Q97XD7 - SULSO - GREMLIN Contacts

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Q97XD7 - Ubiquinone/menaquinone biosynthesis methyltransferase

UniProt:	Q97XD7	Sequences: MTNKAIKATNEELQQVYNDIPKAYDRANRFISFNQDVKWRADLVKTILKYCKRPKLILDVASGKGELSYTFKKIYKDNSNYEIILSDYAENMLKMALIKDDKVLCSFDALPFREKTFDIVMSSFALHASDNIEDVIREITRVSRKIVGFIAMGKPDSWVRRIYLSIYLKYIMPYIAVLGGAKARDFKYIYYIYERVPTNSQHKRIFEKYIDIKVYEERALNLFYFVVGFPKE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	232 (214)
Sequences:	4134 (2596)
Seq/√Len:	177.5

ECOLI - UBIE CMOA UBIG BIOC SMTA YJHP TAM
BACSU - MENG YRRT YBAJ YCGJ YXBB YQEM YODH
HALSA - Q9HR81 Q9HRX3 Q9HMT2 Q9HSK6 Q9HR63 Q9HND6 Q9HQ85 ARSM
SULSO - Q97XD7 Q7LXN7 Q97ZU8 Q97WN4 Q97YX4 Q97WT7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
86_S	105_C	3.441	1.00
198_T	201_Q	3.172	1.00
112_F	117_F	3.000	1.00
56_L	82_E	2.904	1.00
133_E	208_K	2.723	1.00
61_A	125_A	2.652	1.00
199_N	217_E	2.567	1.00
90_E	104_L	2.558	1.00
62_S	68_S	2.495	1.00
60_V	139_I	2.472	1.00
18_N	91_N	2.399	1.00
18_N	89_A	2.390	1.00
90_E	94_K	2.365	1.00
140_T	210_I	2.348	1.00
95_M	98_I	2.335	1.00
62_S	85_L	2.315	1.00
10_N	106_S	2.296	1.00
203_K	207_E	2.236	1.00
133_E	205_I	2.229	1.00
143_S	210_I	2.219	1.00
129_S	135_V	2.185	1.00
57_I	71_F	2.172	1.00
58_L	117_F	2.155	1.00
126_L	202_H	2.112	1.00
42_D	216_E	2.090	1.00
138_E	141_R	2.005	1.00
120_V	139_I	1.992	1.00
206_F	228_G	1.953	1.00
69_Y	100_D	1.949	1.00
132_I	205_I	1.915	1.00
133_E	137_R	1.890	1.00
105_C	111_P	1.870	1.00
84_I	117_F	1.846	1.00
143_S	147_V	1.838	1.00
23_A	26_R	1.821	1.00
131_N	134_D	1.785	1.00
204_R	207_E	1.775	1.00
218_R	225_F	1.762	1.00
76_K	81_Y	1.759	1.00
120_V	143_S	1.671	1.00
118_D	144_R	1.641	1.00
46_T	216_E	1.629	1.00
65_G	96_A	1.626	1.00
139_I	147_V	1.594	1.00
94_K	97_L	1.589	1.00
177_V	183_A	1.584	1.00
56_L	84_I	1.574	1.00
29_R	37_V	1.562	1.00
43_L	225_F	1.561	1.00
134_D	137_R	1.560	1.00
43_L	67_L	1.501	1.00
113_R	116_T	1.484	1.00
122_S	129_S	1.466	1.00
106_S	109_A	1.456	1.00
204_R	208_K	1.450	1.00
14_Q	18_N	1.438	1.00
203_K	215_Y	1.435	1.00
93_L	104_L	1.421	1.00
47_I	119_I	1.416	1.00
219_A	222_L	1.394	1.00
43_L	148_G	1.394	1.00
56_L	117_F	1.365	1.00
203_K	213_K	1.354	1.00
138_E	142_V	1.342	1.00
61_A	122_S	1.341	1.00
29_R	36_D	1.330	1.00
35_Q	38_K	1.330	1.00
88_Y	106_S	1.324	1.00
25_D	64_K	1.289	1.00
207_E	213_K	1.277	1.00
160_R	220_L	1.276	1.00
57_I	83_I	1.256	1.00
183_A	187_K	1.235	1.00
68_S	83_I	1.222	1.00
166_I	170_Y	1.215	1.00
200_S	215_Y	1.214	1.00
84_I	112_F	1.205	1.00
182_K	185_D	1.177	1.00
52_K	55_K	1.177	1.00
103_V	112_F	1.155	1.00
42_D	46_T	1.140	1.00
86_S	103_V	1.137	1.00
214_V	227_V	1.137	1.00
133_E	209_Y	1.124	1.00
152_M	193_Y	1.119	1.00
61_A	129_S	1.106	1.00
168_L	193_Y	1.105	1.00
109_A	134_D	1.104	1.00
154_K	198_T	1.101	1.00
58_L	120_V	1.095	1.00
139_I	143_S	1.074	1.00
36_D	40_R	1.073	1.00
45_K	74_I	1.050	1.00
57_I	119_I	1.041	1.00
68_S	85_L	1.039	1.00
30_F	179_G	1.039	1.00
174_Y	177_V	1.036	1.00
168_L	190_Y	1.032	0.99
97_L	101_D	1.021	0.99
124_F	223_F	1.019	0.99
14_Q	88_Y	1.017	0.99
14_Q	104_L	1.008	0.99
201_Q	204_R	1.003	0.99
71_F	121_M	0.995	0.99
114_E	141_R	0.994	0.99
76_K	80_N	0.991	0.99
165_S	194_E	0.984	0.99
93_L	96_A	0.977	0.99
161_R	165_S	0.976	0.99
25_D	99_K	0.971	0.99
69_Y	99_K	0.971	0.99
94_K	98_I	0.962	0.99
41_A	70_T	0.957	0.99
202_H	226_V	0.954	0.99
10_N	108_D	0.953	0.99
147_V	228_G	0.952	0.99
170_Y	174_Y	0.948	0.99
42_D	218_R	0.946	0.99
107_F	129_S	0.938	0.99
124_F	150_I	0.936	0.99
160_R	163_Y	0.935	0.99
31_I	222_L	0.931	0.99
122_S	125_A	0.921	0.99
19_D	182_K	0.915	0.99
75_Y	81_Y	0.907	0.99
148_G	227_V	0.899	0.99
60_V	86_S	0.886	0.98
120_V	142_V	0.886	0.98
22_K	95_M	0.881	0.98
42_D	225_F	0.881	0.98
157_S	162_I	0.880	0.98
58_L	142_V	0.876	0.98
98_I	102_K	0.872	0.98
66_E	99_K	0.870	0.98
35_Q	219_A	0.859	0.98
64_K	99_K	0.854	0.98
108_D	131_N	0.852	0.98
140_T	143_S	0.851	0.98
47_I	148_G	0.843	0.98
84_I	103_V	0.839	0.98
85_L	96_A	0.837	0.98
55_K	81_Y	0.835	0.98
110_L	142_V	0.834	0.98
38_K	42_D	0.830	0.98
46_T	225_F	0.828	0.98
55_K	119_I	0.824	0.97
147_V	210_I	0.819	0.97
27_A	31_I	0.819	0.97
62_S	96_A	0.815	0.97
147_V	206_F	0.810	0.97
55_K	146_I	0.808	0.97
91_N	94_K	0.805	0.97
34_N	37_V	0.802	0.97
12_E	15_Q	0.799	0.97
216_E	227_V	0.796	0.97
17_Y	127_H	0.794	0.97
98_I	101_D	0.790	0.97
26_R	30_F	0.788	0.97
146_I	227_V	0.785	0.97
60_V	120_V	0.781	0.97
56_L	116_T	0.781	0.97
90_E	97_L	0.778	0.96
158_W	162_I	0.777	0.96
169_K	194_E	0.776	0.96
39_W	128_A	0.775	0.96
159_V	162_I	0.774	0.96
123_S	150_I	0.774	0.96
108_D	134_D	0.771	0.96
124_F	128_A	0.769	0.96
75_Y	80_N	0.768	0.96
127_H	192_I	0.764	0.96
126_L	129_S	0.763	0.96
10_N	88_Y	0.760	0.96
114_E	142_V	0.741	0.95
18_N	90_E	0.740	0.95
217_E	224_Y	0.739	0.95
135_V	139_I	0.738	0.95
137_R	208_K	0.736	0.95
28_N	128_A	0.736	0.95
44_V	70_T	0.733	0.95
88_Y	108_D	0.730	0.95
131_N	137_R	0.727	0.95
137_R	209_Y	0.726	0.95
125_A	128_A	0.723	0.95
56_L	144_R	0.720	0.95
86_S	110_L	0.717	0.94
36_D	39_W	0.716	0.94
75_Y	83_I	0.715	0.94
124_F	127_H	0.714	0.94
65_G	100_D	0.711	0.94
35_Q	223_F	0.707	0.94
126_L	136_I	0.707	0.94
70_T	74_I	0.703	0.94
69_Y	73_K	0.703	0.94
187_K	190_Y	0.700	0.94
86_S	112_F	0.700	0.94
201_Q	208_K	0.698	0.94
11_E	14_Q	0.697	0.94
29_R	66_E	0.693	0.93
58_L	112_F	0.692	0.93
218_R	223_F	0.688	0.93
127_H	151_A	0.686	0.93
153_G	224_Y	0.684	0.93
205_I	208_K	0.683	0.93
41_A	45_K	0.682	0.93
38_K	41_A	0.679	0.93
35_Q	222_L	0.677	0.93
46_T	214_V	0.675	0.92
75_Y	223_F	0.674	0.92
87_D	92_M	0.673	0.92
140_T	209_Y	0.671	0.92
32_S	168_L	0.669	0.92
70_T	73_K	0.666	0.92
162_I	166_I	0.665	0.92
128_A	192_I	0.665	0.92
136_I	209_Y	0.660	0.92
31_I	152_M	0.660	0.92
10_N	130_D	0.659	0.92
69_Y	101_D	0.657	0.91
111_P	138_E	0.656	0.91
103_V	111_P	0.651	0.91
94_K	113_R	0.649	0.91
17_Y	128_A	0.647	0.91
46_T	227_V	0.639	0.90
71_F	75_Y	0.638	0.90
174_Y	183_A	0.637	0.90
42_D	45_K	0.633	0.90
166_I	171_I	0.632	0.90
40_R	67_L	0.631	0.90
174_Y	178_L	0.628	0.89
64_K	92_M	0.627	0.89
199_N	226_V	0.624	0.89
61_A	121_M	0.623	0.89
167_Y	171_I	0.623	0.89
58_L	86_S	0.623	0.89
157_S	220_L	0.622	0.89
14_Q	91_N	0.621	0.89
196_V	202_H	0.621	0.89
44_V	67_L	0.620	0.89
128_A	186_F	0.618	0.89
28_N	36_D	0.616	0.89
202_H	206_F	0.614	0.88
44_V	71_F	0.612	0.88
17_Y	20_I	0.609	0.88
54_P	81_Y	0.608	0.88
48_L	52_K	0.608	0.88
31_I	172_M	0.606	0.88
171_I	175_I	0.606	0.88
54_P	75_Y	0.605	0.88
61_A	88_Y	0.604	0.88
126_L	135_V	0.602	0.87
22_K	98_I	0.598	0.87
149_F	202_H	0.594	0.87
80_N	83_I	0.592	0.87
27_A	123_S	0.591	0.86
172_M	176_A	0.589	0.86
171_I	174_Y	0.588	0.86
175_I	179_G	0.586	0.86
205_I	209_Y	0.586	0.86
35_Q	39_W	0.585	0.86
67_L	70_T	0.585	0.86
28_N	32_S	0.585	0.86
206_F	210_I	0.584	0.86
180_G	185_D	0.581	0.86
32_S	36_D	0.580	0.85
127_H	150_I	0.579	0.85
64_K	176_A	0.577	0.85
29_R	40_R	0.576	0.85
11_E	227_V	0.575	0.85
159_V	163_Y	0.573	0.85
218_R	222_L	0.573	0.85
14_Q	90_E	0.573	0.85
200_S	207_E	0.572	0.85
110_L	138_E	0.571	0.85
11_E	15_Q	0.566	0.84
154_K	161_R	0.566	0.84
86_S	104_L	0.564	0.84
56_L	118_D	0.562	0.84
126_L	132_I	0.561	0.84
128_A	188_Y	0.561	0.84
122_S	126_L	0.557	0.83
149_F	206_F	0.557	0.83
128_A	151_A	0.555	0.83
113_R	214_V	0.554	0.83
199_N	224_Y	0.554	0.83
136_I	206_F	0.554	0.83
108_D	130_D	0.553	0.83
207_E	211_D	0.553	0.83
212_I	216_E	0.549	0.82
28_N	127_H	0.547	0.82
152_M	222_L	0.546	0.82
138_E	144_R	0.545	0.82
94_K	204_R	0.545	0.82
168_L	172_M	0.541	0.81
186_F	189_I	0.540	0.81
123_S	152_M	0.538	0.81
199_N	215_Y	0.535	0.81
40_R	124_F	0.534	0.80
190_Y	194_E	0.529	0.80
67_L	123_S	0.528	0.80
32_S	152_M	0.527	0.80
176_A	180_G	0.527	0.80
71_F	76_K	0.527	0.80
124_F	168_L	0.526	0.79
60_V	107_F	0.524	0.79
87_D	93_L	0.523	0.79
206_F	209_Y	0.523	0.79
36_D	128_A	0.519	0.79
53_R	80_N	0.518	0.78
126_L	149_F	0.516	0.78
200_S	204_R	0.515	0.78
125_A	135_V	0.514	0.78
82_E	116_T	0.509	0.77
136_I	149_F	0.509	0.77
47_I	71_F	0.509	0.77
213_K	228_G	0.508	0.77
84_I	116_T	0.505	0.77
176_A	189_I	0.505	0.77
149_F	226_V	0.504	0.77
133_E	140_T	0.501	0.76
44_V	74_I	0.500	0.76

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4obxA	2	0.9009	100	0.4	Contact Map
3dtnA	2	0.9181	99.9	0.52	Contact Map
4pneA	2	0.8534	99.9	0.523	Contact Map
2o57A	2	0.8578	99.9	0.53	Contact Map
4azsA	6	0.8664	99.9	0.535	Contact Map
2yqzA	1	0.8578	99.9	0.538	Contact Map
3l8dA	2	0.7543	99.9	0.543	Contact Map
3bkxA	2	0.8922	99.9	0.544	Contact Map
1y8cA	1	0.9052	99.9	0.548	Contact Map
4kdcA	1	0.819	99.9	0.549	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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