Q97XP1 - SULSO - GREMLIN Contacts

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Q97XP1 - Transposase ISC1316

UniProt:	Q97XP1	Sequences: MPTLGFRFRAYTDEQTLRALKAQLKLACKIYNTLRWADIYFYQRDGKGLTQTELRQLALDLRKQDDEYKKLYSQVVQQIADRYYEARQRFFDGLARFPKERKPHKYYSLVYTQSGWKILQVREIRKGSKKKLITLKLSNLGTFKVIVHRDFPLDKVKRVIVKLTRSERIYITFVVDHEFPKLPNTGKVVAIDVGVEKLLVTSDGEYFPNLRPYEKALWKVKHLHRELSRKKFLSNNWFKAKVKLARAYEYLKNLRTDLYMKLGKWFAEHYDVVVMEDIHVKQLIGKSLRSLRRRLSDVAFSELRDLIKYQLEKYGKKLILVNPAYTSKTCAKCGYVKEDLSLSDRVFVCPNCGWIADRDYNASLNILRGSGSERPLVWSSALYQYQHFGTGMAEL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	395 (353)
Sequences:	4601 (2966)
Seq/√Len:	157.8

ECOLI - INSQ
HALSA - Q9HSW9 Q9HHJ9 Q9HM87 Q9HHG8 Q9HSW7 Q9HSZ6 Q9HSD4 Q9HHU6 Q9HSY4 Q9HHX8
SULSO - Q97XP1 Q97Y44 Q97V47 Q97YI2 Q97XQ8 Q97V25 Q97YW4 Q97XA4 Q97V53 Q97Y48 Q97U51 Q97U68 Q97YU1 Q97YI5 Q97Y67 Q97Z61 Q97XQ0 Q97UQ8 Q97XB6 Q97YW9 Q7LXD9 Q97X39 Q97WY6 Q97WZ3 Q7LXH2 Q7LXH6 Q97YF7 Q97U09 Q7LX59 Q7LX75 Y2105 Q97YK6 Q7LXH9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
257_D	261_K	5.511	1.00
279_H	282_Q	4.309	1.00
331_A	361_N	4.260	1.00
311_L	318_L	3.656	1.00
198_L	303_L	3.124	1.00
274_V	370_S	3.046	1.00
275_M	307_I	2.969	1.00
304_R	320_L	2.931	1.00
264_K	268_E	2.847	1.00
302_E	306_L	2.702	1.00
341_S	344_D	2.603	1.00
284_I	296_S	2.530	1.00
159_V	171_I	2.452	1.00
303_L	307_I	2.443	1.00
217_L	293_R	2.398	1.00
325_Y	328_K	2.370	1.00
308_K	320_L	2.370	1.00
302_E	305_D	2.350	1.00
329_T	336_V	2.319	1.00
321_V	366_I	2.252	1.00
267_A	311_L	2.199	1.00
348_V	355_I	2.192	1.00
369_G	372_S	2.175	1.00
260_M	306_L	2.161	1.00
273_V	311_L	2.123	1.00
13_D	16_T	2.100	1.00
223_L	240_A	2.083	1.00
326_T	366_I	2.076	1.00
260_M	309_Y	2.057	1.00
216_A	254_L	2.038	1.00
275_M	318_L	2.009	1.00
333_C	352_C	1.995	1.00
198_L	258_L	1.986	1.00
330_C	333_C	1.974	1.00
263_G	306_L	1.969	1.00
328_K	340_L	1.952	1.00
51_Q	55_R	1.926	1.00
289_R	292_R	1.925	1.00
157_K	176_D	1.915	1.00
345_R	358_R	1.913	1.00
349_C	352_C	1.893	1.00
240_A	244_L	1.867	1.00
256_T	302_E	1.865	1.00
333_C	349_C	1.850	1.00
39_I	97_F	1.846	1.00
36_W	40_Y	1.841	1.00
34_L	80_A	1.829	1.00
308_K	312_E	1.827	1.00
260_M	263_G	1.816	1.00
260_M	310_Q	1.813	1.00
259_Y	306_L	1.813	1.00
271_D	316_K	1.802	1.00
21_K	169_I	1.790	1.00
330_C	352_C	1.760	1.00
235_N	238_F	1.757	1.00
332_K	354_W	1.757	1.00
52_T	55_R	1.747	1.00
347_F	356_A	1.714	1.00
330_C	349_C	1.694	1.00
22_A	70_K	1.693	1.00
286_K	292_R	1.674	1.00
51_Q	81_D	1.670	1.00
35_R	83_Y	1.670	1.00
191_I	199_L	1.644	1.00
135_L	171_I	1.601	1.00
29_K	67_E	1.595	1.00
9_R	168_R	1.585	1.00
230_K	240_A	1.577	1.00
20_L	169_I	1.572	1.00
275_M	320_L	1.568	1.00
259_Y	302_E	1.559	1.00
82_R	110_V	1.553	1.00
275_M	304_R	1.540	1.00
238_F	241_K	1.527	1.00
18_R	22_A	1.518	1.00
226_E	230_K	1.512	1.00
263_G	309_Y	1.505	1.00
74_Q	113_Q	1.504	1.00
346_V	355_I	1.495	1.00
227_L	241_K	1.473	1.00
277_D	320_L	1.470	1.00
347_F	354_W	1.462	1.00
74_Q	112_T	1.447	1.00
17_L	21_K	1.444	1.00
5_G	172_T	1.439	1.00
233_L	237_W	1.433	1.00
188_V	367_L	1.428	1.00
342_L	345_R	1.426	1.00
340_L	344_D	1.397	1.00
200_V	360_Y	1.388	1.00
364_L	368_R	1.388	1.00
308_K	318_L	1.379	1.00
201_T	205_E	1.374	1.00
223_L	226_E	1.349	1.00
189_V	201_T	1.336	1.00
249_E	253_N	1.326	1.00
52_T	56_Q	1.323	1.00
84_Y	88_Q	1.314	1.00
263_G	310_Q	1.313	1.00
276_E	323_P	1.306	1.00
87_R	97_F	1.306	1.00
197_K	200_V	1.293	1.00
168_R	249_E	1.293	1.00
134_T	142_T	1.282	1.00
34_L	83_Y	1.279	1.00
337_K	340_L	1.277	1.00
50_T	53_E	1.274	1.00
335_Y	350_P	1.271	1.00
55_R	81_D	1.264	1.00
286_K	289_R	1.262	1.00
24_L	169_I	1.255	1.00
89_R	95_A	1.248	1.00
295_L	300_F	1.236	1.00
38_D	54_L	1.225	1.00
263_G	303_L	1.224	1.00
220_V	244_L	1.222	1.00
93_G	96_R	1.211	1.00
166_S	249_E	1.208	1.00
188_V	272_V	1.205	1.00
331_A	364_L	1.203	1.00
220_V	248_Y	1.195	1.00
202_S	206_Y	1.191	1.00
27_A	79_I	1.190	1.00
37_A	57_L	1.186	1.00
14_E	17_L	1.173	1.00
216_A	251_L	1.171	1.00
342_L	358_R	1.169	1.00
39_I	43_Q	1.169	1.00
223_L	247_A	1.169	1.00
227_L	244_L	1.167	1.00
189_V	270_Y	1.162	1.00
55_R	80_A	1.160	1.00
164_T	168_R	1.159	1.00
267_A	314_Y	1.157	1.00
164_T	167_E	1.150	1.00
219_K	223_L	1.147	1.00
259_Y	303_L	1.138	1.00
356_A	364_L	1.132	1.00
78_Q	81_D	1.132	1.00
265_W	269_H	1.130	1.00
162_K	172_T	1.128	1.00
12_T	16_T	1.128	1.00
136_K	142_T	1.124	1.00
337_K	347_F	1.124	1.00
306_L	309_Y	1.116	1.00
191_I	201_T	1.112	1.00
279_H	323_P	1.111	1.00
51_Q	80_A	1.105	1.00
85_E	89_R	1.104	1.00
193_V	300_F	1.101	1.00
88_Q	92_D	1.097	0.99
78_Q	112_T	1.091	0.99
321_V	369_G	1.083	0.99
58_A	80_A	1.069	0.99
264_K	314_Y	1.060	0.99
256_T	306_L	1.058	0.99
190_A	367_L	1.054	0.99
263_G	307_I	1.053	0.99
360_Y	364_L	1.048	0.99
195_V	298_V	1.047	0.99
259_Y	263_G	1.039	0.99
329_T	369_G	1.036	0.99
72_Y	75_V	1.031	0.99
89_R	93_G	1.026	0.99
268_E	314_Y	1.025	0.99
337_K	341_S	1.021	0.99
284_I	292_R	1.017	0.99
331_A	362_A	1.016	0.99
227_L	240_A	1.014	0.99
62_R	76_V	1.009	0.99
12_T	20_L	1.008	0.99
267_A	273_V	1.008	0.99
310_Q	313_K	1.004	0.99
331_A	356_A	1.004	0.99
326_T	369_G	1.002	0.99
185_T	271_D	1.002	0.99
197_K	208_P	1.001	0.99
90_F	97_F	1.000	0.99
341_S	345_R	0.995	0.99
40_Y	44_R	0.994	0.99
29_K	33_T	0.990	0.99
224_H	228_S	0.988	0.99
31_Y	79_I	0.979	0.99
356_A	360_Y	0.976	0.99
337_K	350_P	0.974	0.99
111_Y	114_S	0.971	0.99
58_A	77_Q	0.970	0.99
117_K	120_Q	0.965	0.99
286_K	290_S	0.965	0.99
116_W	120_Q	0.957	0.99
328_K	338_E	0.952	0.99
56_Q	59_L	0.951	0.99
328_K	336_V	0.949	0.99
328_K	339_D	0.945	0.98
74_Q	78_Q	0.945	0.98
341_S	358_R	0.945	0.98
323_P	326_T	0.943	0.98
6_F	175_V	0.942	0.98
206_Y	357_D	0.937	0.98
89_R	94_L	0.935	0.98
26_L	67_E	0.934	0.98
90_F	98_P	0.933	0.98
252_K	256_T	0.933	0.98
188_V	371_G	0.931	0.98
267_A	316_K	0.931	0.98
224_H	244_L	0.928	0.98
321_V	370_S	0.925	0.98
193_V	304_R	0.923	0.98
274_V	366_I	0.923	0.98
305_D	308_K	0.922	0.98
25_K	28_C	0.921	0.98
137_L	161_V	0.920	0.98
220_V	228_S	0.915	0.98
344_D	347_F	0.915	0.98
237_W	241_K	0.914	0.98
280_V	301_S	0.913	0.98
221_K	224_H	0.911	0.98
277_D	323_P	0.910	0.98
335_Y	351_N	0.909	0.98
311_L	316_K	0.908	0.98
35_R	87_R	0.905	0.98
164_T	249_E	0.903	0.98
346_V	356_A	0.901	0.98
31_Y	86_A	0.899	0.98
110_V	158_R	0.898	0.98
331_A	354_W	0.894	0.98
223_L	244_L	0.891	0.98
33_T	37_A	0.891	0.98
60_D	64_Q	0.890	0.98
68_Y	76_V	0.885	0.98
41_F	45_D	0.885	0.98
340_L	347_F	0.879	0.98
345_R	357_D	0.871	0.97
259_Y	299_A	0.870	0.97
344_D	358_R	0.868	0.97
82_R	160_I	0.867	0.97
207_F	262_L	0.867	0.97
31_Y	83_Y	0.865	0.97
266_F	273_V	0.861	0.97
212_P	254_L	0.858	0.97
89_R	92_D	0.856	0.97
220_V	251_L	0.855	0.97
335_Y	347_F	0.854	0.97
197_K	206_Y	0.853	0.97
220_V	224_H	0.851	0.97
230_K	236_N	0.850	0.97
77_Q	81_D	0.849	0.97
361_N	365_N	0.849	0.97
272_V	317_K	0.845	0.97
250_Y	254_L	0.844	0.97
291_L	295_L	0.843	0.97
224_H	248_Y	0.841	0.97
8_F	171_I	0.837	0.97
188_V	274_V	0.837	0.97
216_A	220_V	0.830	0.97
59_L	62_R	0.827	0.96
8_F	149_R	0.824	0.96
227_L	237_W	0.820	0.96
200_V	206_Y	0.820	0.96
329_T	338_E	0.819	0.96
247_A	251_L	0.817	0.96
110_V	160_I	0.815	0.96
17_L	169_I	0.813	0.96
364_L	367_L	0.812	0.96
78_Q	110_V	0.811	0.96
264_K	310_Q	0.811	0.96
195_V	284_I	0.810	0.96
55_R	59_L	0.809	0.96
117_K	136_K	0.808	0.96
228_S	244_L	0.806	0.96
262_L	265_W	0.805	0.96
362_A	365_N	0.803	0.96
213_Y	216_A	0.802	0.96
42_Y	87_R	0.801	0.96
160_I	172_T	0.799	0.96
258_L	262_L	0.796	0.96
23_Q	27_A	0.791	0.95
347_F	358_R	0.788	0.95
328_K	337_K	0.786	0.95
25_K	29_K	0.784	0.95
241_K	245_A	0.782	0.95
187_K	271_D	0.781	0.95
41_F	49_L	0.779	0.95
227_L	230_K	0.779	0.95
34_L	54_L	0.777	0.95
272_V	319_I	0.777	0.95
36_W	100_E	0.777	0.95
39_I	87_R	0.774	0.95
360_Y	363_S	0.774	0.95
222_H	226_E	0.773	0.95
186_G	271_D	0.773	0.95
340_L	358_R	0.768	0.95
200_V	207_F	0.767	0.95
74_Q	114_S	0.763	0.94
243_K	246_R	0.763	0.94
325_Y	369_G	0.761	0.94
289_R	296_S	0.758	0.94
331_A	368_R	0.756	0.94
301_S	305_D	0.755	0.94
10_A	171_I	0.755	0.94
223_L	243_K	0.753	0.94
277_D	304_R	0.752	0.94
74_Q	77_Q	0.752	0.94
329_T	365_N	0.750	0.94
147_V	150_D	0.749	0.94
193_V	199_L	0.749	0.94
26_L	68_Y	0.748	0.94
195_V	294_R	0.747	0.94
111_Y	137_L	0.747	0.94
212_P	216_A	0.745	0.94
34_L	58_A	0.744	0.94
134_T	137_L	0.742	0.94
26_L	29_K	0.740	0.94
19_A	23_Q	0.739	0.93
332_K	364_L	0.739	0.93
71_L	74_Q	0.736	0.93
38_D	84_Y	0.735	0.93
194_G	200_V	0.733	0.93
216_A	247_A	0.731	0.93
319_I	370_S	0.729	0.93
205_E	265_W	0.726	0.93
30_I	79_I	0.726	0.93
209_N	298_V	0.724	0.93
226_E	229_R	0.723	0.93
192_D	359_D	0.723	0.93
37_A	54_L	0.722	0.93
189_V	202_S	0.722	0.93
273_V	307_I	0.722	0.93
42_Y	46_G	0.720	0.93
339_D	344_D	0.717	0.92
78_Q	82_R	0.712	0.92
158_R	174_V	0.709	0.92
59_L	63_K	0.707	0.92
221_K	225_R	0.705	0.92
199_L	262_L	0.702	0.92
255_R	297_D	0.701	0.92
268_E	272_V	0.699	0.91
189_V	273_V	0.698	0.91
114_S	117_K	0.697	0.91
132_L	137_L	0.695	0.91
26_L	71_L	0.695	0.91
14_E	18_R	0.693	0.91
109_L	113_Q	0.692	0.91
73_S	112_T	0.692	0.91
225_R	228_S	0.691	0.91
182_L	316_K	0.691	0.91
203_D	270_Y	0.691	0.91
209_N	212_P	0.689	0.91
251_L	297_D	0.683	0.91
116_W	138_S	0.682	0.90
37_A	40_Y	0.682	0.90
309_Y	313_K	0.681	0.90
161_V	171_I	0.677	0.90
80_A	84_Y	0.677	0.90
325_Y	329_T	0.674	0.90
274_V	319_I	0.674	0.90
87_R	90_F	0.673	0.90
216_A	250_Y	0.669	0.90
87_R	91_F	0.669	0.90
202_S	363_S	0.668	0.90
266_F	270_Y	0.667	0.89
79_I	83_Y	0.667	0.89
278_I	323_P	0.665	0.89
115_G	138_S	0.664	0.89
15_Q	18_R	0.661	0.89
120_Q	133_I	0.659	0.89
198_L	263_G	0.658	0.89
9_R	170_Y	0.657	0.89
338_E	347_F	0.656	0.89
72_Y	111_Y	0.655	0.89
5_G	174_V	0.653	0.88
104_H	107_Y	0.652	0.88
196_E	200_V	0.652	0.88
340_L	345_R	0.652	0.88
182_L	185_T	0.651	0.88
184_N	187_K	0.651	0.88
325_Y	336_V	0.649	0.88
202_S	360_Y	0.647	0.88
236_N	239_K	0.645	0.88
53_E	56_Q	0.644	0.88
136_K	140_L	0.643	0.88
282_Q	323_P	0.642	0.88
199_L	207_F	0.641	0.88
11_Y	146_I	0.641	0.88
19_A	22_A	0.640	0.87
140_L	143_F	0.640	0.87
111_Y	115_G	0.633	0.87
221_K	228_S	0.633	0.87
192_D	327_S	0.633	0.87
54_L	57_L	0.632	0.87
71_L	76_V	0.632	0.87
179_F	312_E	0.630	0.87
22_A	26_L	0.629	0.87
37_A	41_F	0.629	0.87
307_I	318_L	0.627	0.86
38_D	87_R	0.627	0.86
83_Y	87_R	0.627	0.86
234_S	237_W	0.623	0.86
20_L	24_L	0.622	0.86
135_L	138_S	0.621	0.86
42_Y	91_F	0.618	0.86
311_L	314_Y	0.617	0.86
40_Y	43_Q	0.615	0.85
207_F	210_L	0.615	0.85
137_L	143_F	0.613	0.85
20_L	109_L	0.613	0.85
91_F	94_L	0.612	0.85
51_Q	54_L	0.612	0.85
81_D	112_T	0.610	0.85
33_T	61_L	0.610	0.85
76_V	79_I	0.609	0.85
198_L	298_V	0.608	0.85
274_V	367_L	0.607	0.85
38_D	48_G	0.606	0.84
59_L	73_S	0.603	0.84
36_W	39_I	0.603	0.84
253_N	256_T	0.602	0.84
7_R	162_K	0.601	0.84
135_L	159_V	0.600	0.84
214_E	217_L	0.599	0.84
282_Q	295_L	0.599	0.84
206_Y	360_Y	0.596	0.84
214_E	293_R	0.594	0.83
332_K	356_A	0.594	0.83
41_F	47_K	0.593	0.83
306_L	310_Q	0.593	0.83
59_L	65_D	0.592	0.83
221_K	289_R	0.591	0.83
199_L	303_L	0.590	0.83
37_A	61_L	0.590	0.83
280_V	300_F	0.589	0.83
57_L	60_D	0.587	0.83
226_E	240_A	0.587	0.83
366_I	369_G	0.587	0.83
74_Q	115_G	0.587	0.83
225_R	229_R	0.587	0.83
47_K	53_E	0.586	0.82
12_T	17_L	0.584	0.82
155_K	176_D	0.584	0.82
145_V	148_H	0.583	0.82
342_L	357_D	0.583	0.82
135_L	141_G	0.581	0.82
233_L	238_F	0.579	0.82
23_Q	109_L	0.578	0.82
348_V	354_W	0.578	0.82
356_A	361_N	0.577	0.82
304_R	308_K	0.576	0.81
7_R	172_T	0.575	0.81
33_T	67_E	0.574	0.81
111_Y	116_W	0.573	0.81
5_G	162_K	0.572	0.81
368_R	371_G	0.570	0.81
337_K	358_R	0.569	0.81
15_Q	19_A	0.569	0.81
116_W	159_V	0.565	0.80
12_T	143_F	0.564	0.80
136_K	139_N	0.564	0.80
193_V	280_V	0.564	0.80
198_L	259_Y	0.562	0.80
75_V	109_L	0.561	0.80
111_Y	118_I	0.560	0.80
21_K	164_T	0.560	0.80
248_Y	255_R	0.558	0.79
48_G	84_Y	0.557	0.79
6_F	149_R	0.556	0.79
335_Y	339_D	0.555	0.79
283_L	295_L	0.555	0.79
213_Y	217_L	0.553	0.79
238_F	242_V	0.553	0.79
168_R	253_N	0.550	0.78
280_V	296_S	0.549	0.78
51_Q	59_L	0.549	0.78
212_P	297_D	0.546	0.78
115_G	118_I	0.546	0.78
214_E	294_R	0.546	0.78
274_V	369_G	0.545	0.78
190_A	274_V	0.542	0.77
8_F	147_V	0.542	0.77
207_F	265_W	0.540	0.77
23_Q	71_L	0.540	0.77
329_T	334_G	0.540	0.77
10_A	145_V	0.539	0.77
322_N	325_Y	0.536	0.77
23_Q	26_L	0.535	0.76
190_A	363_S	0.535	0.76
256_T	260_M	0.533	0.76
133_I	136_K	0.532	0.76
248_Y	252_K	0.531	0.76
132_L	136_K	0.531	0.76
253_N	257_D	0.531	0.76
47_K	50_T	0.531	0.76
7_R	256_T	0.530	0.76
192_D	276_E	0.529	0.76
337_K	344_D	0.528	0.76
49_L	54_L	0.527	0.75
23_Q	72_Y	0.526	0.75
90_F	93_G	0.526	0.75
347_F	350_P	0.524	0.75
323_P	369_G	0.523	0.75
333_C	337_K	0.522	0.75
92_D	96_R	0.522	0.75
59_L	80_A	0.521	0.75
222_H	225_R	0.521	0.75
342_L	346_V	0.521	0.75
292_R	296_S	0.521	0.75
270_Y	273_V	0.521	0.75
31_Y	35_R	0.519	0.74
190_A	202_S	0.519	0.74
80_A	83_Y	0.518	0.74
291_L	294_R	0.517	0.74
286_K	291_L	0.516	0.74
73_S	115_G	0.513	0.73
51_Q	56_Q	0.513	0.73
226_E	243_K	0.512	0.73
274_V	371_G	0.511	0.73
196_E	345_R	0.510	0.73
18_R	21_K	0.510	0.73
119_L	136_K	0.509	0.73
237_W	240_A	0.509	0.73
299_A	302_E	0.509	0.73
23_Q	111_Y	0.508	0.73
324_A	328_K	0.508	0.73
262_L	303_L	0.506	0.72
357_D	362_A	0.506	0.72
91_F	98_P	0.504	0.72
261_K	264_K	0.504	0.72
230_K	234_S	0.504	0.72
41_F	48_G	0.503	0.72
170_Y	249_E	0.500	0.72
22_A	25_K	0.500	0.72

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1vhxA	2	0.3468	94.1	0.932	Contact Map
1nu0A	1	0.3291	93.6	0.934	Contact Map
1iv0A	1	0.2456	91.9	0.937	Contact Map
4aybP	1	0.1089	87.3	0.943	Contact Map
1ffkW	1	0.1823	85.7	0.944	Contact Map
1qypA	1	0.1165	83.6	0.945	Contact Map
4a17Y	1	0.2228	81.3	0.947	Contact Map
1vd4A	1	0.1418	81.2	0.947	Contact Map
3j20Y	1	0.1266	80.3	0.947	Contact Map
3zf7o	1	0.2228	80	0.948	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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