Q97XG4 - SULSO - GREMLIN Contacts

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Q97XG4 - Uncharacterized protein

UniProt:	Q97XG4	Sequences: MVFPNGFSIKTDRDNFHDILNLYLFSYKYGVDIGSNWKFDEKYNILITPSGIKFSIKGFDPVIFSETFLYDIHFIDYNLENKKIIQAGAYVGETALYYAKRGAYVYAFEPQLDCYNIALTNLKLNPELASRVVLRNWAIGEDGEIEFPNTRCNGGTSYFDSYKDRIRVRSVSISTVLEEFNISQPDILDLDIKGGEFRVINDKSIQKFSIVRIEYNTVIDNKKLGDVTYLIEKLRSYGFTKIRIYKHNELPFDLSINGVIEARK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	264 (204)
Sequences:	800 (758)
Seq/√Len:	53.0

HALSA - Q9HQP5 Q9HSW3
SULSO - Q97XG4 Q7LXF6 Q7LXE9 Q7LXE1 Q97XU3 Q7LXG2 Q97X54 Q97XT4 Q7LXF9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
192_I	199_V	5.021	1.00
115_Y	134_L	4.266	1.00
141_E	198_R	4.191	1.00
138_A	170_S	3.589	1.00
140_G	170_S	3.442	1.00
108_F	176_V	3.360	1.00
144_E	167_R	3.304	1.00
174_S	202_D	3.163	1.00
89_A	118_A	3.147	1.00
112_L	166_I	3.093	1.00
209_S	239_F	3.038	1.00
174_S	203_K	2.976	1.00
172_S	175_T	2.952	1.00
141_E	201_N	2.951	1.00
142_D	175_T	2.933	1.00
89_A	107_A	2.838	1.00
140_G	195_G	2.715	1.00
86_Q	189_D	2.646	1.00
115_Y	119_L	2.508	1.00
94_T	98_Y	2.490	1.00
87_A	139_I	2.379	1.00
115_Y	136_N	2.118	1.00
115_Y	118_A	2.028	1.00
135_R	176_V	1.987	1.00
104_Y	133_V	1.908	0.99
190_L	199_V	1.889	0.99
146_E	167_R	1.833	0.99
138_A	168_V	1.824	0.99
106_Y	135_R	1.797	0.99
142_D	171_V	1.750	0.99
111_Q	114_C	1.743	0.99
108_F	139_I	1.726	0.99
99_A	131_R	1.711	0.99
139_I	199_V	1.692	0.99
82_K	186_D	1.631	0.98
187_I	212_R	1.618	0.98
171_V	175_T	1.613	0.98
146_E	165_R	1.598	0.98
120_T	123_K	1.596	0.98
144_E	169_R	1.590	0.98
95_A	132_V	1.538	0.98
90_Y	93_E	1.530	0.97
145_I	170_S	1.514	0.97
122_L	132_V	1.497	0.97
84_I	98_Y	1.492	0.97
147_F	156_T	1.492	0.97
69_L	73_H	1.437	0.96
208_F	239_F	1.426	0.96
99_A	105_V	1.401	0.96
119_L	134_L	1.364	0.95
137_W	171_V	1.335	0.94
196_E	213_I	1.327	0.94
39_F	42_K	1.327	0.94
87_A	190_L	1.322	0.94
188_L	209_S	1.319	0.94
99_A	128_L	1.300	0.94
192_I	195_G	1.293	0.93
205_I	208_F	1.280	0.93
121_N	124_L	1.261	0.93
142_D	172_S	1.250	0.92
96_L	121_N	1.244	0.92
112_L	136_N	1.235	0.92
81_N	102_G	1.220	0.91
197_F	202_D	1.210	0.91
211_V	234_L	1.199	0.90
192_I	215_Y	1.198	0.90
110_P	136_N	1.189	0.90
66_E	73_H	1.187	0.90
87_A	199_V	1.180	0.90
202_D	209_S	1.179	0.90
137_W	169_R	1.179	0.90
232_E	236_S	1.166	0.89
85_I	108_F	1.165	0.89
108_F	135_R	1.165	0.89
186_D	209_S	1.125	0.87
110_P	138_A	1.117	0.87
197_F	201_N	1.110	0.87
107_A	118_A	1.098	0.86
140_G	143_G	1.084	0.85
67_T	73_H	1.079	0.85
205_I	209_S	1.077	0.85
188_L	211_V	1.071	0.85
122_L	134_L	1.060	0.84
90_Y	214_E	1.052	0.84
197_F	233_K	1.048	0.83
94_T	216_N	1.046	0.83
192_I	202_D	1.045	0.83
87_A	192_I	1.043	0.83
198_R	201_N	1.034	0.83
64_F	68_F	1.032	0.82
81_N	103_A	1.021	0.82
79_L	84_I	1.020	0.82
193_K	196_E	1.005	0.81
139_I	172_S	1.003	0.81
191_D	214_E	0.995	0.80
174_S	205_I	0.990	0.80
84_I	95_A	0.982	0.79
66_E	69_L	0.978	0.79
188_L	203_K	0.972	0.78
118_A	122_L	0.969	0.78
215_Y	230_L	0.963	0.78
192_I	216_N	0.960	0.78
192_I	214_E	0.957	0.77
177_L	239_F	0.950	0.77
201_N	229_Y	0.944	0.76
145_I	158_Y	0.937	0.76
153_N	158_Y	0.935	0.76
45_I	48_T	0.935	0.76
106_Y	176_V	0.918	0.74
214_E	217_T	0.903	0.73
91_V	214_E	0.899	0.73
37_W	42_K	0.897	0.73
66_E	70_Y	0.894	0.72
211_V	239_F	0.884	0.72
183_S	207_K	0.878	0.71
226_D	229_Y	0.859	0.69
199_V	202_D	0.857	0.69
149_N	156_T	0.852	0.69
140_G	198_R	0.843	0.68
108_F	172_S	0.843	0.68
135_R	139_I	0.837	0.67
215_Y	244_I	0.836	0.67
173_I	203_K	0.835	0.67
214_E	228_T	0.832	0.67
111_Q	156_T	0.829	0.67
118_A	134_L	0.822	0.66
95_A	105_V	0.810	0.65
139_I	171_V	0.808	0.65
216_N	219_I	0.803	0.64
84_I	105_V	0.796	0.63
96_L	125_N	0.791	0.63
213_I	230_L	0.790	0.63
108_F	173_I	0.784	0.62
181_N	244_I	0.783	0.62
172_S	202_D	0.777	0.62
140_G	145_I	0.775	0.61
111_Q	213_I	0.773	0.61
167_R	239_F	0.768	0.61
85_I	173_I	0.764	0.60
217_T	226_D	0.764	0.60
112_L	193_K	0.760	0.60
106_Y	133_V	0.754	0.59
83_K	106_Y	0.749	0.59
57_K	60_D	0.743	0.58
89_A	109_E	0.740	0.58
85_I	137_W	0.735	0.57
87_A	177_L	0.733	0.57
138_A	158_Y	0.731	0.57
85_I	106_Y	0.726	0.56
119_L	123_K	0.725	0.56
82_K	210_I	0.721	0.56
82_K	193_K	0.714	0.55
66_E	72_I	0.713	0.55
185_P	207_K	0.713	0.55
190_L	214_E	0.712	0.55
48_T	52_I	0.711	0.55
99_A	125_N	0.708	0.54
90_Y	114_C	0.706	0.54
81_N	101_R	0.698	0.53
190_L	196_E	0.696	0.53
192_I	196_E	0.695	0.53
42_K	50_S	0.689	0.52
48_T	54_F	0.689	0.52
39_F	50_S	0.686	0.52
143_G	170_S	0.684	0.52
138_A	145_I	0.684	0.52
51_G	56_I	0.684	0.52
87_A	172_S	0.683	0.52
190_L	217_T	0.682	0.52
170_S	195_G	0.681	0.52
202_D	216_N	0.681	0.52
38_K	45_I	0.680	0.52
111_Q	147_F	0.678	0.51
147_F	166_I	0.677	0.51
42_K	178_E	0.676	0.51
94_T	205_I	0.676	0.51
217_T	230_L	0.676	0.51
229_Y	232_E	0.676	0.51
231_I	235_R	0.675	0.51
143_G	147_F	0.675	0.51
45_I	55_S	0.673	0.51
93_E	97_Y	0.671	0.51
188_L	208_F	0.664	0.50
187_I	210_I	0.663	0.50
216_N	226_D	0.661	0.50
138_A	143_G	0.657	0.49
245_Y	248_N	0.655	0.49
114_C	118_A	0.651	0.48
73_H	189_D	0.650	0.48
63_I	72_I	0.645	0.48
54_F	96_L	0.645	0.48
91_V	153_N	0.644	0.48
88_G	194_G	0.644	0.48
136_N	169_R	0.641	0.47
232_E	235_R	0.638	0.47
201_N	236_S	0.638	0.47
38_K	51_G	0.632	0.46
133_V	244_I	0.623	0.46
209_S	242_I	0.616	0.45
173_I	188_L	0.614	0.45
174_S	204_S	0.613	0.44
39_F	43_Y	0.612	0.44
197_F	229_Y	0.612	0.44
200_I	231_I	0.610	0.44
174_S	209_S	0.610	0.44
242_I	247_H	0.610	0.44
135_R	177_L	0.610	0.44
100_K	197_F	0.607	0.44
138_A	193_K	0.604	0.44
94_T	97_Y	0.603	0.43
188_L	216_N	0.601	0.43
116_N	119_L	0.601	0.43
231_I	239_F	0.600	0.43
216_N	231_I	0.600	0.43
105_V	132_V	0.599	0.43
63_I	198_R	0.599	0.43
195_G	198_R	0.598	0.43
128_L	132_V	0.595	0.43
200_I	239_F	0.593	0.42
157_S	187_I	0.592	0.42
110_P	189_D	0.590	0.42
84_I	180_F	0.590	0.42
125_N	148_P	0.589	0.42
173_I	201_N	0.588	0.42
85_I	188_L	0.587	0.42
42_K	45_I	0.587	0.42
193_K	216_N	0.587	0.42
106_Y	161_S	0.585	0.42
39_F	48_T	0.584	0.41
98_Y	189_D	0.583	0.41
38_K	144_E	0.583	0.41
200_I	230_L	0.582	0.41
37_W	96_L	0.581	0.41
95_A	125_N	0.580	0.41
135_R	169_R	0.579	0.41
87_A	214_E	0.579	0.41
198_R	239_F	0.578	0.41
98_Y	185_P	0.577	0.41
192_I	219_I	0.575	0.41
97_Y	239_F	0.575	0.41
106_Y	190_L	0.571	0.40
40_D	43_Y	0.570	0.40
95_A	107_A	0.566	0.40
137_W	199_V	0.566	0.40
80_E	131_R	0.565	0.40
60_D	63_I	0.565	0.40
217_T	231_I	0.562	0.39
201_N	233_K	0.560	0.39
85_I	185_P	0.560	0.39
142_D	176_V	0.560	0.39
68_F	73_H	0.558	0.39
121_N	125_N	0.557	0.39
174_S	208_F	0.555	0.39
100_K	119_L	0.555	0.39
214_E	231_I	0.554	0.38
172_S	203_K	0.551	0.38
65_S	69_L	0.551	0.38
95_A	101_R	0.550	0.38
161_S	184_Q	0.549	0.38
119_L	136_N	0.548	0.38
116_N	123_K	0.546	0.38
176_V	185_P	0.545	0.38
80_E	164_D	0.543	0.37
104_Y	206_Q	0.540	0.37
209_S	217_T	0.537	0.37
217_T	239_F	0.536	0.37
142_D	169_R	0.536	0.37
100_K	204_S	0.535	0.37
79_L	98_Y	0.532	0.36
84_I	102_G	0.531	0.36
171_V	176_V	0.531	0.36
179_E	236_S	0.531	0.36
87_A	202_D	0.528	0.36
96_L	118_A	0.525	0.36
94_T	212_R	0.524	0.35
215_Y	219_I	0.522	0.35
42_K	46_L	0.521	0.35
197_F	204_S	0.521	0.35
88_G	92_G	0.521	0.35
167_R	187_I	0.520	0.35
41_E	132_V	0.520	0.35
107_A	134_L	0.520	0.35
71_D	229_Y	0.517	0.35
216_N	242_I	0.517	0.35
135_R	179_E	0.517	0.35
94_T	214_E	0.516	0.35
61_P	73_H	0.514	0.35
168_V	177_L	0.514	0.35
186_D	192_I	0.513	0.34
133_V	243_R	0.510	0.34
84_I	186_D	0.510	0.34
176_V	184_Q	0.510	0.34
89_A	121_N	0.509	0.34
84_I	208_F	0.508	0.34
211_V	228_T	0.506	0.34
84_I	196_E	0.505	0.34
158_Y	168_V	0.505	0.34
128_L	190_L	0.504	0.34
62_V	128_L	0.503	0.33
45_I	53_K	0.503	0.33
73_H	94_T	0.502	0.33
227_V	231_I	0.502	0.33
127_E	184_Q	0.501	0.33
90_Y	205_I	0.501	0.33
107_A	238_G	0.501	0.33
139_I	168_V	0.500	0.33

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2py6A	4	0.8674	100	0.49	Contact Map
3k6rA	1	0.8106	98	0.848	Contact Map
3a27A	1	0.7652	98	0.848	Contact Map
3opnA	1	0.678	97.6	0.861	Contact Map
3sm3A	2	0.697	97.5	0.861	Contact Map
2jjqA	1	0.8068	97.4	0.865	Contact Map
4ikpA	3	0.7879	97.4	0.865	Contact Map
2yxdA	4	0.6591	97.4	0.866	Contact Map
3lpmA	2	0.6856	97.3	0.867	Contact Map
3lccA	1	0.7841	97.3	0.868	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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