397_L	0.543	0.76
70_L	220_G	0.543	0.76
156_T	297_L	0.542	0.76
37_V	289_Q	0.542	0.76
420_V	428_I	0.541	0.76
165_F	170_T	0.540	0.76
98_R	379_R	0.540	0.76
167_S	292_I	0.539	0.76
44_I	252_L	0.538	0.75
151_L	154_I	0.538	0.75
237_A	241_W	0.537	0.75
396_I	433_I	0.537	0.75
272_M	275_L	0.537	0.75
109_I	220_G	0.535	0.75
365_I	369_Y	0.535	0.75
223_I	299_S	0.535	0.75
352_L	415_A	0.535	0.75
360_L	419_L	0.534	0.75
94_H	376_P	0.533	0.75
398_A	401_L	0.533	0.75
277_M	281_V	0.532	0.75
42_A	120_V	0.532	0.75
192_F	196_M	0.532	0.75
217_Y	220_G	0.531	0.75
264_G	402_G	0.531	0.75
215_G	353_P	0.530	0.74
169_F	176_W	0.529	0.74
115_I	348_L	0.528	0.74
220_G	341_F	0.528	0.74
72_I	384_P	0.527	0.74
314_I	331_G	0.527	0.74
176_W	183_A	0.525	0.74
389_Y	432_I	0.525	0.74
83_Y	369_Y	0.523	0.73
38_Y	47_G	0.523	0.73
270_N	275_L	0.522	0.73
297_L	301_S	0.521	0.73
401_L	429_I	0.521	0.73
40_A	44_I	0.520	0.73
194_T	367_K	0.520	0.73
36_S	167_S	0.520	0.73
57_S	60_I	0.519	0.73
33_V	53_G	0.519	0.73
115_I	322_I	0.518	0.73
344_F	348_L	0.518	0.73
209_G	213_T	0.517	0.73
238_G	242_F	0.515	0.72
27_F	30_V	0.514	0.72
178_I	288_G	0.514	0.72
368_K	389_Y	0.513	0.72
166_L	291_I	0.513	0.72
227_I	295_D	0.512	0.72
52_Y	205_S	0.512	0.72
304_L	307_L	0.511	0.72
15_S	305_V	0.511	0.72
114_G	296_N	0.511	0.72
322_I	326_I	0.508	0.71
65_S	270_N	0.508	0.71
147_W	154_I	0.505	0.71
134_P	144_A	0.504	0.71
124_L	348_L	0.504	0.71
387_K	391_I	0.504	0.71
120_V	155_M	0.503	0.71
133_F	147_W	0.502	0.70
315_A	329_Y	0.502	0.70
19_V	85_G	0.501	0.70
135_N	139_F	0.501	0.70
36_S	292_I	0.501	0.70
359_V	424_L	0.500	0.70
100_G	391_I	0.500	0.70

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2jlnA	1	0.9514	100	0.17	Contact Map
3dh4A	3	0.8631	99.4	0.849	Contact Map
4djkA	2	0.8565	99.3	0.853	Contact Map
2xq2A	2	0.8675	99.3	0.854	Contact Map
3l1lA	2	0.8631	99.3	0.856	Contact Map
3giaA	1	0.8742	99.3	0.859	Contact Map
4wgvA	2	0.7704	98	0.908	Contact Map
4us3A	1	0.8234	97.8	0.911	Contact Map
2a65A	2	0.9139	97.6	0.916	Contact Map
4xp4A	1	0.9205	93.7	0.94	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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