Q97XM6 - SULSO - GREMLIN Contacts

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Q97XM6 - Uncharacterized protein

UniProt:	Q97XM6	Sequences: MCRMLAYYGRDKDYLKKLANCLVRASQKDPLSDDIHGDGWGVAALTTNKLVYYRSHLPIFEDKDNLESIIDSLDGEVKVIIHARQASDKNLVSVYYSHPYLESNHERLLFLAHNGSVDKYKLGEMIGIDPTLMVDSELVAKYLSIYGIKEVDKLRDVTQSALNLLLLEINRKDRSSHLFYYNYYRKDKIRRKEDYYKLYLHNGAVYSSSLAYTGCEKGEEVELGKLLVLNG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	231 (208)
Sequences:	1633 (1027)
Seq/√Len:	71.2

ECOLI - YAFJ
SULSO - Q97XM6 Q97WU1 Q981E0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
43_A	110_F	8.603	1.00
222_E	225_K	4.054	1.00
76_E	79_V	4.022	1.00
80_I	112_A	3.798	1.00
6_A	178_L	3.530	1.00
147_G	158_T	3.188	1.00
147_G	150_E	3.087	1.00
6_A	165_L	2.983	1.00
82_H	98_H	2.881	1.00
132_L	137_E	2.600	1.00
96_Y	132_L	2.586	1.00
213_T	217_K	2.586	1.00
111_L	140_A	2.536	1.00
147_G	154_L	2.476	1.00
117_V	139_V	2.442	1.00
101_L	110_F	2.202	1.00
194_D	198_L	2.200	1.00
80_I	165_L	2.122	1.00
139_V	164_L	2.090	1.00
96_Y	137_E	2.022	1.00
45_L	167_L	1.984	1.00
155_R	158_T	1.982	1.00
111_L	164_L	1.892	1.00
168_E	171_R	1.844	1.00
82_H	96_Y	1.838	1.00
96_Y	134_V	1.822	1.00
68_S	101_L	1.790	1.00
4_M	165_L	1.787	1.00
140_A	144_S	1.729	1.00
171_R	179_F	1.724	1.00
150_E	154_L	1.716	1.00
123_G	127_G	1.650	0.99
196_Y	199_Y	1.615	0.99
154_L	158_T	1.613	0.99
118_D	121_K	1.608	0.99
197_K	200_L	1.600	0.99
109_L	166_L	1.589	0.99
180_Y	205_V	1.582	0.99
46_T	51_V	1.576	0.99
134_V	137_E	1.563	0.99
155_R	159_Q	1.560	0.99
29_D	59_I	1.540	0.99
45_L	110_F	1.507	0.99
113_H	136_S	1.491	0.99
25_A	29_D	1.442	0.99
193_E	198_L	1.441	0.99
42_V	79_V	1.429	0.99
185_R	220_E	1.429	0.99
3_R	8_Y	1.401	0.98
191_R	194_D	1.396	0.98
150_E	153_K	1.350	0.98
205_V	227_L	1.339	0.98
195_Y	200_L	1.321	0.98
198_L	203_G	1.312	0.97
195_Y	198_L	1.294	0.97
89_K	134_V	1.293	0.97
112_A	165_L	1.291	0.97
146_Y	149_K	1.281	0.97
56_H	97_S	1.275	0.97
148_I	152_D	1.267	0.97
194_D	202_N	1.240	0.96
80_I	167_L	1.220	0.96
143_L	166_L	1.209	0.96
139_V	154_L	1.205	0.96
196_Y	200_L	1.193	0.95
47_T	75_G	1.190	0.95
16_K	71_D	1.184	0.95
199_Y	202_N	1.182	0.95
199_Y	212_Y	1.182	0.95
86_A	89_K	1.166	0.95
149_K	153_K	1.163	0.95
51_V	72_S	1.149	0.94
29_D	40_W	1.144	0.94
78_K	178_L	1.131	0.94
55_S	62_D	1.124	0.94
15_L	42_V	1.114	0.93
18_L	73_L	1.105	0.93
27_Q	32_S	1.104	0.93
29_D	33_D	1.096	0.93
156_D	159_Q	1.089	0.93
82_H	112_A	1.077	0.92
102_E	144_S	1.077	0.92
87_S	116_S	1.054	0.91
36_H	83_A	1.045	0.91
147_G	159_Q	1.039	0.91
10_R	15_L	1.038	0.91
20_N	24_R	1.029	0.90
206_Y	218_G	1.020	0.90
8_Y	78_K	1.017	0.90
153_K	156_D	1.003	0.89
109_L	134_V	1.003	0.89
132_L	140_A	1.002	0.89
59_I	82_H	1.001	0.89
118_D	122_L	0.998	0.89
194_D	200_L	0.996	0.89
78_K	167_L	0.993	0.89
1_M	5_L	0.989	0.89
96_Y	140_A	0.986	0.88
100_Y	134_V	0.985	0.88
125_M	145_I	0.975	0.88
77_V	204_A	0.968	0.88
149_K	157_V	0.960	0.87
5_L	21_C	0.955	0.87
57_L	206_Y	0.944	0.86
76_E	167_L	0.943	0.86
85_Q	88_D	0.942	0.86
150_E	158_T	0.936	0.86
45_L	104_N	0.929	0.85
4_M	112_A	0.928	0.85
29_D	32_S	0.924	0.85
40_W	58_P	0.920	0.85
23_V	26_S	0.918	0.85
198_L	202_N	0.917	0.85
147_G	151_V	0.907	0.84
180_Y	226_L	0.904	0.84
28_K	87_S	0.900	0.83
98_H	134_V	0.897	0.83
102_E	141_K	0.894	0.83
221_V	227_L	0.891	0.83
125_M	150_E	0.891	0.83
148_I	151_V	0.891	0.83
180_Y	227_L	0.887	0.83
65_N	69_I	0.885	0.82
197_K	201_H	0.883	0.82
78_K	123_G	0.873	0.82
146_Y	219_E	0.872	0.81
51_V	76_E	0.869	0.81
11_D	77_V	0.869	0.81
123_G	138_L	0.863	0.81
191_R	195_Y	0.861	0.81
120_Y	127_G	0.860	0.81
45_L	169_I	0.852	0.80
89_K	136_S	0.850	0.80
80_I	178_L	0.840	0.79
153_K	159_Q	0.839	0.79
3_R	207_S	0.829	0.78
160_S	163_N	0.825	0.78
19_A	25_A	0.820	0.77
151_V	159_Q	0.817	0.77
63_K	67_E	0.817	0.77
193_E	196_Y	0.813	0.77
147_G	153_K	0.807	0.76
118_D	151_V	0.804	0.76
195_Y	202_N	0.802	0.76
66_L	210_L	0.802	0.76
55_S	94_V	0.802	0.76
45_L	168_E	0.801	0.76
212_Y	217_K	0.799	0.75
21_C	26_S	0.797	0.75
44_A	73_L	0.795	0.75
46_T	72_S	0.791	0.75
3_R	9_G	0.791	0.75
197_K	203_G	0.789	0.75
59_I	97_S	0.789	0.75
116_S	164_L	0.787	0.74
151_V	155_R	0.784	0.74
3_R	25_A	0.782	0.74
2_C	5_L	0.782	0.74
113_H	135_D	0.779	0.74
87_S	136_S	0.777	0.73
53_Y	65_N	0.773	0.73
119_K	123_G	0.765	0.72
187_D	220_E	0.761	0.72
150_E	155_R	0.758	0.72
155_R	185_R	0.756	0.71
97_S	185_R	0.756	0.71
200_L	203_G	0.751	0.71
163_N	206_Y	0.750	0.71
37_G	60_F	0.746	0.70
130_P	141_K	0.745	0.70
94_V	179_F	0.744	0.70
152_D	156_D	0.742	0.70
123_G	126_I	0.738	0.70
50_L	201_H	0.736	0.69
169_I	209_S	0.734	0.69
8_Y	28_K	0.734	0.69
87_S	117_V	0.734	0.69
148_I	226_L	0.728	0.68
109_L	143_L	0.727	0.68
130_P	205_V	0.720	0.68
202_N	211_A	0.716	0.67
141_K	163_N	0.713	0.67
9_G	26_S	0.711	0.67
4_M	163_N	0.708	0.66
5_L	81_I	0.707	0.66
22_L	25_A	0.706	0.66
24_R	28_K	0.700	0.65
93_S	133_M	0.695	0.65
36_H	60_F	0.695	0.65
19_A	27_Q	0.694	0.65
101_L	225_K	0.693	0.65
83_A	209_S	0.690	0.64
47_T	131_T	0.689	0.64
166_L	186_K	0.688	0.64
119_K	127_G	0.687	0.64
183_Y	224_G	0.684	0.64
121_K	149_K	0.684	0.64
152_D	155_R	0.683	0.64
1_M	4_M	0.679	0.63
128_I	131_T	0.665	0.61
26_S	208_S	0.661	0.61
39_G	114_N	0.660	0.61
67_E	71_D	0.659	0.61
44_A	53_Y	0.655	0.60
121_K	205_V	0.653	0.60
88_D	116_S	0.647	0.59
2_C	114_N	0.646	0.59
42_V	66_L	0.646	0.59
153_K	158_T	0.646	0.59
45_L	50_L	0.643	0.59
28_K	33_D	0.640	0.59
164_L	181_Y	0.639	0.58
204_A	210_L	0.637	0.58
85_Q	98_H	0.632	0.58
72_S	94_V	0.629	0.57
52_Y	101_L	0.629	0.57
161_A	185_R	0.624	0.57
151_V	158_T	0.622	0.56
44_A	76_E	0.620	0.56
55_S	97_S	0.619	0.56
116_S	161_A	0.617	0.56
53_Y	62_D	0.616	0.56
7_Y	10_R	0.614	0.55
148_I	179_F	0.614	0.55
36_H	79_V	0.613	0.55
133_M	137_E	0.612	0.55
170_N	217_K	0.611	0.55
121_K	126_I	0.605	0.54
4_M	96_Y	0.603	0.54
117_V	160_S	0.603	0.54
82_H	132_L	0.603	0.54
10_R	211_A	0.603	0.54
54_R	145_I	0.603	0.54
85_Q	90_N	0.602	0.54
148_I	155_R	0.601	0.54
25_A	208_S	0.598	0.53
21_C	25_A	0.597	0.53
47_T	77_V	0.597	0.53
29_D	35_I	0.591	0.53
18_L	189_I	0.591	0.53
36_H	114_N	0.590	0.53
15_L	19_A	0.587	0.52
43_A	76_E	0.587	0.52
55_S	72_S	0.586	0.52
5_L	19_A	0.585	0.52
4_M	82_H	0.584	0.52
45_L	65_N	0.584	0.52
148_I	219_E	0.582	0.52
99_P	115_G	0.581	0.51
40_W	182_N	0.580	0.51
3_R	150_E	0.578	0.51
36_H	85_Q	0.578	0.51
39_G	84_R	0.571	0.50
20_N	25_A	0.570	0.50
171_R	228_V	0.568	0.50
104_N	168_E	0.568	0.50
80_I	110_F	0.567	0.50
3_R	34_D	0.564	0.49
34_D	214_G	0.563	0.49
38_D	60_F	0.563	0.49
41_G	115_G	0.561	0.49
56_H	61_E	0.561	0.49
97_S	134_V	0.557	0.48
29_D	34_D	0.557	0.48
25_A	38_D	0.556	0.48
98_H	137_E	0.554	0.48
35_I	87_S	0.554	0.48
165_L	185_R	0.553	0.48
9_G	25_A	0.552	0.48
36_H	98_H	0.548	0.47
124_E	130_P	0.547	0.47
25_A	35_I	0.546	0.47
131_T	146_Y	0.546	0.47
10_R	47_T	0.546	0.47
100_Y	111_L	0.544	0.47
86_A	90_N	0.542	0.47
128_I	217_K	0.541	0.47
178_L	224_G	0.540	0.46
131_T	153_K	0.540	0.46
147_G	155_R	0.538	0.46
104_N	170_N	0.538	0.46
54_R	101_L	0.537	0.46
138_L	145_I	0.537	0.46
37_G	61_E	0.537	0.46
118_D	148_I	0.535	0.46
126_I	203_G	0.535	0.46
27_Q	35_I	0.534	0.46
125_M	149_K	0.534	0.46
19_A	23_V	0.530	0.45
132_L	144_S	0.528	0.45
38_D	61_E	0.527	0.45
109_L	184_Y	0.526	0.45
126_I	142_Y	0.525	0.45
41_G	99_P	0.522	0.44
67_E	222_E	0.521	0.44
56_H	221_V	0.520	0.44
180_Y	221_V	0.519	0.44
62_D	137_E	0.519	0.44
23_V	59_I	0.518	0.44
23_V	56_H	0.517	0.44
26_S	60_F	0.516	0.43
21_C	29_D	0.516	0.43
195_Y	199_Y	0.514	0.43
79_V	111_L	0.512	0.43
71_D	167_L	0.510	0.43
114_N	163_N	0.508	0.43
119_K	140_A	0.508	0.43
196_Y	201_H	0.507	0.42
52_Y	146_Y	0.506	0.42
55_S	213_T	0.504	0.42
121_K	219_E	0.501	0.42
97_S	184_Y	0.500	0.42

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3mdnA	4	0.7965	100	0.433	Contact Map
4zflA	5	0.8918	100	0.442	Contact Map
1te5A	2	0.9264	100	0.485	Contact Map
4amvA	2	0.8658	100	0.585	Contact Map
1ao0A	3	0.8831	99.9	0.6	Contact Map
1xffA	2	0.8658	99.9	0.606	Contact Map
1ecfA	4	0.8961	99.9	0.615	Contact Map
1ea0A	1	0.9004	99.7	0.722	Contact Map
1jgtA	2	0.7489	99.7	0.734	Contact Map
1ofdA	1	0.8831	99.7	0.735	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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