Q97XI5 - SULSO - GREMLIN Contacts

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Q97XI5 - Uncharacterized protein

UniProt:	Q97XI5	Sequences: MSSERLIDEILKNPQLISALADKVYEKLKDEIVIRKLEENTKSIQALQEAIKRHGDAIVSLQEAVKSLQEEVKRQGEAIVSLQKTVEKQGEAIVSLQEEVKRHGDAIVSLQEAVKSLQEEVKRQGEAIVSLQKTVEKQGEAIVSLQEEVKRHGDAIVSLQEAVKSLQEEVKRQGEAIVSLQEEVKKHSKAILRLAKSQKRLSIELGSFTSRAGKGLERAMLKLYKKSLELHGVDPKRVKHGNIVDTVGIIEKGRSFEVDFYETNDYIYVFEIKNFSDKDVIDQVFVRKKLFSVLYNKPLKVFVVTNYIERDVKEKLEKEGVEIIASHVID	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	330 (266)
Sequences:	6402 (5824)
Seq/√Len:	357.1

BACSU - EZRA
SULSO - Q97XI5 Q7LXD0 Q97XC5 Q97Y73 Q97XV2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
10_I	13_N	2.803	1.00
107_I	110_L	2.329	1.00
65_V	68_L	2.319	1.00
100_V	103_H	2.208	1.00
184_V	187_H	2.190	1.00
79_I	82_L	2.190	1.00
72_V	75_Q	2.183	1.00
86_V	89_Q	2.182	1.00
121_V	124_Q	2.180	1.00
135_V	138_Q	2.178	1.00
149_V	152_H	2.132	1.00
156_I	159_L	2.083	1.00
78_A	83_Q	2.008	1.00
187_H	191_I	1.966	1.00
142_I	145_L	1.949	1.00
17_I	20_L	1.919	1.00
162_A	167_Q	1.907	1.00
242_N	245_D	1.895	1.00
44_I	47_L	1.893	1.00
54_H	58_I	1.874	1.00
99_E	104_G	1.866	1.00
128_I	131_L	1.850	1.00
198_Q	201_L	1.843	1.00
51_I	54_H	1.819	1.00
37_L	40_N	1.808	1.00
170_V	173_Q	1.773	1.00
205_L	208_F	1.748	1.00
114_V	117_L	1.742	1.00
113_A	116_S	1.731	1.00
32_I	36_K	1.697	1.00
73_K	76_G	1.693	1.00
80_V	83_Q	1.675	1.00
191_I	194_L	1.675	1.00
9_E	14_P	1.669	1.00
95_S	99_E	1.649	1.00
93_I	96_L	1.638	1.00
197_S	202_S	1.632	1.00
58_I	61_L	1.624	1.00
177_I	180_L	1.613	1.00
81_S	85_T	1.607	1.00
237_R	241_G	1.577	1.00
43_S	48_Q	1.542	1.00
29_K	32_I	1.535	1.00
163_V	166_L	1.522	1.00
228_L	231_H	1.520	1.00
30_D	34_I	1.490	1.00
234_D	239_K	1.475	1.00
44_I	48_Q	1.465	1.00
16_L	21_A	1.462	1.00
78_A	81_S	1.459	1.00
60_S	64_A	1.458	1.00
55_G	59_V	1.454	1.00
57_A	62_Q	1.444	1.00
104_G	108_V	1.441	1.00
155_A	160_Q	1.427	1.00
31_E	34_I	1.416	1.00
59_V	62_Q	1.412	1.00
144_S	148_E	1.409	1.00
137_K	141_A	1.394	1.00
125_G	129_V	1.391	1.00
46_A	50_A	1.383	1.00
39_E	43_S	1.371	1.00
200_R	204_E	1.368	1.00
205_L	209_T	1.363	1.00
98_E	102_R	1.347	1.00
22_D	26_E	1.347	1.00
226_K	230_L	1.344	1.00
64_A	67_S	1.341	1.00
202_S	206_G	1.324	1.00
38_E	41_T	1.324	1.00
45_Q	48_Q	1.321	1.00
163_V	167_Q	1.302	1.00
176_A	179_S	1.300	1.00
179_S	183_E	1.296	1.00
191_I	195_A	1.294	1.00
70_E	74_R	1.290	1.00
124_Q	128_I	1.288	1.00
162_A	165_S	1.284	1.00
176_A	181_Q	1.281	1.00
102_R	106_A	1.269	1.00
106_A	109_S	1.267	1.00
150_K	154_D	1.261	1.00
221_L	224_Y	1.258	1.00
116_S	120_E	1.254	1.00
40_N	44_I	1.245	1.00
94_V	97_Q	1.242	1.00
165_S	169_E	1.240	1.00
19_A	23_K	1.240	1.00
29_K	34_I	1.232	1.00
49_E	53_R	1.218	1.00
235_P	238_V	1.217	1.00
36_K	41_T	1.216	1.00
212_A	216_L	1.212	1.00
142_I	146_Q	1.210	1.00
89_Q	93_I	1.208	1.00
196_K	200_R	1.201	1.00
123_R	127_A	1.198	1.00
16_L	19_A	1.196	1.00
133_K	137_K	1.192	1.00
64_A	69_Q	1.191	1.00
254_R	257_E	1.190	1.00
115_K	118_Q	1.182	1.00
112_E	116_S	1.178	1.00
212_A	215_G	1.176	1.00
54_H	57_A	1.176	1.00
72_V	76_G	1.174	1.00
127_A	132_Q	1.169	1.00
141_A	144_S	1.161	1.00
113_A	118_Q	1.154	1.00
43_S	46_A	1.152	1.00
122_K	125_G	1.149	1.00
99_E	102_R	1.146	1.00
197_S	200_R	1.141	1.00
17_I	24_V	1.137	1.00
207_S	211_R	1.134	1.00
139_G	143_V	1.133	1.00
21_A	25_Y	1.133	1.00
227_S	231_H	1.125	1.00
141_A	146_Q	1.123	1.00
9_E	13_N	1.120	1.00
192_L	195_A	1.119	1.00
91_E	95_S	1.119	1.00
92_A	95_S	1.117	1.00
36_K	39_E	1.113	1.00
157_V	161_E	1.112	1.00
57_A	60_S	1.111	1.00
38_E	42_K	1.102	1.00
236_K	240_H	1.101	1.00
92_A	97_Q	1.099	1.00
89_Q	92_A	1.098	1.00
129_V	132_Q	1.094	1.00
240_H	244_V	1.084	1.00
101_K	105_D	1.081	1.00
119_E	123_R	1.077	1.00
97_Q	101_K	1.073	1.00
114_V	118_Q	1.072	1.00
127_A	130_S	1.062	1.00
85_T	88_K	1.061	1.00
85_T	90_G	1.061	1.00
148_E	153_G	1.059	1.00
76_G	80_V	1.059	1.00
158_S	162_A	1.057	1.00
63_E	67_S	1.055	1.00
14_P	18_S	1.049	1.00
83_Q	87_E	1.048	1.00
195_A	199_K	1.048	1.00
105_D	109_S	1.045	1.00
183_E	188_S	1.036	1.00
204_E	207_S	1.030	1.00
13_N	16_L	1.021	1.00
134_T	139_G	1.019	1.00
236_K	239_K	1.015	1.00
234_D	237_R	1.015	1.00
111_Q	115_K	1.011	1.00
241_G	246_T	1.010	1.00
52_K	56_D	1.010	1.00
193_R	197_S	1.007	1.00
183_E	186_K	1.006	1.00
77_E	81_S	1.006	1.00
143_V	146_Q	1.004	1.00
243_I	247_V	1.002	1.00
209_T	213_G	1.001	1.00
69_Q	73_K	1.000	1.00
186_K	190_A	1.000	1.00
187_H	190_A	0.995	1.00
88_K	92_A	0.990	1.00
164_K	167_Q	0.988	1.00
160_Q	164_K	0.985	1.00
148_E	151_R	0.982	1.00
151_R	155_A	0.980	1.00
15_Q	19_A	0.979	1.00
74_R	78_A	0.977	1.00
130_S	134_T	0.975	1.00
138_Q	142_I	0.975	1.00
75_Q	78_A	0.972	1.00
22_D	25_Y	0.972	1.00
18_S	21_A	0.971	1.00
101_K	104_G	0.967	1.00
245_D	248_G	0.967	1.00
50_A	55_G	0.964	1.00
68_L	72_V	0.962	1.00
56_D	59_V	0.962	1.00
13_N	17_I	0.958	1.00
146_Q	150_K	0.955	1.00
120_E	125_G	0.954	1.00
35_R	39_E	0.950	1.00
59_V	63_E	0.941	1.00
129_V	133_K	0.939	1.00
225_K	229_E	0.939	1.00
42_K	46_A	0.939	1.00
93_I	97_Q	0.929	1.00
222_K	226_K	0.929	1.00
172_R	176_A	0.928	1.00
78_A	82_L	0.918	1.00
190_A	195_A	0.917	1.00
210_S	214_K	0.913	1.00
161_E	165_S	0.913	1.00
120_E	124_Q	0.906	1.00
12_K	16_L	0.904	1.00
182_E	186_K	0.902	1.00
45_Q	49_E	0.902	1.00
71_E	75_Q	0.892	1.00
241_G	245_D	0.889	1.00
9_E	12_K	0.887	1.00
67_S	71_E	0.885	1.00
169_E	174_G	0.882	1.00
63_E	66_K	0.880	1.00
268_Y	271_E	0.875	1.00
134_T	137_K	0.870	1.00
80_V	84_K	0.867	1.00
58_I	62_Q	0.864	1.00
136_E	139_G	0.860	1.00
66_K	69_Q	0.859	1.00
140_E	144_S	0.856	1.00
77_E	80_V	0.855	1.00
100_V	104_G	0.855	1.00
164_K	168_E	0.852	1.00
198_Q	202_S	0.851	1.00
147_E	150_K	0.850	1.00
52_K	55_G	0.850	1.00
252_K	255_S	0.850	1.00
152_H	155_A	0.844	1.00
221_L	225_K	0.844	1.00
48_Q	52_K	0.843	1.00
152_H	156_I	0.840	1.00
110_L	114_V	0.839	1.00
84_K	88_K	0.835	1.00
109_S	113_A	0.835	1.00
103_H	107_I	0.829	1.00
87_E	90_G	0.825	1.00
126_E	130_S	0.823	1.00
143_V	147_E	0.823	1.00
18_S	22_D	0.823	1.00
11_L	14_P	0.820	1.00
184_V	188_S	0.820	1.00
147_E	151_R	0.819	1.00
62_Q	66_K	0.816	1.00
37_L	41_T	0.813	1.00
86_V	90_G	0.809	1.00
203_I	207_S	0.808	1.00
87_E	91_E	0.807	1.00
162_A	166_L	0.803	1.00
50_A	54_H	0.800	1.00
30_D	33_V	0.800	1.00
173_Q	177_I	0.800	1.00
253_G	257_E	0.797	1.00
214_K	218_R	0.796	1.00
231_H	234_D	0.789	1.00
128_I	132_Q	0.786	1.00
167_Q	171_K	0.785	1.00
239_K	243_I	0.784	1.00
156_I	160_Q	0.784	1.00
118_Q	122_K	0.783	1.00
159_L	163_V	0.778	1.00
75_Q	79_I	0.777	1.00
269_V	273_K	0.777	1.00
11_L	15_Q	0.776	1.00
71_E	76_G	0.774	1.00
136_E	140_E	0.772	1.00
122_K	126_E	0.771	1.00
169_E	172_R	0.771	1.00
31_E	35_R	0.767	1.00
49_E	52_K	0.766	1.00
213_G	217_E	0.765	1.00
174_G	178_V	0.763	1.00
131_L	135_V	0.761	1.00
98_E	101_K	0.761	1.00
107_I	111_Q	0.761	1.00
230_L	234_D	0.760	1.00
66_K	70_E	0.757	1.00
192_L	196_K	0.754	1.00
199_K	202_S	0.752	1.00
271_E	275_F	0.750	1.00
261_Y	264_N	0.749	1.00
132_Q	136_E	0.748	1.00
260_F	263_T	0.747	1.00
142_I	149_V	0.746	1.00
53_R	57_A	0.745	1.00
262_E	266_Y	0.745	1.00
227_S	230_L	0.745	1.00
229_E	233_V	0.745	1.00
177_I	181_Q	0.743	1.00
234_D	238_V	0.741	1.00
175_E	179_S	0.734	1.00
189_K	193_R	0.731	1.00
91_E	94_V	0.722	0.99
90_G	94_V	0.718	0.99
235_P	239_K	0.715	0.99
229_E	232_G	0.708	0.99
204_E	209_T	0.707	0.99
226_K	229_E	0.705	0.99
34_I	38_E	0.704	0.99
188_S	191_I	0.704	0.99
120_E	123_R	0.698	0.99
79_I	83_Q	0.697	0.99
71_E	74_R	0.696	0.99
194_L	198_Q	0.694	0.99
138_Q	141_A	0.693	0.99
156_I	163_V	0.688	0.99
155_A	158_S	0.687	0.99
255_S	259_D	0.685	0.99
124_Q	127_A	0.684	0.99
50_A	53_R	0.683	0.99
206_G	209_T	0.678	0.99
73_K	77_E	0.677	0.99
223_L	227_S	0.675	0.99
171_K	174_G	0.675	0.99
247_V	251_E	0.674	0.99
84_K	87_E	0.673	0.99
244_V	247_V	0.671	0.99
106_A	111_Q	0.670	0.99
20_L	24_V	0.670	0.99
56_D	60_S	0.668	0.99
17_I	21_A	0.666	0.99
110_L	113_A	0.662	0.99
199_K	203_I	0.662	0.99
244_V	248_G	0.662	0.99
36_K	40_N	0.661	0.99
237_R	240_H	0.661	0.99
266_Y	269_V	0.659	0.99
227_S	232_G	0.656	0.99
215_G	218_R	0.656	0.99
222_K	225_K	0.655	0.99
267_I	271_E	0.655	0.99
99_E	103_H	0.652	0.99
178_V	181_Q	0.652	0.99
178_V	182_E	0.649	0.99
210_S	213_G	0.647	0.99
182_E	185_K	0.647	0.99
171_K	175_E	0.638	0.99
55_G	58_I	0.638	0.99
204_E	208_F	0.637	0.99
261_Y	265_D	0.636	0.99
256_F	260_F	0.631	0.99
242_N	246_T	0.631	0.99
96_L	100_V	0.630	0.99
190_A	193_R	0.630	0.99
265_D	269_V	0.628	0.99
58_I	65_V	0.622	0.98
51_I	55_G	0.618	0.98
266_Y	271_E	0.618	0.98
253_G	260_F	0.614	0.98
92_A	96_L	0.613	0.98
181_Q	185_K	0.613	0.98
40_N	43_S	0.613	0.98
149_V	153_G	0.612	0.98
47_L	51_I	0.612	0.98
103_H	106_A	0.611	0.98
157_V	160_Q	0.610	0.98
270_F	273_K	0.609	0.98
260_F	264_N	0.609	0.98
206_G	210_S	0.609	0.98
131_L	138_Q	0.609	0.98
185_K	188_S	0.607	0.98
135_V	139_G	0.600	0.98
235_P	242_N	0.593	0.98
104_G	107_I	0.588	0.98
41_T	44_I	0.585	0.98
24_V	27_K	0.582	0.98
68_L	71_E	0.582	0.98
208_F	211_R	0.581	0.98
166_L	170_V	0.579	0.98
41_T	45_Q	0.579	0.98
154_D	158_S	0.578	0.98
94_V	98_E	0.575	0.97
130_S	133_K	0.574	0.97
231_H	235_P	0.571	0.97
35_R	38_E	0.567	0.97
121_V	125_G	0.561	0.97
19_A	22_D	0.559	0.97
44_I	51_I	0.559	0.97
153_G	157_V	0.555	0.97
69_Q	72_V	0.554	0.97
255_S	258_V	0.553	0.97
102_R	105_D	0.551	0.97
150_K	153_G	0.550	0.97
30_D	37_L	0.542	0.96
263_T	267_I	0.540	0.96
65_V	69_Q	0.534	0.96
70_E	73_K	0.533	0.96
163_V	170_V	0.533	0.96
106_A	110_L	0.532	0.96
23_K	27_K	0.529	0.96
119_E	122_K	0.524	0.96
85_T	89_Q	0.518	0.95
10_I	14_P	0.517	0.95
170_V	174_G	0.515	0.95
185_K	189_K	0.514	0.95
259_D	262_E	0.514	0.95
180_L	184_V	0.514	0.95
33_V	36_K	0.514	0.95
240_H	243_I	0.512	0.95
132_Q	135_V	0.512	0.95
249_I	252_K	0.511	0.95
140_E	143_V	0.510	0.95
29_K	33_V	0.508	0.95
10_I	17_I	0.505	0.95
183_E	187_H	0.502	0.95
108_V	111_Q	0.500	0.94

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1i84S	2	0.2364	99.3	0.448	Contact Map
1c1gA	2	0.8576	99.1	0.499	Contact Map
2dfsA	2	0.3758	97	0.71	Contact Map
4linA	5	0.6909	97	0.71	Contact Map
4uxvA	1	0.9061	96.4	0.73	Contact Map
3o0zA	2	0.4727	96	0.739	Contact Map
2v71A	3	0.4848	95.9	0.741	Contact Map
3ojaB	1	0.3909	95.8	0.744	Contact Map
3na7A	1	0.7061	95.1	0.756	Contact Map
2efrA	2	0.4697	94.7	0.76	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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