Y1861 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Y1861 - UPF0273 protein SSO1861

UniProt:	Q97X93	Sequences: MKRVKTYIPGLDEILYGGIPERHIVLVSGGPGTGKSILGKQFLYNGLTKGEGGVFIALEEHPVSVRRSFEHFKWDVRKYEREGKFAIIDTFTGGIGNVAQREKYVVKSIDDVKELSENIRAAIKDINATRIVVDSVSTLYLTKPAMARSIVMQLKRVISGLGCTAIFVSQVSVGERGFGGPGVEHAVDGIIRLDLDEVEGVMYRSIIIWKMRDTKISMVRHPMDITDNGIIVQWDKYLKISNWSVSIQPLPENEISQMKKAVEEAEKEVEVKVEGKEEEE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	280 (218)
Sequences:	8609 (4743)
Seq/√Len:	321.2

ECOLI - DNAB RECA
BACSU - YORI DNAC RECA
HALSA - Q9HP98 Q9HNX8 RADB RADA GVPD2
SULSO - Y1861 Q97VZ8 Q97WB6 RADA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
52_G	129_T	3.777	1.00
174_G	177_G	3.699	1.00
5_K	12_D	3.349	1.00
51_E	129_T	3.305	1.00
46_G	130_R	2.918	1.00
6_T	19_I	2.863	1.00
43_L	132_V	2.783	1.00
39_G	168_V	2.702	1.00
21_E	162_G	2.481	1.00
9_P	232_V	2.442	1.00
43_L	53_G	2.426	1.00
54_V	122_A	2.323	1.00
24_I	155_K	2.316	1.00
23_H	64_S	2.268	1.00
192_R	209_W	2.265	1.00
7_Y	12_D	2.199	1.00
75_D	78_K	2.172	1.00
119_I	131_I	2.160	1.00
39_G	132_V	2.134	1.00
25_V	189_G	2.119	1.00
21_E	129_T	2.055	1.00
15_L	189_G	2.033	1.00
151_V	186_A	2.032	1.00
11_L	191_I	1.985	1.00
197_E	202_M	1.969	1.00
26_L	187_V	1.927	1.00
124_K	161_L	1.912	1.00
224_D	231_I	1.882	1.00
29_G	193_L	1.780	1.00
45_N	49_K	1.733	1.00
158_I	165_A	1.699	1.00
78_K	89_D	1.690	1.00
123_I	131_I	1.680	1.00
19_I	42_F	1.668	1.00
211_M	214_T	1.659	1.00
40_K	69_F	1.651	1.00
131_I	165_A	1.638	1.00
10_G	13_E	1.635	1.00
32_G	213_D	1.635	1.00
45_N	48_T	1.618	1.00
123_I	127_N	1.616	1.00
14_I	217_S	1.606	1.00
131_I	163_C	1.598	1.00
52_G	127_N	1.583	1.00
44_Y	48_T	1.581	1.00
203_Y	220_R	1.573	1.00
226_T	231_I	1.546	1.00
132_V	166_I	1.531	1.00
54_V	128_A	1.525	1.00
33_T	198_V	1.521	1.00
130_R	166_I	1.506	1.00
157_V	161_L	1.497	1.00
19_I	166_I	1.494	1.00
191_I	206_I	1.471	1.00
122_A	125_D	1.458	1.00
222_P	233_Q	1.432	1.00
189_G	211_M	1.421	1.00
38_L	42_F	1.420	1.00
43_L	55_F	1.412	1.00
121_A	125_D	1.380	1.00
88_I	92_T	1.370	1.00
9_P	13_E	1.355	1.00
6_T	12_D	1.353	1.00
193_L	206_I	1.343	1.00
44_Y	73_K	1.335	1.00
46_G	53_G	1.300	1.00
29_G	33_T	1.293	1.00
25_V	164_T	1.293	1.00
11_L	15_L	1.279	1.00
151_V	167_F	1.253	1.00
122_A	126_I	1.241	1.00
119_I	161_L	1.224	1.00
24_I	151_V	1.216	1.00
143_K	146_M	1.210	1.00
46_G	51_E	1.205	1.00
33_T	199_E	1.204	1.00
59_E	170_Q	1.195	1.00
40_K	65_V	1.195	1.00
112_V	153_Q	1.186	1.00
19_I	164_T	1.167	1.00
54_V	119_I	1.160	1.00
203_Y	222_P	1.160	1.00
130_R	164_T	1.157	1.00
57_A	65_V	1.155	1.00
143_K	179_G	1.144	1.00
14_I	208_I	1.139	1.00
22_R	162_G	1.137	1.00
205_S	220_R	1.124	1.00
148_R	182_G	1.102	1.00
137_S	169_S	1.101	1.00
123_I	128_A	1.090	1.00
194_D	199_E	1.087	1.00
89_D	92_T	1.086	1.00
27_V	38_L	1.082	1.00
118_N	121_A	1.078	1.00
43_L	47_L	1.068	1.00
115_L	139_L	1.065	1.00
47_L	53_G	1.063	1.00
187_V	190_I	1.062	1.00
181_P	184_E	1.054	1.00
44_Y	72_F	1.045	1.00
10_G	232_V	1.045	1.00
32_G	210_K	1.044	1.00
51_E	130_R	1.027	1.00
36_S	65_V	1.021	1.00
211_M	215_K	1.021	1.00
20_P	23_H	1.018	1.00
37_I	68_S	1.013	1.00
77_R	81_R	1.008	1.00
38_L	206_I	1.005	1.00
8_I	232_V	1.001	1.00
153_Q	156_R	0.996	1.00
32_G	216_I	0.989	1.00
127_N	161_L	0.982	1.00
77_R	82_E	0.978	1.00
55_F	132_V	0.977	1.00
23_H	213_D	0.977	1.00
157_V	163_C	0.974	1.00
173_V	181_P	0.970	1.00
64_S	68_S	0.964	1.00
41_Q	45_N	0.960	1.00
90_T	93_G	0.959	1.00
38_L	193_L	0.958	1.00
87_I	92_T	0.957	1.00
26_L	183_V	0.955	1.00
110_D	114_E	0.946	1.00
11_L	208_I	0.943	1.00
194_D	207_I	0.940	1.00
228_N	231_I	0.939	1.00
37_I	225_I	0.935	1.00
224_D	227_D	0.934	1.00
144_P	148_R	0.934	1.00
66_R	70_E	0.934	1.00
8_I	221_H	0.932	1.00
86_A	89_D	0.919	1.00
42_F	46_G	0.916	1.00
42_F	130_R	0.910	1.00
58_L	138_T	0.909	1.00
53_G	130_R	0.907	1.00
27_V	191_I	0.905	1.00
61_H	64_S	0.905	1.00
8_I	41_Q	0.895	1.00
40_K	55_F	0.893	1.00
62_P	66_R	0.892	1.00
8_I	12_D	0.892	1.00
152_M	156_R	0.891	1.00
36_S	40_K	0.887	1.00
60_E	212_R	0.886	1.00
24_I	154_L	0.884	1.00
149_S	153_Q	0.872	1.00
54_V	131_I	0.868	1.00
116_S	153_Q	0.847	1.00
123_I	162_G	0.847	1.00
154_L	165_A	0.839	1.00
26_L	190_I	0.837	1.00
136_V	183_V	0.833	1.00
20_P	211_M	0.833	1.00
196_D	205_S	0.830	1.00
156_R	159_S	0.828	1.00
53_G	132_V	0.827	1.00
52_G	126_I	0.822	1.00
119_I	123_I	0.818	1.00
178_F	181_P	0.817	1.00
19_I	25_V	0.815	1.00
120_R	157_V	0.809	1.00
191_I	208_I	0.808	1.00
135_S	168_V	0.808	1.00
193_L	204_R	0.807	1.00
151_V	183_V	0.806	1.00
11_L	206_I	0.795	1.00
14_I	211_M	0.794	1.00
172_S	175_E	0.794	1.00
10_G	235_D	0.793	1.00
110_D	115_L	0.792	1.00
170_Q	185_H	0.787	1.00
42_F	45_N	0.787	1.00
14_I	221_H	0.784	1.00
224_D	229_G	0.781	1.00
204_R	230_I	0.781	1.00
120_R	153_Q	0.777	1.00
115_L	118_N	0.776	1.00
15_L	18_G	0.775	1.00
56_I	131_I	0.772	1.00
3_R	214_T	0.770	1.00
196_D	200_G	0.768	1.00
17_G	82_E	0.766	1.00
68_S	213_D	0.743	0.99
24_I	167_F	0.742	0.99
119_I	165_A	0.742	0.99
38_L	230_I	0.742	0.99
27_V	166_I	0.738	0.99
70_E	77_R	0.738	0.99
4_V	46_G	0.738	0.99
111_D	114_E	0.736	0.99
148_R	152_M	0.735	0.99
85_F	93_G	0.734	0.99
203_Y	233_Q	0.723	0.99
225_I	229_G	0.714	0.99
20_P	189_G	0.710	0.99
123_I	126_I	0.710	0.99
144_P	182_G	0.708	0.99
231_I	234_W	0.705	0.99
37_I	228_N	0.703	0.99
59_E	212_R	0.702	0.99
87_I	90_T	0.701	0.99
19_I	130_R	0.700	0.99
17_G	20_P	0.699	0.99
41_Q	44_Y	0.697	0.99
30_G	176_R	0.696	0.99
178_F	185_H	0.695	0.99
39_G	55_F	0.693	0.99
209_W	216_I	0.690	0.99
71_H	79_Y	0.684	0.99
133_V	139_L	0.682	0.99
147_A	180_G	0.680	0.99
88_I	91_F	0.675	0.99
21_E	51_E	0.672	0.99
87_I	91_F	0.670	0.99
120_R	124_K	0.658	0.98
75_D	226_T	0.650	0.98
64_S	213_D	0.649	0.98
39_G	166_I	0.649	0.98
78_K	84_K	0.647	0.98
156_R	160_G	0.644	0.98
4_V	164_T	0.643	0.98
107_K	110_D	0.642	0.98
30_G	33_T	0.642	0.98
78_K	82_E	0.642	0.98
5_K	49_K	0.640	0.98
22_R	61_H	0.640	0.98
33_T	204_R	0.637	0.98
70_E	93_G	0.637	0.98
155_K	167_F	0.636	0.98
42_F	166_I	0.634	0.98
108_S	111_D	0.631	0.98
14_I	219_V	0.622	0.98
115_L	133_V	0.619	0.98
133_V	154_L	0.616	0.98
28_S	192_R	0.613	0.98
157_V	165_A	0.611	0.98
30_G	171_V	0.607	0.97
30_G	181_P	0.606	0.97
44_Y	69_F	0.602	0.97
193_L	230_I	0.601	0.97
57_A	169_S	0.597	0.97
137_S	179_G	0.595	0.97
31_P	187_V	0.594	0.97
67_R	70_E	0.593	0.97
111_D	115_L	0.593	0.97
41_Q	72_F	0.592	0.97
142_T	149_S	0.590	0.97
204_R	225_I	0.590	0.97
78_K	86_A	0.590	0.97
23_H	188_D	0.586	0.97
113_K	153_Q	0.584	0.97
37_I	41_Q	0.582	0.97
171_V	178_F	0.581	0.97
25_V	191_I	0.577	0.97
119_I	128_A	0.575	0.96
30_G	173_V	0.568	0.96
157_V	160_G	0.568	0.96
170_Q	173_V	0.567	0.96
50_G	129_T	0.567	0.96
206_I	221_H	0.565	0.96
23_H	189_G	0.563	0.96
12_D	45_N	0.563	0.96
179_G	183_V	0.561	0.96
171_V	181_P	0.559	0.96
68_S	72_F	0.559	0.96
36_S	213_D	0.558	0.96
155_K	158_I	0.558	0.96
224_D	233_Q	0.555	0.96
5_K	11_L	0.555	0.96
135_S	138_T	0.554	0.96
140_Y	156_R	0.553	0.96
76_V	228_N	0.553	0.96
141_L	149_S	0.551	0.96
196_D	201_V	0.551	0.96
195_L	202_M	0.550	0.95
56_I	119_I	0.549	0.95
16_Y	215_K	0.546	0.95
188_D	212_R	0.546	0.95
15_L	191_I	0.545	0.95
172_S	178_F	0.544	0.95
158_I	164_T	0.543	0.95
129_T	164_T	0.543	0.95
21_E	164_T	0.541	0.95
81_R	211_M	0.540	0.95
47_L	50_G	0.539	0.95
47_L	79_Y	0.538	0.95
52_G	128_A	0.537	0.95
86_A	126_I	0.536	0.95
222_P	225_I	0.534	0.95
85_F	89_D	0.533	0.95
206_I	219_V	0.533	0.95
136_V	150_I	0.532	0.95
3_R	20_P	0.531	0.95
184_E	190_I	0.530	0.95
120_R	161_L	0.529	0.94
116_S	160_G	0.528	0.94
10_G	219_V	0.528	0.94
47_L	85_F	0.526	0.94
67_R	124_K	0.526	0.94
112_V	115_L	0.523	0.94
116_S	120_R	0.523	0.94
144_P	172_S	0.522	0.94
8_I	45_N	0.522	0.94
10_G	221_H	0.522	0.94
135_S	170_Q	0.521	0.94
181_P	185_H	0.521	0.94
172_S	190_I	0.519	0.94
173_V	184_E	0.519	0.94
3_R	17_G	0.518	0.94
194_D	197_E	0.515	0.94
85_F	92_T	0.514	0.94
7_Y	45_N	0.510	0.93
44_Y	74_W	0.509	0.93
113_K	119_I	0.508	0.93
15_L	208_I	0.507	0.93
19_I	46_G	0.506	0.93
204_R	229_G	0.505	0.93
196_D	199_E	0.504	0.93
24_I	165_A	0.504	0.93
194_D	205_S	0.502	0.93
59_E	135_S	0.501	0.93
12_D	232_V	0.500	0.93
20_P	81_R	0.500	0.93

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3bgwA	3	0.8286	100	0.345	Contact Map
4nmnA	3	0.8286	100	0.365	Contact Map
2q6tA	1	0.8107	100	0.366	Contact Map
3bs4A	1	0.7964	100	0.386	Contact Map
2dr3A	3	0.875	100	0.395	Contact Map
2r6aA	5	0.8143	100	0.422	Contact Map
1n0wA	1	0.6964	100	0.43	Contact Map
3bh0A	1	0.825	100	0.431	Contact Map
3ldaA	1	0.7107	100	0.436	Contact Map
2cvhA	1	0.7393	100	0.438	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0094 seconds.