Q97XG0 - SULSO - GREMLIN Contacts

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Q97XG0 - Sugar phosphate nucleotydyl transferase

UniProt:	Q97XG0	Sequences: MEAVILHGGQGTRLRPLTHTGPKQLIKVAGKPISQWVLEQIRDSGIKDILLILGDNTPTRVVDYYGDGSKFGVNITYVYQGKARGLADAVYRVKDLVSEKFLVYLGDNLVFYDLRKFLSFKGSASILLAKVDNPNRFGVAVINENKVIRLVEKPKEKISDLALVGVYGFTDEIFEVIEKLKPSWRGELEITDAIQGLINEGKEVNYEIIQGWWKDTGTPKDILEANSFLLDRYAERKIEGEVENSTIDGRVILEKGAVVKNSVIRGPAYIGKDTKIINSYIGPFTSIGDLSEISGSEIEYSVILDNVRIKGVSLMDSLIGNNSTVEKGTKWQKLIIGENSSVII	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	344 (314)
Sequences:	8919 (6092)
Seq/√Len:	343.8

ECOLI - GLGC GLMU RMLA1 RMLA2 GALU GALF
BACSU - GLGC GLMU GLGD RMLA RFBF GTAB YNGB YTDA
HALSA - Q9HSZ9 Q9HSZ8 Q9HS61 Q9HQQ4 Q9HSV0
SULSO - Q97XG0 Q7LXE7 Q97ZD1 Q980H9 Q7LXK9 Q980D4 Q97VX4 Q97U06

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
298_I	301_S	3.647	1.00
130_K	160_D	3.433	1.00
314_L	317_S	3.185	1.00
121_K	125_S	3.029	1.00
299_E	315_M	3.017	1.00
303_I	309_I	2.925	1.00
300_Y	316_D	2.917	1.00
143_N	146_K	2.877	1.00
31_K	39_E	2.755	1.00
130_K	208_I	2.616	1.00
141_V	159_S	2.564	1.00
94_K	178_E	2.504	1.00
258_V	275_K	2.355	1.00
282_G	285_T	2.300	1.00
122_G	205_N	2.298	1.00
179_K	200_E	2.262	1.00
254_E	272_K	2.203	1.00
3_A	46_I	2.188	1.00
260_K	277_I	2.186	1.00
123_S	170_T	2.176	1.00
153_K	157_K	2.152	1.00
271_G	289_D	2.138	1.00
101_F	171_D	2.090	1.00
21_G	27_K	2.057	1.00
35_Q	64_Y	2.018	1.00
141_V	149_R	2.011	1.00
147_V	206_Y	1.991	1.00
117_F	127_L	1.985	1.00
3_A	41_I	1.943	1.00
276_I	279_S	1.941	1.00
303_I	307_V	1.930	1.00
307_V	323_S	1.930	1.00
100_K	170_T	1.926	1.00
48_D	76_T	1.920	1.00
143_N	148_I	1.902	1.00
128_L	206_Y	1.893	1.00
252_I	269_Y	1.892	1.00
218_T	239_E	1.885	1.00
295_G	311_G	1.858	1.00
310_K	327_K	1.841	1.00
135_N	153_K	1.835	1.00
146_K	203_E	1.818	1.00
277_I	299_E	1.784	1.00
38_L	49_I	1.768	1.00
269_Y	286_S	1.758	1.00
306_N	322_N	1.730	1.00
289_D	310_K	1.722	1.00
261_N	278_N	1.719	1.00
216_T	225_A	1.707	1.00
117_F	168_G	1.695	1.00
319_I	323_S	1.689	1.00
115_R	119_S	1.658	1.00
50_L	78_V	1.641	1.00
175_E	179_K	1.630	1.00
288_G	310_K	1.629	1.00
272_K	289_D	1.628	1.00
301_S	314_L	1.610	1.00
308_R	324_T	1.609	1.00
120_F	207_E	1.599	1.00
237_K	240_G	1.595	1.00
265_R	283_P	1.577	1.00
58_P	62_V	1.577	1.00
235_E	239_E	1.565	1.00
41_I	104_Y	1.564	1.00
84_R	88_D	1.537	1.00
319_I	325_V	1.526	1.00
151_V	158_I	1.524	1.00
34_S	65_Y	1.500	1.00
279_S	282_G	1.500	1.00
146_K	205_N	1.492	1.00
176_V	200_E	1.491	1.00
176_V	196_G	1.488	1.00
312_V	327_K	1.487	1.00
305_D	321_N	1.478	1.00
255_K	272_K	1.474	1.00
117_F	125_S	1.469	1.00
149_R	156_E	1.466	1.00
35_Q	39_E	1.455	1.00
260_K	275_K	1.454	1.00
259_V	262_S	1.452	1.00
100_K	168_G	1.436	1.00
296_S	312_V	1.425	1.00
286_S	308_R	1.415	1.00
186_G	189_E	1.402	1.00
313_S	330_K	1.386	1.00
58_P	79_Y	1.385	1.00
118_L	168_G	1.377	1.00
124_A	197_L	1.373	1.00
304_L	321_N	1.370	1.00
304_L	318_L	1.348	1.00
175_E	200_E	1.344	1.00
220_K	239_E	1.341	1.00
103_V	169_F	1.320	1.00
33_I	216_T	1.317	1.00
102_L	168_G	1.317	1.00
250_R	267_P	1.316	1.00
270_I	274_T	1.315	1.00
88_D	92_R	1.309	1.00
142_I	161_L	1.303	1.00
123_S	203_E	1.302	1.00
25_L	64_Y	1.294	1.00
298_I	303_I	1.291	1.00
53_L	58_P	1.290	1.00
267_P	284_F	1.286	1.00
297_E	313_S	1.284	1.00
307_V	319_I	1.269	1.00
248_D	251_V	1.254	1.00
271_G	274_T	1.252	1.00
88_D	91_Y	1.251	1.00
281_I	287_I	1.247	1.00
179_K	196_G	1.244	1.00
253_L	257_A	1.228	1.00
141_V	151_V	1.217	1.00
48_D	74_N	1.210	1.00
142_I	206_Y	1.200	1.00
105_L	108_N	1.192	1.00
236_R	240_G	1.191	1.00
116_K	119_S	1.188	1.00
254_E	271_G	1.187	1.00
195_Q	199_N	1.183	1.00
22_P	60_R	1.171	1.00
264_I	268_A	1.168	1.00
60_R	63_D	1.166	1.00
257_A	274_T	1.166	1.00
136_R	153_K	1.164	1.00
50_L	96_L	1.159	1.00
36_W	229_L	1.152	1.00
312_V	329_T	1.152	1.00
214_K	228_F	1.152	1.00
133_N	136_R	1.143	1.00
254_E	257_A	1.142	1.00
104_Y	114_L	1.139	1.00
128_L	140_A	1.139	1.00
112_Y	212_W	1.138	1.00
196_G	200_E	1.138	1.00
284_F	306_N	1.126	1.00
73_V	76_T	1.124	1.00
66_G	77_Y	1.124	1.00
73_V	77_Y	1.124	1.00
99_E	171_D	1.102	1.00
120_F	205_N	1.101	1.00
90_V	103_V	1.100	1.00
212_W	228_F	1.097	1.00
29_A	229_L	1.096	1.00
278_N	300_Y	1.095	1.00
289_D	305_D	1.090	1.00
54_G	83_A	1.090	1.00
261_N	279_S	1.087	1.00
91_Y	94_K	1.080	1.00
307_V	320_G	1.077	1.00
311_G	328_G	1.074	1.00
59_T	63_D	1.071	1.00
220_K	224_E	1.067	1.00
275_K	297_E	1.067	1.00
274_T	289_D	1.064	1.00
281_I	285_T	1.063	1.00
302_V	318_L	1.061	1.00
21_G	60_R	1.058	1.00
282_G	287_I	1.050	1.00
27_K	32_P	1.048	1.00
32_P	35_Q	1.048	1.00
233_Y	237_K	1.042	1.00
43_D	113_D	1.041	1.00
154_P	184_W	1.040	1.00
24_Q	106_G	1.036	1.00
139_V	162_A	1.030	1.00
28_V	226_N	1.028	1.00
83_A	88_D	1.026	1.00
133_N	153_K	1.021	1.00
128_L	161_L	1.017	1.00
218_T	221_D	1.013	1.00
184_W	189_E	1.011	1.00
62_V	79_Y	1.008	1.00
121_K	170_T	1.002	1.00
262_S	279_S	0.997	1.00
32_P	64_Y	0.992	1.00
35_Q	68_G	0.985	1.00
163_L	167_Y	0.981	1.00
132_D	160_D	0.980	1.00
75_I	78_V	0.977	1.00
34_S	61_V	0.977	1.00
314_L	319_I	0.975	1.00
124_A	169_F	0.973	1.00
214_K	224_E	0.971	1.00
172_E	175_E	0.970	1.00
262_S	276_I	0.970	1.00
87_A	180_L	0.967	1.00
42_R	74_N	0.960	1.00
131_V	162_A	0.958	1.00
116_K	120_F	0.954	1.00
176_V	197_L	0.953	1.00
268_A	281_I	0.946	1.00
145_N	208_I	0.946	1.00
74_N	77_Y	0.931	1.00
181_K	188_L	0.929	1.00
91_Y	178_E	0.922	1.00
268_A	285_T	0.919	1.00
242_V	245_S	0.915	1.00
265_R	268_A	0.912	1.00
138_G	152_E	0.909	1.00
4_V	101_F	0.908	1.00
234_A	238_I	0.904	1.00
40_Q	113_D	0.899	1.00
100_K	121_K	0.898	1.00
53_L	62_V	0.897	1.00
220_K	235_E	0.895	1.00
99_E	170_T	0.891	1.00
266_G	283_P	0.890	1.00
151_V	156_E	0.886	1.00
59_T	62_V	0.874	1.00
285_T	298_I	0.873	1.00
263_V	280_Y	0.871	1.00
175_E	178_E	0.865	1.00
11_G	23_K	0.865	1.00
121_K	168_G	0.861	1.00
126_I	147_V	0.860	1.00
34_S	51_L	0.858	1.00
253_L	259_V	0.858	1.00
283_P	305_D	0.856	1.00
54_G	88_D	0.855	1.00
147_V	204_V	0.848	1.00
169_F	193_A	0.848	1.00
309_I	315_M	0.847	1.00
313_S	328_G	0.844	1.00
53_L	77_Y	0.844	1.00
264_I	270_I	0.841	1.00
38_L	75_I	0.839	1.00
243_E	248_D	0.839	1.00
170_T	173_I	0.831	1.00
173_I	197_L	0.828	1.00
228_F	231_D	0.827	1.00
243_E	247_I	0.822	1.00
102_L	118_L	0.821	1.00
198_I	204_V	0.820	1.00
307_V	321_N	0.820	1.00
297_E	311_G	0.818	1.00
279_S	283_P	0.817	1.00
129_A	162_A	0.816	1.00
123_S	173_I	0.814	1.00
280_Y	283_P	0.813	1.00
122_G	203_E	0.811	1.00
126_I	140_A	0.804	1.00
124_A	204_V	0.802	1.00
41_I	46_I	0.801	1.00
161_L	208_I	0.797	1.00
271_G	288_G	0.793	1.00
227_S	230_L	0.792	1.00
251_V	264_I	0.791	1.00
25_L	60_R	0.790	1.00
49_I	73_V	0.788	1.00
248_D	265_R	0.788	1.00
180_L	193_A	0.787	1.00
311_G	327_K	0.786	1.00
251_V	268_A	0.784	1.00
296_S	327_K	0.777	1.00
129_A	213_W	0.776	1.00
288_G	295_G	0.773	1.00
296_S	310_K	0.770	1.00
251_V	265_R	0.769	1.00
56_N	60_R	0.769	1.00
44_S	114_L	0.767	1.00
32_P	36_W	0.765	1.00
37_V	104_Y	0.762	1.00
231_D	235_E	0.762	1.00
4_V	50_L	0.762	1.00
124_A	194_I	0.760	1.00
245_S	251_V	0.759	1.00
51_L	65_Y	0.756	1.00
5_I	41_I	0.756	1.00
267_P	272_K	0.750	1.00
196_G	199_N	0.748	1.00
149_R	195_Q	0.747	1.00
35_Q	65_Y	0.742	1.00
42_R	49_I	0.741	1.00
296_S	309_I	0.738	0.99
23_K	107_D	0.736	0.99
76_T	96_L	0.733	0.99
74_N	78_V	0.732	0.99
233_Y	236_R	0.730	0.99
13_R	23_K	0.730	0.99
242_V	246_T	0.729	0.99
250_R	253_L	0.729	0.99
22_P	56_N	0.728	0.99
244_N	261_N	0.728	0.99
113_D	116_K	0.728	0.99
248_D	266_G	0.727	0.99
105_L	165_G	0.722	0.99
270_I	276_I	0.720	0.99
309_I	312_V	0.719	0.99
131_V	160_D	0.718	0.99
251_V	254_E	0.718	0.99
254_E	269_Y	0.716	0.99
180_L	191_T	0.713	0.99
6_L	105_L	0.705	0.99
312_V	325_V	0.704	0.99
5_I	38_L	0.702	0.99
29_A	36_W	0.701	0.99
271_G	286_S	0.700	0.99
254_E	289_D	0.696	0.99
38_L	65_Y	0.692	0.99
116_K	210_Q	0.690	0.99
164_V	213_W	0.690	0.99
102_L	114_L	0.689	0.99
214_K	225_A	0.689	0.99
309_I	314_L	0.685	0.99
326_E	329_T	0.682	0.99
252_I	255_K	0.680	0.99
176_V	193_A	0.676	0.99
50_L	97_V	0.675	0.99
39_E	43_D	0.671	0.99
288_G	305_D	0.670	0.99
304_L	320_G	0.669	0.99
128_L	147_V	0.669	0.99
4_V	90_V	0.668	0.99
62_V	77_Y	0.666	0.99
279_S	298_I	0.662	0.99
84_R	188_L	0.661	0.99
254_E	274_T	0.657	0.99
310_K	313_S	0.657	0.99
140_A	147_V	0.655	0.99
148_I	198_I	0.655	0.99
312_V	328_G	0.654	0.99
40_Q	44_S	0.654	0.99
29_A	226_N	0.649	0.99
297_E	310_K	0.646	0.99
237_K	253_L	0.645	0.99
274_T	277_I	0.643	0.99
247_I	251_V	0.643	0.99
184_W	187_E	0.643	0.99
50_L	93_V	0.643	0.99
267_P	283_P	0.642	0.99
256_G	272_K	0.642	0.99
228_F	232_R	0.642	0.99
116_K	207_E	0.638	0.99
28_V	33_I	0.637	0.99
244_N	247_I	0.634	0.98
9_G	23_K	0.630	0.98
300_Y	315_M	0.629	0.98
209_I	213_W	0.628	0.98
246_T	263_V	0.628	0.98
283_P	287_I	0.628	0.98
52_I	89_A	0.627	0.98
33_I	37_V	0.627	0.98
298_I	309_I	0.627	0.98
324_T	327_K	0.625	0.98
126_I	204_V	0.624	0.98
141_V	148_I	0.622	0.98
286_S	302_V	0.619	0.98
243_E	250_R	0.615	0.98
100_K	118_L	0.613	0.98
31_K	36_W	0.613	0.98
306_N	321_N	0.610	0.98
297_E	300_Y	0.610	0.98
180_L	196_G	0.605	0.98
260_K	265_R	0.605	0.98
93_V	97_V	0.604	0.98
226_N	230_L	0.602	0.98
276_I	281_I	0.601	0.98
296_S	311_G	0.600	0.98
107_D	215_D	0.600	0.98
301_S	317_S	0.599	0.98
248_D	252_I	0.598	0.98
6_L	52_I	0.598	0.98
224_E	227_S	0.598	0.98
246_T	249_G	0.597	0.98
46_I	118_L	0.596	0.98
82_K	88_D	0.595	0.98
147_V	150_L	0.595	0.98
141_V	158_I	0.591	0.98
9_G	13_R	0.589	0.98
288_G	296_S	0.589	0.98
311_G	314_L	0.587	0.97
15_R	19_H	0.586	0.97
42_R	68_G	0.585	0.97
246_T	261_N	0.584	0.97
184_W	188_L	0.582	0.97
75_I	80_Q	0.582	0.97
125_S	207_E	0.582	0.97
242_V	260_K	0.581	0.97
111_F	166_V	0.579	0.97
3_A	44_S	0.578	0.97
8_G	52_I	0.578	0.97
176_V	179_K	0.577	0.97
50_L	76_T	0.576	0.97
47_K	74_N	0.576	0.97
24_Q	61_V	0.575	0.97
257_A	270_I	0.574	0.97
257_A	276_I	0.574	0.97
288_G	308_R	0.574	0.97
249_G	266_G	0.573	0.97
250_R	254_E	0.571	0.97
75_I	79_Y	0.570	0.97
224_E	228_F	0.570	0.97
187_E	192_D	0.569	0.97
221_D	224_E	0.569	0.97
93_V	96_L	0.568	0.97
310_K	315_M	0.566	0.97
241_E	244_N	0.565	0.97
51_L	75_I	0.565	0.97
243_E	252_I	0.565	0.97
251_V	266_G	0.565	0.97
36_W	39_E	0.565	0.97
298_I	314_L	0.564	0.97
67_D	77_Y	0.563	0.97
257_A	289_D	0.561	0.97
40_Q	43_D	0.561	0.97
125_S	168_G	0.560	0.97
299_E	313_S	0.560	0.97
91_Y	177_I	0.559	0.97
268_A	278_N	0.559	0.97
257_A	272_K	0.558	0.97
76_T	79_Y	0.558	0.97
242_V	250_R	0.558	0.97
285_T	307_V	0.557	0.97
252_I	267_P	0.555	0.96
243_E	246_T	0.552	0.96
161_L	206_Y	0.552	0.96
295_G	310_K	0.551	0.96
282_G	305_D	0.550	0.96
315_M	330_K	0.550	0.96
185_R	189_E	0.550	0.96
146_K	198_I	0.548	0.96
247_I	266_G	0.547	0.96
187_E	191_T	0.547	0.96
122_G	125_S	0.546	0.96
127_L	166_V	0.545	0.96
261_N	266_G	0.542	0.96
40_Q	114_L	0.542	0.96
136_R	221_D	0.540	0.96
7_H	51_L	0.540	0.96
259_V	264_I	0.539	0.96
320_G	323_S	0.537	0.96
311_G	324_T	0.537	0.96
62_V	66_G	0.536	0.96
99_E	172_E	0.536	0.96
94_K	97_V	0.536	0.96
229_L	233_Y	0.531	0.95
88_D	188_L	0.530	0.95
39_E	42_R	0.529	0.95
274_T	288_G	0.529	0.95
307_V	325_V	0.529	0.95
44_S	115_R	0.528	0.95
279_S	285_T	0.528	0.95
105_L	167_Y	0.527	0.95
268_A	282_G	0.527	0.95
104_Y	166_V	0.527	0.95
42_R	73_V	0.527	0.95
244_N	248_D	0.525	0.95
73_V	78_V	0.525	0.95
29_A	233_Y	0.522	0.95
10_Q	83_A	0.522	0.95
128_L	208_I	0.521	0.95
42_R	72_G	0.518	0.95
130_K	161_L	0.517	0.95
63_D	66_G	0.517	0.95
303_I	319_I	0.512	0.95
214_K	221_D	0.510	0.94
263_V	266_G	0.508	0.94
304_L	323_S	0.508	0.94
265_R	282_G	0.507	0.94
279_S	295_G	0.506	0.94
86_L	107_D	0.506	0.94
131_V	134_P	0.505	0.94
183_S	189_E	0.505	0.94
242_V	247_I	0.503	0.94
245_S	248_D	0.503	0.94
183_S	186_G	0.502	0.94
193_A	196_G	0.502	0.94
26_I	219_P	0.501	0.94
301_S	315_M	0.501	0.94
68_G	72_G	0.500	0.94

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2ggoA	3	0.9535	100	0.382	Contact Map
3brkX	2	0.9419	100	0.385	Contact Map
1yp2A	4	0.9593	100	0.4	Contact Map
4g3qA	3	0.9709	100	0.435	Contact Map
2v0hA	3	0.9593	100	0.442	Contact Map
1hm9A	3	0.9535	100	0.442	Contact Map
4fceA	3	0.9448	100	0.453	Contact Map
2icyA	1	0.9012	100	0.511	Contact Map
2i5kA	5	0.9012	100	0.534	Contact Map
3jukA	3	0.6715	100	0.535	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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