Q97XM7 - SULSO - GREMLIN Contacts

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Q97XM7 - Partial transposon ISC1190

UniProt:	Q97XM7	Sequences: MEAPVAGIDISKDKLVVYFQGKYYEFQNNKQGFEGVKQVLPKGCKVAIESTGIYHINLAKYLGKEYDVRIINPFILKKFKDIRGKKSDKNDKKLAELVVSIGSEFTTSEAKELTSQWDFVTRSIARVKNRLRRDLILLGYRDSLSRKNLNEVLRGEDNAALSEIRFLLGELERLEARKREIEEELEDLVPKDSLIFTIPGIGRTLGCIILARVGDVKRFGDKKRFVAYCGPLVESSGKSVVSRGISKRGDAVLRSSILQL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	260 (254)
Sequences:	4615 (3489)
Seq/√Len:	218.9

SULSO - Q97XM7 Q97Y59 Q97XK2 Q97WC0 Q97WZ5 Q97ZN4 Q97VS0 Q97X07 Q97UU8 Q97X26 Q97UF7 Q97X29 Q97X12 Q97UQ6 Q97YE1 Q97Y06 Q97VB2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
47_A	99_V	5.016	1.00
18_Y	92_K	3.119	1.00
162_S	184_E	3.053	1.00
124_I	175_E	2.936	1.00
213_V	225_F	2.766	1.00
76_L	95_A	2.705	1.00
123_S	126_R	2.619	1.00
166_F	177_R	2.511	1.00
229_C	253_L	2.410	1.00
47_A	95_A	2.367	1.00
169_G	177_R	2.337	1.00
46_V	66_Y	2.303	1.00
220_G	224_R	2.281	1.00
14_K	25_E	2.273	1.00
117_W	121_T	2.259	1.00
221_D	224_R	2.123	1.00
87_S	233_V	2.109	1.00
123_S	130_R	2.089	1.00
219_F	228_Y	2.075	1.00
8_I	36_V	2.064	1.00
125_A	129_N	2.053	1.00
235_S	240_V	2.030	1.00
173_R	177_R	2.021	1.00
124_I	178_K	1.959	1.00
118_D	255_S	1.931	1.00
48_I	68_V	1.909	1.00
6_A	19_F	1.907	1.00
8_I	15_L	1.900	1.00
117_W	182_E	1.896	1.00
194_L	197_T	1.895	1.00
170_E	173_R	1.869	1.00
45_K	69_R	1.841	1.00
60_K	108_S	1.823	1.00
201_I	206_G	1.811	1.00
120_V	178_K	1.792	1.00
184_E	187_D	1.787	1.00
115_S	212_R	1.781	1.00
154_R	172_E	1.761	1.00
182_E	185_L	1.740	1.00
196_F	203_R	1.734	1.00
208_I	256_S	1.715	1.00
97_L	101_I	1.714	1.00
123_S	170_E	1.685	1.00
17_V	36_V	1.666	1.00
205_L	256_S	1.650	1.00
8_I	58_L	1.647	1.00
131_L	171_L	1.623	1.00
11_S	16_V	1.616	1.00
121_T	124_I	1.585	1.00
29_N	32_G	1.577	1.00
61_Y	64_K	1.571	1.00
61_Y	65_E	1.567	1.00
189_V	196_F	1.539	1.00
13_D	238_K	1.534	1.00
170_E	177_R	1.530	1.00
16_V	25_E	1.521	1.00
85_K	233_V	1.516	1.00
18_Y	93_K	1.508	1.00
48_I	59_A	1.486	1.00
121_T	178_K	1.478	1.00
179_R	182_E	1.477	1.00
77_K	80_K	1.474	1.00
245_I	254_R	1.445	1.00
166_F	180_E	1.435	1.00
168_L	172_E	1.426	1.00
24_Y	39_V	1.423	1.00
124_I	128_K	1.414	1.00
124_I	171_L	1.410	1.00
80_K	94_L	1.400	1.00
47_A	71_I	1.389	1.00
171_L	175_E	1.370	1.00
117_W	204_T	1.356	1.00
212_R	250_D	1.342	1.00
169_G	176_A	1.340	1.00
152_V	156_E	1.333	1.00
150_N	154_R	1.329	1.00
154_R	158_N	1.326	1.00
150_N	157_D	1.320	1.00
46_V	62_L	1.320	1.00
201_I	205_L	1.319	1.00
187_D	191_K	1.318	1.00
169_G	173_R	1.313	1.00
195_I	206_G	1.304	1.00
11_S	14_K	1.304	1.00
118_D	252_V	1.293	1.00
7_G	96_E	1.293	1.00
40_L	46_V	1.288	1.00
127_V	130_R	1.282	1.00
123_S	127_V	1.276	1.00
177_R	180_E	1.265	1.00
6_A	40_L	1.263	1.00
182_E	186_E	1.257	1.00
153_L	157_D	1.237	1.00
126_R	129_N	1.236	1.00
119_F	130_R	1.229	1.00
147_K	151_E	1.228	1.00
116_Q	120_V	1.217	1.00
104_E	107_T	1.210	1.00
27_Q	32_G	1.207	1.00
33_F	61_Y	1.190	1.00
8_I	17_V	1.187	1.00
74_F	78_K	1.167	1.00
148_N	151_E	1.166	1.00
45_K	67_D	1.148	1.00
93_K	97_L	1.141	1.00
12_K	136_I	1.140	1.00
55_H	70_I	1.139	1.00
37_K	61_Y	1.139	1.00
10_I	15_L	1.129	1.00
131_L	164_I	1.123	1.00
17_V	39_V	1.117	1.00
175_E	179_R	1.114	1.00
6_A	17_V	1.112	1.00
149_L	152_V	1.106	1.00
117_W	178_K	1.104	1.00
71_I	76_L	1.102	1.00
150_N	153_L	1.094	1.00
142_D	145_S	1.093	1.00
213_V	216_V	1.091	1.00
145_S	157_D	1.084	1.00
122_R	126_R	1.076	1.00
33_F	57_N	1.072	1.00
127_V	131_L	1.067	1.00
114_T	252_V	1.060	1.00
141_R	149_L	1.059	1.00
6_A	46_V	1.056	1.00
176_A	180_E	1.056	1.00
59_A	68_V	1.052	1.00
150_N	156_E	1.044	1.00
186_E	203_R	1.042	1.00
32_G	35_G	1.039	1.00
121_T	125_A	1.037	1.00
152_V	155_G	1.036	1.00
86_K	91_D	1.029	1.00
26_F	39_V	1.013	1.00
153_L	156_E	1.011	1.00
143_S	146_R	1.009	1.00
192_D	210_L	1.006	1.00
151_E	154_R	1.001	1.00
5_V	100_S	0.994	1.00
6_A	44_C	0.992	1.00
155_G	158_N	0.992	1.00
114_T	207_C	0.992	1.00
247_K	254_R	0.989	1.00
38_Q	41_P	0.980	1.00
111_K	212_R	0.966	1.00
59_A	70_I	0.961	1.00
158_N	161_L	0.949	1.00
5_V	99_V	0.942	1.00
58_L	62_L	0.937	1.00
69_R	99_V	0.933	1.00
26_F	32_G	0.933	1.00
146_R	150_N	0.923	0.99
147_K	150_N	0.921	0.99
148_N	152_V	0.912	0.99
50_S	73_P	0.906	0.99
163_E	166_F	0.903	0.99
36_V	40_L	0.901	0.99
10_I	48_I	0.901	0.99
236_S	240_V	0.900	0.99
84_G	248_R	0.895	0.99
53_I	136_I	0.886	0.99
84_G	227_A	0.883	0.99
113_L	181_I	0.882	0.99
148_N	157_D	0.877	0.99
142_D	146_R	0.875	0.99
224_R	227_A	0.870	0.99
152_V	157_D	0.870	0.99
85_K	90_N	0.869	0.99
95_A	98_V	0.867	0.99
116_Q	163_E	0.858	0.99
166_F	170_E	0.858	0.99
151_E	155_G	0.858	0.99
161_L	165_R	0.857	0.99
196_F	206_G	0.856	0.99
149_L	153_L	0.856	0.99
147_K	157_D	0.850	0.99
173_R	176_A	0.850	0.99
114_T	185_L	0.844	0.99
245_I	249_G	0.844	0.99
114_T	211_A	0.843	0.99
45_K	99_V	0.834	0.99
166_F	184_E	0.828	0.99
17_V	26_F	0.826	0.99
33_F	39_V	0.822	0.99
116_Q	166_F	0.821	0.99
11_S	15_L	0.818	0.99
144_L	152_V	0.817	0.99
37_K	65_E	0.817	0.99
79_F	101_I	0.812	0.99
146_R	149_L	0.807	0.99
184_E	188_L	0.805	0.99
128_K	171_L	0.800	0.98
40_L	62_L	0.796	0.98
7_G	92_K	0.792	0.98
31_Q	35_G	0.791	0.98
114_T	208_I	0.791	0.98
228_Y	250_D	0.790	0.98
127_V	171_L	0.789	0.98
148_N	153_L	0.788	0.98
232_L	246_S	0.782	0.98
153_L	158_N	0.781	0.98
118_D	122_R	0.781	0.98
150_N	155_G	0.778	0.98
212_R	252_V	0.775	0.98
15_L	28_N	0.774	0.98
106_T	191_K	0.770	0.98
145_S	149_L	0.770	0.98
150_N	172_E	0.766	0.98
162_S	165_R	0.764	0.98
233_V	240_V	0.759	0.98
48_I	95_A	0.753	0.98
50_S	70_I	0.753	0.98
235_S	241_V	0.748	0.98
176_A	179_R	0.746	0.98
125_A	128_K	0.746	0.98
154_R	157_D	0.744	0.98
127_V	167_L	0.740	0.97
16_V	89_K	0.729	0.97
119_F	123_S	0.729	0.97
186_E	190_P	0.726	0.97
174_L	178_K	0.724	0.97
48_I	70_I	0.724	0.97
159_A	162_S	0.723	0.97
127_V	170_E	0.721	0.97
185_L	189_V	0.721	0.97
43_G	67_D	0.721	0.97
145_S	148_N	0.720	0.97
51_T	54_Y	0.719	0.97
174_L	177_R	0.718	0.97
182_E	189_V	0.714	0.97
41_P	65_E	0.713	0.97
209_I	253_L	0.712	0.97
72_N	75_I	0.707	0.97
215_D	218_R	0.703	0.97
208_I	212_R	0.703	0.97
143_S	149_L	0.703	0.97
47_A	76_L	0.703	0.97
104_E	108_S	0.702	0.97
201_I	209_I	0.702	0.97
162_S	173_R	0.700	0.96
18_Y	96_E	0.698	0.96
35_G	38_Q	0.693	0.96
151_E	156_E	0.688	0.96
170_E	174_L	0.688	0.96
87_S	235_S	0.685	0.96
73_P	212_R	0.685	0.96
167_L	170_E	0.684	0.96
159_A	184_E	0.679	0.96
175_E	178_K	0.677	0.96
255_S	258_L	0.676	0.96
15_L	58_L	0.675	0.96
142_D	148_N	0.675	0.96
88_D	236_S	0.675	0.96
180_E	184_E	0.672	0.96
162_S	166_F	0.672	0.96
129_N	133_R	0.666	0.95
32_G	36_V	0.665	0.95
151_E	157_D	0.665	0.95
106_T	109_E	0.664	0.95
148_N	155_G	0.664	0.95
15_L	26_F	0.661	0.95
147_K	154_R	0.661	0.95
108_S	112_E	0.660	0.95
37_K	41_P	0.658	0.95
116_Q	181_I	0.657	0.95
79_F	98_V	0.655	0.95
127_V	174_L	0.654	0.95
43_G	66_Y	0.654	0.95
76_L	98_V	0.650	0.95
144_L	147_K	0.645	0.94
115_S	252_V	0.643	0.94
6_A	62_L	0.636	0.94
148_N	156_E	0.632	0.94
34_E	38_Q	0.631	0.94
98_V	102_G	0.631	0.94
143_S	147_K	0.628	0.94
160_A	163_E	0.625	0.94
204_T	208_I	0.623	0.93
105_F	109_E	0.622	0.93
172_E	176_A	0.621	0.93
213_V	229_C	0.620	0.93
120_V	174_L	0.619	0.93
146_R	153_L	0.616	0.93
110_A	192_D	0.615	0.93
120_V	181_I	0.614	0.93
30_K	34_E	0.613	0.93
234_E	243_R	0.613	0.93
159_A	163_E	0.613	0.93
222_K	227_A	0.613	0.93
143_S	155_G	0.609	0.93
41_P	66_Y	0.609	0.93
143_S	148_N	0.607	0.93
121_T	182_E	0.605	0.92
71_I	98_V	0.603	0.92
119_F	126_R	0.603	0.92
10_I	54_Y	0.601	0.92
57_N	139_G	0.601	0.92
32_G	39_V	0.599	0.92
165_R	169_G	0.598	0.92
74_F	248_R	0.597	0.92
186_E	189_V	0.596	0.92
115_S	250_D	0.596	0.92
245_I	258_L	0.591	0.92
145_S	151_E	0.590	0.91
124_I	174_L	0.589	0.91
31_Q	39_V	0.584	0.91
79_F	97_L	0.580	0.91
120_V	177_R	0.579	0.91
145_S	154_R	0.577	0.91
142_D	147_K	0.577	0.91
214_G	218_R	0.571	0.90
252_V	256_S	0.570	0.90
16_V	236_S	0.570	0.90
97_L	100_S	0.568	0.90
143_S	156_E	0.568	0.90
144_L	151_E	0.566	0.90
229_C	256_S	0.563	0.89
226_V	233_V	0.562	0.89
120_V	124_I	0.562	0.89
147_K	155_G	0.561	0.89
20_Q	23_Y	0.561	0.89
189_V	207_C	0.559	0.89
110_A	188_L	0.557	0.89
209_I	225_F	0.556	0.89
113_L	184_E	0.556	0.89
198_I	201_I	0.555	0.89
145_S	152_V	0.555	0.89
128_K	132_R	0.554	0.89
172_E	175_E	0.552	0.89
37_K	66_Y	0.552	0.89
33_F	58_L	0.551	0.88
76_L	94_L	0.550	0.88
130_R	133_R	0.548	0.88
182_E	204_T	0.547	0.88
239_S	242_S	0.546	0.88
239_S	243_R	0.546	0.88
150_N	158_N	0.542	0.88
212_R	229_C	0.539	0.87
183_E	187_D	0.538	0.87
112_E	134_D	0.537	0.87
38_Q	65_E	0.536	0.87
113_L	117_W	0.536	0.87
17_V	40_L	0.536	0.87
128_K	145_S	0.535	0.87
149_L	156_E	0.534	0.87
183_E	186_E	0.533	0.87
25_E	28_N	0.532	0.87
208_I	252_V	0.530	0.86
188_L	191_K	0.530	0.86
11_S	237_G	0.528	0.86
246_S	249_G	0.528	0.86
118_D	208_I	0.527	0.86
116_Q	119_F	0.527	0.86
225_F	258_L	0.524	0.86
11_S	58_L	0.522	0.86
130_R	167_L	0.522	0.86
103_S	111_K	0.521	0.86
7_G	62_L	0.520	0.85
64_K	105_F	0.518	0.85
252_V	255_S	0.518	0.85
136_I	141_R	0.516	0.85
15_L	139_G	0.514	0.85
74_F	84_G	0.513	0.85
50_S	254_R	0.513	0.85
103_S	108_S	0.513	0.85
180_E	183_E	0.513	0.85
28_N	33_F	0.512	0.85
4_P	19_F	0.512	0.85
193_S	197_T	0.510	0.84
82_I	248_R	0.509	0.84
148_N	158_N	0.509	0.84
44_C	66_Y	0.508	0.84
142_D	150_N	0.508	0.84
247_K	251_A	0.506	0.84
162_S	180_E	0.506	0.84
116_Q	127_V	0.504	0.84
11_S	55_H	0.502	0.83
143_S	151_E	0.500	0.83
234_E	239_S	0.500	0.83
189_V	192_D	0.500	0.83

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3b0xA	1	0.5808	89.9	0.923	Contact Map
2a1jA	1	0.2269	87.1	0.927	Contact Map
3psiA	1	0.8346	86	0.928	Contact Map
3psfA	1	0.8577	84.8	0.929	Contact Map
1z00B	1	0.2808	84.2	0.93	Contact Map
1keaA	2	0.65	81.4	0.932	Contact Map
1hjrA	2	0.4038	79.9	0.933	Contact Map
1vq8Y	1	0	78.8	0.933	Contact Map
2a1jB	2	0.2885	77.6	0.934	Contact Map
1nu0A	1	0.3808	72.3	0.937	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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