GREMLIN Database
Q97X72 - Terminal quinol oxidase, subunit, putative (DoxD-like)
UniProt: Q97X72 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 173 (159)
Sequences: 100 (58)
Seq/√Len: 4.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
105_L143_V3.3350.76
89_I109_G2.9280.65
78_D95_I2.6670.57
94_M142_F2.5900.55
16_L138_A2.5070.52
19_T22_L2.4730.51
15_M33_I2.4210.50
11_K169_Y2.3100.46
98_F156_L2.2700.45
166_G169_Y2.1160.40
20_L77_Y2.1020.40
93_F144_F2.0700.39
94_M138_A2.0510.38
63_K156_L1.9930.37
36_P96_I1.9730.36
43_S155_I1.8960.34
24_F111_A1.8840.34
47_V77_Y1.8400.32
13_L145_T1.8090.32
37_A42_N1.7260.29
65_M86_I1.7040.29
99_L144_F1.6810.28
44_S93_F1.6240.27
95_I155_I1.6230.27
75_L112_W1.6000.26
164_K169_Y1.5920.26
96_I159_K1.5570.25
9_T15_M1.5560.25
155_I164_K1.5520.25
36_P42_N1.5360.25
70_L105_L1.5230.24
48_G54_F1.5150.24
26_S54_F1.5010.24
20_L95_I1.4980.24
154_Y158_K1.4870.24
9_T68_S1.4840.24
86_I102_L1.4580.23
66_L117_A1.4480.23
116_L143_V1.4380.23
18_V95_I1.4370.23
65_M89_I1.4350.22
67_E71_L1.3980.22
31_R119_G1.3840.21
99_L164_K1.3810.21
133_S137_A1.3690.21
27_A84_T1.3520.21
109_G140_F1.3480.21
28_F46_Y1.3310.20
54_F130_Q1.3300.20
54_F131_I1.3300.20
135_E139_A1.2650.19
72_N89_I1.2490.19
14_P142_F1.2370.18
32_A37_A1.2140.18
42_N147_S1.2060.18
33_I96_I1.1970.18
115_G132_A1.1900.18
142_F147_S1.1880.18
76_L124_T1.1780.17
43_S94_M1.1600.17
108_A168_Y1.1520.17
142_F158_K1.1430.17
103_S123_S1.1340.17
155_I158_K1.0790.16
109_G149_W1.0710.16
14_P150_L1.0520.15
26_S84_T1.0460.15
82_L145_T1.0380.15
66_L107_L1.0360.15
27_A115_G1.0300.15
99_L106_V1.0300.15
40_D141_M1.0240.15
144_F155_I1.0210.15
112_W121_L1.0210.15
51_L139_A1.0200.15
99_L143_V1.0180.15
19_T69_I1.0130.15
86_I105_L1.0080.15
27_A114_I1.0070.15
82_L105_L1.0040.14
24_F143_V1.0020.14
88_A159_K0.9980.14
152_I160_S0.9970.14
86_I136_G0.9930.14
114_I131_I0.9870.14
114_I130_Q0.9870.14
124_T129_W0.9810.14
81_I152_I0.9760.14
86_I150_L0.9730.14
99_L133_S0.9710.14
68_S99_L0.9680.14
82_L102_L0.9670.14
75_L81_I0.9670.14
69_I110_M0.9670.14
37_A98_F0.9640.14
43_S142_F0.9460.14
82_L163_I0.9420.14
27_A131_I0.9400.14
27_A130_Q0.9400.14
46_Y104_G0.9300.13
33_I159_K0.9270.13
28_F114_I0.9230.13
19_T110_M0.9080.13
76_L119_G0.9080.13
60_S93_F0.9070.13
74_S157_A0.9010.13
43_S59_W0.8900.13
137_A147_S0.8900.13
15_M149_W0.8900.13
141_M145_T0.8880.13
72_N138_A0.8860.13
43_S93_F0.8850.13
75_L147_S0.8850.13
156_L160_S0.8820.13
45_A53_T0.8810.13
29_I57_H0.8800.13
48_G131_I0.8780.13
48_G130_Q0.8780.13
24_F107_L0.8760.13
25_F114_I0.8730.13
80_I150_L0.8710.13
99_L105_L0.8650.12
67_E102_L0.8610.12
63_K89_I0.8560.12
115_G131_I0.8270.12
115_G130_Q0.8270.12
98_F160_S0.8250.12
121_L138_A0.8240.12
65_M147_S0.8230.12
149_W159_K0.8210.12
52_I139_A0.8170.12
89_I140_F0.8090.12
69_I168_Y0.8040.12
57_H131_I0.8010.12
57_H130_Q0.8010.12
119_G146_G0.7960.12
95_I154_Y0.7960.12
15_M78_D0.7930.12
152_I158_K0.7900.11
81_I88_A0.7860.11
113_G130_Q0.7840.11
113_G131_I0.7840.11
65_M109_G0.7840.11
26_S151_S0.7840.11
82_L158_K0.7820.11
48_G114_I0.7790.11
54_F114_I0.7780.11
44_S157_A0.7760.11
141_M159_K0.7730.11
152_I155_I0.7660.11
44_S142_F0.7660.11
81_I136_G0.7650.11
77_Y95_I0.7630.11
163_I168_Y0.7580.11
43_S82_L0.7530.11
48_G55_L0.7440.11
150_L165_I0.7440.11
12_F145_T0.7360.11
95_I107_L0.7320.11
14_P19_T0.7280.11
29_I49_G0.7150.11
31_R76_L0.7030.10
99_L158_K0.7020.10
73_P84_T0.7010.10
9_T16_L0.6970.10
151_S168_Y0.6940.10
51_L117_A0.6920.10
108_A148_R0.6900.10
60_S95_I0.6850.10
23_M47_V0.6730.10
108_A147_S0.6720.10
26_S88_A0.6710.10
137_A140_F0.6680.10
52_I135_E0.6660.10
25_F131_I0.6640.10
25_F130_Q0.6640.10
19_T35_V0.6640.10
21_G100_T0.6640.10
106_V116_L0.6560.10
72_N94_M0.6510.10
36_P100_T0.6450.10
27_A117_A0.6440.10
109_G148_R0.6430.10
22_L95_I0.6420.10
96_I102_L0.6370.10
68_S81_I0.6360.10
22_L134_V0.6350.10
24_F123_S0.6330.10
26_S114_I0.6300.10
156_L159_K0.6300.10
96_I106_V0.6290.10
112_W140_F0.6180.09
106_V159_K0.6150.09
11_K137_A0.6130.09
85_A106_V0.6120.09
27_A52_I0.6080.09
95_I111_A0.6070.09
54_F113_G0.6020.09
52_I115_G0.6000.09
70_L74_S0.5970.09
114_I133_S0.5940.09
19_T66_L0.5870.09
32_A47_V0.5870.09
24_F70_L0.5820.09
105_L109_G0.5790.09
60_S116_L0.5770.09
31_R146_G0.5720.09
22_L86_I0.5700.09
102_L106_V0.5650.09
12_F40_D0.5640.09
27_A88_A0.5600.09
60_S111_A0.5590.09
152_I168_Y0.5560.09
126_V135_E0.5530.09
67_E96_I0.5530.09
158_K161_K0.5530.09
147_S158_K0.5500.09
156_L161_K0.5480.09
148_R167_K0.5470.09
65_M79_F0.5450.09
45_A49_G0.5370.09
11_K164_K0.5370.09
43_S150_L0.5340.09
12_F159_K0.5330.09
31_R110_M0.5310.09
68_S143_V0.5220.09
41_P124_T0.5170.08
65_M167_K0.5140.08
82_L165_I0.5100.08
152_I165_I0.5090.08
96_I105_L0.5080.08
29_I134_V0.5050.08
72_N82_L0.5030.08
40_D43_S0.5030.08
79_F159_K0.5020.08
26_S131_I0.5010.08
26_S130_Q0.5010.08
82_L155_I0.5000.08
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2m7gA 1 0.3526 6.8 0.97 Contact Map
3tpkA 1 0.1965 6.5 0.97 Contact Map
3sokA 1 0.4624 3.7 0.974 Contact Map
3ogkQ 1 0.0751 3.3 0.974 Contact Map
2aw2A 1 0.2428 2.7 0.976 Contact Map
2wzlA 1 0.3295 1.9 0.977 Contact Map
4hgmA 1 0.1965 1.9 0.977 Contact Map
4jvpA 2 0.2312 1.8 0.978 Contact Map
3r0mA 1 0.2023 1.8 0.978 Contact Map
3wcaA 1 0.3526 1.7 0.978 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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