Q97XG9 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97XG9 - First ORF in transposon ISC1491

UniProt:	Q97XG9	Sequences: MESEIKTRGFAIDVSRDKLTVAKAELVITQEKREVEVNEVREFKYDNEGIEELIKFLGEYKEGIMESTGPYFFYLHEELTEKGYKVTLINPLHLKEVFGKKTDKLDAQRLAKAFILGAVKGSYIPTGEIRELRELTRYRESLMRKITQVKNEIRKFLEMAGYKIEPFDKRGMALLEKLSRGEGLSKEERDELKEKLGRSLNDAEKLALKQLVDLLKSLEAMVKEVEDMIISKIPQPVVELSRELV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	245 (219)
Sequences:	2856 (2249)
Seq/√Len:	151.9

SULSO - Q97XG9 Q97XZ9 Q97YS4 Q97ZN4 Q97UF7 Q97X07 Q97WZ5 Q97XK2 Q97UU8 Q97WC0 Q97VS0 Q97Y59 Q97X26 Q97XM7 Q97X12 Q97X29 Q97UQ6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
64_I	114_F	5.477	1.00
22_A	107_A	3.901	1.00
176_E	216_K	3.102	1.00
63_G	84_Y	2.881	1.00
21_V	53_L	2.793	1.00
145_K	152_E	2.757	1.00
145_K	148_Q	2.752	1.00
146_I	219_E	2.653	1.00
139_R	143_M	2.524	1.00
228_M	231_S	2.521	1.00
94_L	110_L	2.500	1.00
64_I	110_L	2.444	1.00
217_S	221_M	2.227	1.00
18_K	42_E	2.215	1.00
10_F	23_K	2.196	1.00
213_D	220_A	2.162	1.00
212_V	216_K	2.151	1.00
15_S	20_T	2.117	1.00
12_I	75_L	2.028	1.00
213_D	221_M	1.983	1.00
24_A	111_A	1.933	1.00
189_R	193_K	1.932	1.00
210_Q	221_M	1.901	1.00
10_F	57_L	1.872	1.00
12_I	19_L	1.851	1.00
32_K	36_E	1.850	1.00
136_T	229_I	1.837	1.00
150_K	167_F	1.822	1.00
138_Y	142_L	1.809	1.00
65_M	86_V	1.809	1.00
16_R	158_E	1.804	1.00
147_T	151_N	1.797	1.00
143_M	146_I	1.736	1.00
153_I	208_L	1.730	1.00
95_K	98_F	1.699	1.00
78_E	82_K	1.694	1.00
15_S	18_K	1.675	1.00
46_D	49_G	1.659	1.00
20_T	42_E	1.626	1.00
41_R	56_F	1.619	1.00
206_L	228_M	1.586	1.00
214_L	217_S	1.584	1.00
213_D	217_S	1.538	1.00
92_L	96_E	1.515	1.00
164_I	171_G	1.511	1.00
44_K	49_G	1.510	1.00
226_E	229_I	1.509	1.00
11_A	111_A	1.509	1.00
188_E	191_E	1.498	1.00
132_L	229_I	1.488	1.00
22_A	108_Q	1.486	1.00
57_L	63_G	1.455	1.00
20_T	40_V	1.447	1.00
77_E	130_R	1.436	1.00
153_I	215_L	1.432	1.00
139_R	226_E	1.414	1.00
223_K	226_E	1.399	1.00
145_K	149_V	1.395	1.00
144_R	148_Q	1.391	1.00
98_F	109_R	1.348	1.00
108_Q	112_K	1.340	1.00
146_I	215_L	1.325	1.00
112_K	116_L	1.323	1.00
178_L	181_G	1.319	1.00
218_L	222_V	1.306	1.00
24_A	115_I	1.304	1.00
58_G	61_K	1.278	1.00
143_M	222_V	1.271	1.00
214_L	221_M	1.265	1.00
209_K	224_E	1.264	1.00
62_E	87_T	1.255	1.00
194_E	198_R	1.247	1.00
146_I	222_V	1.244	1.00
12_I	21_V	1.238	1.00
40_V	108_Q	1.225	1.00
146_I	150_K	1.210	1.00
68_T	71_Y	1.162	1.00
148_Q	151_N	1.156	1.00
214_L	218_L	1.155	1.00
63_G	79_L	1.147	1.00
142_L	222_V	1.135	1.00
222_V	226_E	1.119	0.99
181_G	184_L	1.105	0.99
219_E	223_K	1.089	0.99
41_R	52_E	1.081	0.99
97_V	113_A	1.079	0.99
188_E	193_K	1.077	0.99
8_R	23_K	1.073	0.99
9_G	114_F	1.070	0.99
48_E	52_E	1.067	0.99
43_F	56_F	1.063	0.99
168_D	171_G	1.061	0.99
43_F	49_G	1.061	0.99
40_V	104_K	1.057	0.99
65_M	76_H	1.053	0.99
19_L	45_Y	1.048	0.99
128_E	235_Q	1.047	0.99
224_E	228_M	1.044	0.99
101_K	106_D	1.043	0.99
143_M	147_T	1.043	0.99
193_K	197_G	1.042	0.99
15_S	19_L	1.037	0.99
54_I	84_Y	1.037	0.99
23_K	39_E	1.030	0.99
72_F	88_L	1.026	0.99
193_K	196_L	1.022	0.99
215_L	219_E	1.020	0.99
188_E	196_L	1.018	0.99
230_I	234_P	1.015	0.99
228_M	232_K	1.011	0.99
218_L	221_M	1.003	0.99
225_V	229_I	1.001	0.99
21_V	43_F	0.997	0.99
67_S	88_L	0.992	0.99
187_E	192_L	0.988	0.99
141_S	152_E	0.975	0.99
165_E	171_G	0.971	0.99
231_S	235_Q	0.964	0.98
52_E	55_K	0.963	0.98
32_K	35_V	0.961	0.98
54_I	82_K	0.954	0.98
11_A	79_L	0.954	0.98
211_L	214_L	0.954	0.98
12_I	53_L	0.952	0.98
153_I	167_F	0.951	0.98
145_K	214_L	0.950	0.98
62_E	85_K	0.949	0.98
50_I	75_L	0.943	0.98
186_K	189_R	0.940	0.98
200_L	204_E	0.938	0.98
190_D	194_E	0.933	0.98
47_N	51_E	0.914	0.98
182_E	186_K	0.911	0.98
64_I	89_I	0.910	0.98
70_P	158_E	0.910	0.98
181_G	185_S	0.907	0.98
210_Q	224_E	0.902	0.98
190_D	193_K	0.883	0.97
9_G	115_I	0.875	0.97
192_L	196_L	0.872	0.97
62_E	114_F	0.867	0.97
10_F	63_G	0.863	0.97
231_S	234_P	0.859	0.97
76_H	88_L	0.854	0.97
76_H	86_V	0.854	0.97
170_R	173_A	0.851	0.97
21_V	41_R	0.851	0.97
50_I	78_E	0.850	0.97
43_F	50_I	0.848	0.97
189_R	196_L	0.848	0.97
149_V	152_E	0.846	0.97
226_E	230_I	0.843	0.96
174_L	178_L	0.840	0.96
140_E	144_R	0.838	0.96
110_L	115_I	0.834	0.96
215_L	218_L	0.831	0.96
89_I	94_L	0.828	0.96
219_E	222_V	0.823	0.96
191_E	194_E	0.818	0.96
227_D	235_Q	0.809	0.96
93_H	96_E	0.807	0.95
19_L	43_F	0.805	0.95
75_L	79_L	0.805	0.95
187_E	193_K	0.801	0.95
152_E	155_K	0.793	0.95
71_Y	90_N	0.792	0.95
15_S	72_F	0.790	0.95
141_S	144_R	0.787	0.95
195_K	198_R	0.787	0.95
22_A	40_V	0.786	0.95
206_L	210_Q	0.786	0.95
188_E	192_L	0.786	0.95
14_V	65_M	0.785	0.95
78_E	81_E	0.784	0.95
43_F	53_L	0.783	0.95
67_S	91_P	0.782	0.95
11_A	107_A	0.780	0.95
14_V	71_Y	0.780	0.95
232_K	235_Q	0.780	0.95
222_V	229_I	0.780	0.95
221_M	224_E	0.777	0.94
151_N	155_K	0.774	0.94
212_V	215_L	0.773	0.94
216_K	220_A	0.770	0.94
208_L	212_V	0.769	0.94
49_G	52_E	0.765	0.94
216_K	223_K	0.764	0.94
32_K	38_N	0.760	0.94
48_E	194_E	0.755	0.94
67_S	102_T	0.754	0.94
110_L	113_A	0.754	0.94
15_S	89_I	0.747	0.93
149_V	153_I	0.747	0.93
89_I	119_V	0.746	0.93
149_V	211_L	0.737	0.93
130_R	134_E	0.735	0.93
65_M	88_L	0.732	0.92
167_F	171_G	0.732	0.92
20_T	104_K	0.728	0.92
187_E	191_E	0.728	0.92
210_Q	213_D	0.728	0.92
208_L	215_L	0.727	0.92
10_F	79_L	0.726	0.92
55_K	82_K	0.725	0.92
206_L	209_K	0.722	0.92
211_L	215_L	0.717	0.92
139_R	222_V	0.712	0.91
210_Q	225_V	0.709	0.91
15_S	67_S	0.708	0.91
17_D	158_E	0.707	0.91
64_I	94_L	0.707	0.91
14_V	70_P	0.704	0.91
67_S	94_L	0.697	0.91
35_V	38_N	0.695	0.90
178_L	184_L	0.694	0.90
204_E	211_L	0.692	0.90
33_R	36_E	0.692	0.90
91_P	96_E	0.682	0.90
217_S	220_A	0.679	0.89
10_F	21_V	0.677	0.89
170_R	174_L	0.674	0.89
191_E	196_L	0.672	0.89
179_S	183_G	0.666	0.88
173_A	177_K	0.664	0.88
64_I	119_V	0.661	0.88
142_L	218_L	0.661	0.88
162_Y	178_L	0.660	0.88
177_K	195_K	0.657	0.88
22_A	111_A	0.654	0.88
22_A	37_V	0.653	0.87
220_A	224_E	0.652	0.87
94_L	98_F	0.651	0.87
67_S	137_R	0.651	0.87
21_V	57_L	0.649	0.87
65_M	110_L	0.642	0.87
83_G	231_S	0.642	0.87
209_K	213_D	0.638	0.86
188_E	195_K	0.635	0.86
138_Y	141_S	0.634	0.86
174_L	181_G	0.634	0.86
203_A	206_L	0.632	0.86
65_M	72_F	0.627	0.85
210_Q	228_M	0.624	0.85
67_S	72_F	0.624	0.85
224_E	232_K	0.623	0.85
178_L	187_E	0.622	0.85
202_D	228_M	0.622	0.85
52_E	56_F	0.621	0.85
12_I	18_K	0.620	0.85
72_F	76_H	0.619	0.85
165_E	170_R	0.618	0.84
206_L	218_L	0.616	0.84
189_R	197_G	0.615	0.84
154_R	166_P	0.614	0.84
175_L	181_G	0.609	0.84
227_D	231_S	0.606	0.83
97_V	102_T	0.605	0.83
41_R	49_G	0.604	0.83
126_T	130_R	0.600	0.83
227_D	230_I	0.599	0.83
223_K	227_D	0.599	0.83
204_E	207_A	0.598	0.83
34_E	39_E	0.594	0.82
99_G	121_G	0.593	0.82
12_I	84_Y	0.592	0.82
203_A	207_A	0.591	0.82
54_I	78_E	0.591	0.82
151_N	154_R	0.590	0.82
227_D	234_P	0.589	0.82
172_M	179_S	0.586	0.81
89_I	110_L	0.582	0.81
49_G	56_F	0.582	0.81
201_N	205_K	0.582	0.81
213_D	224_E	0.580	0.81
185_S	188_E	0.578	0.80
135_L	139_R	0.574	0.80
205_K	209_K	0.571	0.80
88_L	93_H	0.570	0.79
14_V	79_L	0.569	0.79
39_E	53_L	0.569	0.79
76_H	124_I	0.567	0.79
8_R	57_L	0.567	0.79
215_L	225_V	0.567	0.79
230_I	233_I	0.567	0.79
15_S	75_L	0.566	0.79
216_K	219_E	0.565	0.79
62_E	120_K	0.564	0.79
179_S	182_E	0.564	0.79
224_E	227_D	0.562	0.78
142_L	221_M	0.557	0.78
37_V	40_V	0.555	0.78
97_V	109_R	0.555	0.78
87_T	121_G	0.554	0.78
229_I	233_I	0.551	0.77
200_L	205_K	0.546	0.76
139_R	146_I	0.545	0.76
48_E	51_E	0.545	0.76
174_L	177_K	0.544	0.76
66_E	71_Y	0.541	0.76
94_L	105_L	0.537	0.75
205_K	212_V	0.537	0.75
177_K	181_G	0.536	0.75
72_F	122_S	0.536	0.75
34_E	37_V	0.535	0.75
144_R	194_E	0.531	0.75
173_A	176_E	0.530	0.74
220_A	225_V	0.527	0.74
194_E	197_G	0.527	0.74
58_G	83_G	0.527	0.74
126_T	129_I	0.525	0.74
176_E	213_D	0.525	0.74
209_K	225_V	0.525	0.74
169_K	173_A	0.525	0.74
66_E	91_P	0.524	0.74
53_L	56_F	0.522	0.73
67_S	122_S	0.520	0.73
127_G	131_E	0.519	0.73
81_E	194_E	0.518	0.73
204_E	215_L	0.514	0.72
76_H	160_A	0.511	0.72
200_L	203_A	0.509	0.71
45_Y	162_Y	0.506	0.71
105_L	108_Q	0.503	0.71
83_G	220_A	0.503	0.71
154_R	158_E	0.502	0.70
219_E	224_E	0.501	0.70
134_E	159_M	0.500	0.70
174_L	179_S	0.500	0.70

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1hjrA	2	0.4408	96.4	0.875	Contact Map
4ep4A	2	0.5469	95.8	0.882	Contact Map
1nu0A	1	0.4204	93.2	0.896	Contact Map
1vhxA	2	0.4327	90.2	0.904	Contact Map
1iv0A	1	0.3306	73.4	0.922	Contact Map
3ifrA	2	0.7429	60.7	0.928	Contact Map
3cpeA	1	0.6735	56.9	0.93	Contact Map
3id6A	2	0.8408	53.7	0.931	Contact Map
3c6aA	1	0.649	48.9	0.933	Contact Map
3hz6A	1	0.751	48.1	0.933	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0088 seconds.