Q97X87 - SULSO - GREMLIN Contacts

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Q97X87 - Uncharacterized protein

UniProt:	Q97X87	Sequences: MLKSPFEATILIEEHPCEVMKIISSTGLKGVVDNVKLGDNTTDHIVLFEKEVQKDDLIKLKSHSTKVLRLNDNKIWVRTYGCAVCKILYTSNVVVEKIKVVRERTLLYTLLIPNTMALKEFLASLISQDIEFTVLSTSEISSNELTDRQMEILKLAYKMGYFDDDRRVTLTELAKQLGISTPTLEEILRRALRKVVKFYLDKVR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	204 (193)
Sequences:	1872 (1476)
Seq/√Len:	106.2

HALSA - Q9HR58 Q9HSM9 Q9HSR5 Q9HPS7 O54637 Q9HQD9 DMSR Q9HQU9
SULSO - Q97X87 Q97YL7 Q97WR0 Q97YT8 Q97Y14 Q97UD7 Q7LXI8 Q97ZX5 Q97UC0 Q97ZB6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
168_V	173_L	4.365	1.00
162_F	192_L	4.268	1.00
155_L	159_M	3.966	1.00
152_I	177_L	3.431	1.00
93_V	112_I	3.363	1.00
159_M	173_L	3.228	1.00
88_L	93_V	3.180	1.00
183_T	187_I	3.147	1.00
180_S	183_T	3.140	1.00
157_Y	197_K	2.992	1.00
159_M	176_Q	2.966	1.00
148_R	187_I	2.867	1.00
155_L	173_L	2.740	1.00
163_D	167_R	2.651	1.00
168_V	172_E	2.603	1.00
169_T	172_E	2.573	1.00
23_I	104_R	2.444	1.00
148_R	152_I	2.378	1.00
170_L	184_L	2.374	1.00
148_R	151_E	2.212	1.00
164_D	185_E	2.036	1.00
152_I	187_I	1.950	1.00
150_M	154_K	1.943	1.00
11_L	105_T	1.926	1.00
96_E	111_L	1.915	1.00
179_I	184_L	1.841	1.00
173_L	184_L	1.807	1.00
22_I	63_H	1.796	1.00
181_T	185_E	1.770	1.00
170_L	185_E	1.734	1.00
114_N	117_A	1.711	1.00
166_R	189_R	1.710	1.00
52_V	55_D	1.678	1.00
196_V	199_Y	1.652	1.00
168_V	176_Q	1.628	1.00
187_I	190_R	1.625	1.00
153_L	196_V	1.595	1.00
142_S	199_Y	1.562	1.00
172_E	175_K	1.480	1.00
157_Y	200_L	1.479	1.00
30_G	48_F	1.473	1.00
152_I	179_I	1.435	1.00
152_I	173_L	1.417	1.00
11_L	133_T	1.402	1.00
8_A	118_L	1.367	1.00
33_D	47_L	1.325	0.99
66_K	168_V	1.320	0.99
98_I	162_F	1.294	0.99
160_G	167_R	1.269	0.99
68_L	76_W	1.267	0.99
57_L	77_V	1.263	0.99
173_L	177_L	1.260	0.99
164_D	186_E	1.251	0.99
162_F	188_L	1.245	0.99
145_L	191_A	1.238	0.99
159_M	168_V	1.233	0.99
11_L	135_L	1.223	0.99
187_I	194_K	1.216	0.99
152_I	184_L	1.209	0.99
186_E	190_R	1.205	0.99
10_I	122_L	1.196	0.99
120_E	123_A	1.182	0.99
161_Y	166_R	1.168	0.99
86_K	90_T	1.158	0.98
164_D	182_P	1.155	0.98
174_A	184_L	1.148	0.98
182_P	186_E	1.144	0.98
54_K	58_I	1.144	0.98
196_V	200_L	1.140	0.98
170_L	187_I	1.136	0.98
193_R	197_K	1.128	0.98
48_F	56_D	1.123	0.98
112_I	133_T	1.114	0.98
171_T	181_T	1.098	0.98
183_T	186_E	1.094	0.98
175_K	178_G	1.087	0.98
117_A	120_E	1.074	0.98
154_K	158_K	1.072	0.97
10_I	110_L	1.055	0.97
111_L	162_F	1.051	0.97
153_L	162_F	1.049	0.97
183_T	191_A	1.047	0.97
177_L	184_L	1.036	0.97
8_A	11_L	1.033	0.97
157_Y	162_F	1.027	0.97
32_V	46_V	1.022	0.97
107_L	135_L	1.009	0.96
60_L	190_R	1.008	0.96
93_V	97_K	0.995	0.96
164_D	189_R	0.994	0.96
60_L	65_T	0.992	0.96
64_S	67_V	0.981	0.96
170_L	181_T	0.969	0.95
16_P	179_I	0.965	0.95
74_K	147_D	0.953	0.95
53_Q	57_L	0.951	0.95
67_V	77_V	0.949	0.95
53_Q	56_D	0.933	0.94
52_V	63_H	0.932	0.94
195_V	199_Y	0.918	0.94
152_I	191_A	0.918	0.94
95_V	110_L	0.910	0.94
195_V	198_F	0.902	0.93
162_F	170_L	0.901	0.93
144_E	198_F	0.901	0.93
32_V	35_V	0.898	0.93
55_D	58_I	0.894	0.93
125_L	130_I	0.877	0.92
188_L	192_L	0.872	0.92
148_R	186_E	0.864	0.92
32_V	111_L	0.863	0.92
92_N	124_S	0.861	0.92
122_L	132_F	0.861	0.92
170_L	183_T	0.853	0.91
67_V	74_K	0.850	0.91
161_Y	188_L	0.845	0.91
164_D	187_I	0.836	0.90
17_C	23_I	0.833	0.90
183_T	188_L	0.833	0.90
89_Y	173_L	0.826	0.90
23_I	105_T	0.821	0.90
83_A	86_K	0.820	0.90
112_I	162_F	0.817	0.89
180_S	189_R	0.812	0.89
53_Q	75_I	0.810	0.89
155_L	176_Q	0.809	0.89
10_I	108_Y	0.799	0.88
64_S	129_D	0.797	0.88
56_D	140_I	0.795	0.88
27_G	129_D	0.795	0.88
149_Q	194_K	0.794	0.88
181_T	190_R	0.791	0.88
179_I	182_P	0.788	0.88
161_Y	170_L	0.787	0.88
151_E	155_L	0.786	0.87
123_A	127_S	0.780	0.87
163_D	193_R	0.779	0.87
81_G	88_L	0.776	0.87
51_E	62_S	0.772	0.87
93_V	96_E	0.770	0.86
8_A	12_I	0.767	0.86
13_E	20_M	0.767	0.86
137_T	161_Y	0.766	0.86
17_C	20_M	0.764	0.86
18_E	22_I	0.763	0.86
162_F	191_A	0.760	0.86
20_M	23_I	0.757	0.85
122_L	183_T	0.755	0.85
134_V	137_T	0.750	0.85
56_D	59_K	0.749	0.85
23_I	101_V	0.746	0.85
81_G	162_F	0.744	0.84
98_I	112_I	0.743	0.84
155_L	177_L	0.741	0.84
164_D	171_T	0.741	0.84
55_D	77_V	0.739	0.84
73_N	80_Y	0.736	0.84
16_P	46_V	0.734	0.84
43_D	105_T	0.727	0.83
183_T	190_R	0.727	0.83
115_T	137_T	0.723	0.83
115_T	180_S	0.722	0.83
32_V	63_H	0.720	0.83
101_V	106_L	0.710	0.82
47_L	76_W	0.704	0.81
82_C	162_F	0.701	0.81
120_E	167_R	0.700	0.81
49_E	74_K	0.700	0.81
26_T	51_E	0.698	0.81
43_D	135_L	0.695	0.80
121_F	181_T	0.695	0.80
136_S	173_L	0.690	0.80
82_C	169_T	0.687	0.79
9_T	107_L	0.686	0.79
171_T	189_R	0.683	0.79
191_A	196_V	0.682	0.79
164_D	193_R	0.682	0.79
190_R	195_V	0.681	0.79
143_N	199_Y	0.680	0.79
153_L	200_L	0.680	0.79
96_E	109_T	0.679	0.79
44_H	95_V	0.677	0.78
37_L	108_Y	0.673	0.78
51_E	176_Q	0.671	0.78
87_I	90_T	0.668	0.78
119_K	122_L	0.666	0.77
88_L	91_S	0.664	0.77
21_K	135_L	0.662	0.77
53_Q	77_V	0.659	0.77
32_V	115_T	0.659	0.77
190_R	193_R	0.659	0.77
151_E	184_L	0.656	0.76
10_I	186_E	0.653	0.76
65_T	92_N	0.652	0.76
85_C	184_L	0.651	0.76
49_E	55_D	0.650	0.76
23_I	103_E	0.648	0.75
94_V	111_L	0.647	0.75
17_C	84_V	0.645	0.75
30_G	38_G	0.644	0.75
78_R	132_F	0.643	0.75
71_N	74_K	0.642	0.75
151_E	154_K	0.642	0.75
79_T	142_S	0.640	0.75
95_V	120_E	0.637	0.74
67_V	75_I	0.636	0.74
28_L	50_K	0.631	0.73
151_E	179_I	0.627	0.73
69_R	74_K	0.627	0.73
154_K	200_L	0.626	0.73
17_C	106_L	0.624	0.73
24_S	31_V	0.623	0.73
88_L	110_L	0.622	0.72
168_V	184_L	0.622	0.72
21_K	105_T	0.620	0.72
121_F	186_E	0.614	0.71
71_N	76_W	0.604	0.70
65_T	77_V	0.601	0.70
7_E	138_S	0.598	0.69
72_D	135_L	0.595	0.69
30_G	146_T	0.593	0.69
160_G	163_D	0.591	0.69
8_A	115_T	0.590	0.68
97_K	162_F	0.588	0.68
25_S	200_L	0.586	0.68
28_L	150_M	0.586	0.68
64_S	74_K	0.584	0.68
73_N	78_R	0.584	0.68
50_K	116_M	0.583	0.68
155_L	168_V	0.583	0.68
113_P	176_Q	0.580	0.67
18_E	34_N	0.580	0.67
172_E	177_L	0.579	0.67
130_I	138_S	0.578	0.67
33_D	76_W	0.578	0.67
16_P	80_Y	0.578	0.67
30_G	190_R	0.577	0.67
110_L	114_N	0.576	0.67
166_R	195_V	0.572	0.66
24_S	104_R	0.568	0.66
50_K	56_D	0.566	0.65
69_R	177_L	0.563	0.65
102_R	105_T	0.562	0.65
19_V	106_L	0.557	0.64
14_E	17_C	0.554	0.64
160_G	185_E	0.554	0.64
68_L	72_D	0.551	0.63
170_L	191_A	0.550	0.63
137_T	171_T	0.550	0.63
15_H	20_M	0.549	0.63
82_C	88_L	0.549	0.63
8_A	110_L	0.549	0.63
14_E	18_E	0.548	0.63
31_V	34_N	0.547	0.63
21_K	24_S	0.547	0.63
150_M	198_F	0.547	0.63
65_T	68_L	0.546	0.62
22_I	26_T	0.545	0.62
124_S	128_Q	0.544	0.62
171_T	175_K	0.542	0.62
35_V	126_I	0.542	0.62
15_H	18_E	0.540	0.62
85_C	146_T	0.540	0.62
72_D	109_T	0.537	0.61
41_T	195_V	0.537	0.61
61_K	133_T	0.536	0.61
97_K	177_L	0.534	0.61
110_L	121_F	0.532	0.61
161_Y	195_V	0.532	0.61
85_C	153_L	0.530	0.60
54_K	57_L	0.528	0.60
10_I	134_V	0.527	0.60
165_D	189_R	0.525	0.60
37_L	42_T	0.520	0.59
107_L	174_A	0.519	0.59
51_E	114_N	0.519	0.59
62_S	73_N	0.519	0.59
32_V	37_L	0.518	0.58
74_K	195_V	0.518	0.58
53_Q	74_K	0.514	0.58
30_G	46_V	0.514	0.58
26_T	59_K	0.513	0.58
91_S	124_S	0.511	0.57
81_G	120_E	0.511	0.57
69_R	72_D	0.505	0.57
12_I	80_Y	0.504	0.56
177_L	185_E	0.504	0.56
161_Y	186_E	0.502	0.56
91_S	117_A	0.500	0.56
32_V	36_K	0.500	0.56

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1s7oA	3	0.3431	97.6	0.84	Contact Map
1ku3A	1	0.299	97.5	0.842	Contact Map
4wszA	2	0.2794	97.5	0.843	Contact Map
1x3uA	1	0.3333	97.3	0.848	Contact Map
1je8A	2	0.2843	97.2	0.849	Contact Map
2o8xA	7	0.299	97.2	0.85	Contact Map
1fseA	2	0.2892	97.2	0.85	Contact Map
1xsvA	2	0.3431	97.2	0.85	Contact Map
3c57A	2	0.25	97.1	0.853	Contact Map
4g6dA	1	0.3039	97.1	0.853	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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