Q97XB5 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97XB5 - First ORF in transposon ISC1904

UniProt:	Q97XB5	Sequences: MLRPKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDVERLMGIIRKRKVILYARVSSSTQKDDLVNQVKYLEEQVKEYDQVITDIGSKLNMKRKGFLKLLRMILNNEVSRVVVAYPDRLVRFGFEILEEVCKAHGCEIVVINQEDKEEELVEDLVSILVSFSGKLYGMRSHKYEKVKKCVEELKN	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	192 (183)
Sequences:	482 (339)
Seq/√Len:	25.1

SULSO - Q97XB5 Q97YH2 Q97U52 Q97U67 Q97YI6 Q97XI0 Q97YU0 Q97UQ9 Q97YX0 Q97XQ1 Q97XZ4 Q97X40 Q97Z60 Q97X25 Q97WZ6 Q97Y49

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
56_V	117_R	4.081	1.00
60_A	78_L	4.053	1.00
82_V	119_V	3.580	1.00
117_R	144_E	3.313	1.00
58_L	148_I	2.670	0.99
7_A	11_L	2.665	0.99
103_F	126_L	2.632	0.99
110_I	138_C	2.557	0.99
91_D	102_G	2.398	0.98
17_T	21_Y	2.372	0.98
13_I	21_Y	2.301	0.98
5_K	9_Q	2.249	0.97
135_E	139_K	2.245	0.97
85_Y	146_V	2.178	0.97
18_L	39_F	2.172	0.97
106_L	115_V	2.125	0.96
16_A	19_R	2.077	0.96
96_L	129_F	1.939	0.94
22_V	37_W	1.928	0.94
55_K	109_M	1.915	0.94
98_M	132_E	1.887	0.93
111_L	141_H	1.874	0.93
2_L	7_A	1.858	0.93
75_V	88_V	1.849	0.92
3_R	34_S	1.756	0.90
77_Y	121_A	1.750	0.90
131_F	145_I	1.747	0.90
119_V	132_E	1.744	0.90
75_V	90_T	1.733	0.90
138_C	143_C	1.696	0.89
87_Q	109_M	1.694	0.89
58_L	78_L	1.691	0.88
110_I	115_V	1.679	0.88
58_L	88_V	1.640	0.87
22_V	29_P	1.620	0.86
109_M	114_E	1.559	0.84
110_I	118_V	1.558	0.84
89_I	102_G	1.554	0.84
166_V	177_S	1.523	0.82
131_F	147_V	1.501	0.82
72_V	76_K	1.493	0.81
4_P	19_R	1.470	0.80
12_G	142_G	1.457	0.80
127_V	131_F	1.443	0.79
98_M	167_S	1.439	0.79
57_I	75_V	1.393	0.76
155_E	159_E	1.382	0.76
167_S	170_G	1.368	0.75
96_L	130_G	1.343	0.74
40_R	43_D	1.343	0.74
26_Y	33_Q	1.340	0.73
31_I	37_W	1.329	0.73
4_P	18_L	1.326	0.73
16_A	24_K	1.325	0.73
138_C	172_L	1.319	0.72
110_I	120_V	1.308	0.72
7_A	27_I	1.305	0.71
17_T	20_E	1.284	0.70
122_Y	159_E	1.282	0.70
166_V	170_G	1.262	0.69
56_V	144_E	1.262	0.69
27_I	30_V	1.254	0.68
8_C	13_I	1.244	0.68
70_D	73_N	1.227	0.67
7_A	44_V	1.211	0.66
8_C	15_Y	1.211	0.66
89_I	118_V	1.207	0.65
119_V	146_V	1.203	0.65
121_A	178_H	1.169	0.63
170_G	175_M	1.165	0.62
64_S	67_Q	1.161	0.62
58_L	82_V	1.157	0.62
20_E	23_K	1.147	0.61
91_D	167_S	1.145	0.61
22_V	27_I	1.141	0.61
22_V	39_F	1.137	0.61
14_S	20_E	1.131	0.60
15_Y	19_R	1.131	0.60
62_V	67_Q	1.111	0.59
159_E	170_G	1.083	0.57
95_K	126_L	1.079	0.56
131_F	134_L	1.062	0.55
62_V	71_L	1.034	0.53
170_G	177_S	1.033	0.53
43_D	46_R	1.031	0.53
85_Y	148_I	1.027	0.53
67_Q	70_D	1.020	0.52
78_L	148_I	1.015	0.52
164_I	174_G	1.014	0.52
27_I	134_L	1.010	0.51
26_Y	34_S	1.007	0.51
91_D	121_A	1.004	0.51
89_I	106_L	1.002	0.51
4_P	29_P	0.997	0.51
117_R	146_V	0.994	0.50
3_R	38_R	0.990	0.50
173_Y	176_R	0.988	0.50
2_L	38_R	0.987	0.50
76_K	79_E	0.985	0.50
57_I	89_I	0.980	0.49
22_V	31_I	0.965	0.48
13_I	20_E	0.946	0.47
98_M	127_V	0.940	0.46
56_V	119_V	0.931	0.46
155_E	158_V	0.922	0.45
11_L	18_L	0.919	0.45
28_K	43_D	0.918	0.45
8_C	18_L	0.918	0.45
75_V	107_L	0.911	0.44
161_L	165_L	0.910	0.44
72_V	75_V	0.906	0.44
138_C	169_S	0.905	0.44
7_A	18_L	0.903	0.44
157_L	166_V	0.900	0.44
56_V	93_G	0.893	0.43
14_S	172_L	0.889	0.43
85_Y	121_A	0.888	0.43
127_V	134_L	0.885	0.42
77_Y	149_N	0.882	0.42
95_K	103_F	0.877	0.42
166_V	178_H	0.876	0.42
19_R	39_F	0.866	0.41
18_L	22_V	0.860	0.41
3_R	33_Q	0.856	0.40
4_P	15_Y	0.855	0.40
108_R	140_A	0.846	0.40
8_C	171_K	0.842	0.39
156_E	168_F	0.840	0.39
2_L	11_L	0.839	0.39
19_R	22_V	0.828	0.38
54_R	142_G	0.826	0.38
158_V	161_L	0.823	0.38
181_E	185_K	0.813	0.37
148_I	154_E	0.811	0.37
42_E	73_N	0.810	0.37
153_K	175_M	0.805	0.37
177_S	183_V	0.803	0.37
129_F	160_D	0.802	0.37
63_S	67_Q	0.801	0.37
171_K	175_M	0.800	0.37
110_I	143_C	0.796	0.36
19_R	31_I	0.791	0.36
30_V	38_R	0.790	0.36
82_V	85_Y	0.788	0.36
134_L	138_C	0.787	0.36
78_L	143_C	0.786	0.36
55_K	87_Q	0.774	0.35
5_K	34_S	0.773	0.35
93_G	163_S	0.771	0.35
84_E	119_V	0.768	0.34
100_R	127_V	0.767	0.34
81_Q	85_Y	0.763	0.34
39_F	43_D	0.763	0.34
7_A	38_R	0.760	0.34
68_K	179_K	0.757	0.34
160_D	174_G	0.754	0.34
70_D	121_A	0.743	0.33
44_V	118_V	0.735	0.32
81_Q	146_V	0.732	0.32
48_M	108_R	0.730	0.32
157_L	160_D	0.725	0.32
19_R	36_K	0.724	0.32
13_I	31_I	0.723	0.32
76_K	80_E	0.721	0.31
103_F	127_V	0.718	0.31
130_G	146_V	0.715	0.31
92_I	100_R	0.703	0.30
4_P	7_A	0.703	0.30
118_V	145_I	0.695	0.30
19_R	37_W	0.686	0.29
67_Q	73_N	0.685	0.29
96_L	133_I	0.684	0.29
97_N	128_R	0.681	0.29
56_V	87_Q	0.679	0.29
97_N	141_H	0.671	0.28
27_I	43_D	0.670	0.28
64_S	73_N	0.667	0.28
41_E	49_G	0.666	0.28
99_K	171_K	0.665	0.28
54_R	143_C	0.664	0.28
161_L	174_G	0.664	0.28
22_V	32_L	0.660	0.28
81_Q	149_N	0.660	0.28
63_S	128_R	0.658	0.28
147_V	165_L	0.654	0.27
120_V	147_V	0.653	0.27
139_K	171_K	0.651	0.27
73_N	162_V	0.647	0.27
92_I	145_I	0.646	0.27
119_V	134_L	0.639	0.27
161_L	164_I	0.638	0.26
56_V	116_S	0.637	0.26
107_L	146_V	0.636	0.26
51_I	147_V	0.632	0.26
137_V	140_A	0.631	0.26
3_R	36_K	0.630	0.26
14_S	22_V	0.625	0.26
30_V	43_D	0.625	0.26
64_S	174_G	0.625	0.26
121_A	166_V	0.623	0.26
9_Q	68_K	0.617	0.25
12_G	129_F	0.616	0.25
33_Q	113_N	0.616	0.25
15_Y	37_W	0.615	0.25
119_V	136_E	0.613	0.25
6_E	43_D	0.612	0.25
160_D	164_I	0.605	0.25
110_I	147_V	0.602	0.24
85_Y	117_R	0.601	0.24
6_E	157_L	0.594	0.24
107_L	111_L	0.594	0.24
129_F	174_G	0.590	0.24
73_N	76_K	0.589	0.24
157_L	168_F	0.588	0.24
99_K	141_H	0.587	0.24
93_G	144_E	0.587	0.24
77_Y	91_D	0.583	0.23
77_Y	163_S	0.582	0.23
79_E	88_V	0.580	0.23
135_E	152_D	0.579	0.23
103_F	167_S	0.576	0.23
118_V	147_V	0.573	0.23
77_Y	178_H	0.570	0.23
161_L	168_F	0.570	0.23
129_F	164_I	0.569	0.23
54_R	112_N	0.566	0.23
177_S	180_Y	0.563	0.22
57_I	150_Q	0.561	0.22
34_S	113_N	0.561	0.22
98_M	118_V	0.557	0.22
149_N	153_K	0.556	0.22
6_E	146_V	0.554	0.22
170_G	178_H	0.553	0.22
22_V	34_S	0.553	0.22
93_G	97_N	0.549	0.22
110_I	145_I	0.549	0.22
57_I	106_L	0.549	0.22
23_K	101_K	0.548	0.22
120_V	145_I	0.547	0.22
128_R	173_Y	0.546	0.22
8_C	12_G	0.545	0.22
135_E	145_I	0.545	0.22
91_D	98_M	0.545	0.22
39_F	167_S	0.543	0.21
169_S	175_M	0.541	0.21
13_I	16_A	0.537	0.21
8_C	103_F	0.535	0.21
55_K	116_S	0.535	0.21
145_I	148_I	0.534	0.21
45_E	48_M	0.528	0.21
81_Q	148_I	0.527	0.21
97_N	106_L	0.526	0.21
106_L	138_C	0.525	0.21
130_G	169_S	0.524	0.21
63_S	129_F	0.523	0.20
10_R	90_T	0.523	0.20
126_L	133_I	0.523	0.20
103_F	116_S	0.521	0.20
2_L	22_V	0.520	0.20
118_V	183_V	0.519	0.20
6_E	10_R	0.519	0.20
48_M	51_I	0.519	0.20
2_L	13_I	0.519	0.20
6_E	57_I	0.515	0.20
16_A	26_Y	0.513	0.20
118_V	126_L	0.508	0.20
165_L	169_S	0.506	0.20
48_M	114_E	0.504	0.20
107_L	118_V	0.502	0.20
53_K	57_I	0.502	0.20
91_D	145_I	0.501	0.19
170_G	174_G	0.501	0.19
5_K	25_G	0.500	0.19
5_K	19_R	0.500	0.19

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3ilxA	2	0.7188	100	0.651	Contact Map
3lhkA	2	0.7292	100	0.654	Contact Map
3g13A	2	0.7292	99.8	0.733	Contact Map
3bvpA	4	0.6458	99.8	0.741	Contact Map
4bqqA	2	0.6979	99.8	0.743	Contact Map
2mhcA	1	0.5625	99.8	0.743	Contact Map
3guvA	2	0.7031	99.8	0.744	Contact Map
2gm5A	4	0.6302	99.8	0.754	Contact Map
1gdtA	2	0.6875	99.7	0.759	Contact Map
3pkzA	4	0.5833	99.7	0.762	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0076 seconds.