Q97X72 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97X72 - Terminal quinol oxidase, subunit, putative (DoxD-like)

UniProt:	Q97X72	Sequences: MAQVTIEQTQKFLPMLRVTLGLMFFSAFIRRAINVPAKLDPNSSAYVGGKLITFLPHAWSPIKGMLESILLNPSLLYDFIILFTAIEAIFGLFMIIGFLTRLSGLVLAGMAWGIGLAAGWLGSTCVDEWQIASVEGAAAFMFVFTGSRWLSIDYILAKKSKGIKIGKYYIPLW	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	173 (159)
Sequences:	100 (58)
Seq/√Len:	4.6

SULSO - Q97X72 Q97XJ3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
105_L	143_V	3.335	0.76
89_I	109_G	2.928	0.65
78_D	95_I	2.667	0.57
94_M	142_F	2.590	0.55
16_L	138_A	2.507	0.52
19_T	22_L	2.473	0.51
15_M	33_I	2.421	0.50
11_K	169_Y	2.310	0.46
98_F	156_L	2.270	0.45
166_G	169_Y	2.116	0.40
20_L	77_Y	2.102	0.40
93_F	144_F	2.070	0.39
94_M	138_A	2.051	0.38
63_K	156_L	1.993	0.37
36_P	96_I	1.973	0.36
43_S	155_I	1.896	0.34
24_F	111_A	1.884	0.34
47_V	77_Y	1.840	0.32
13_L	145_T	1.809	0.32
37_A	42_N	1.726	0.29
65_M	86_I	1.704	0.29
99_L	144_F	1.681	0.28
44_S	93_F	1.624	0.27
95_I	155_I	1.623	0.27
75_L	112_W	1.600	0.26
164_K	169_Y	1.592	0.26
96_I	159_K	1.557	0.25
9_T	15_M	1.556	0.25
155_I	164_K	1.552	0.25
36_P	42_N	1.536	0.25
70_L	105_L	1.523	0.24
48_G	54_F	1.515	0.24
26_S	54_F	1.501	0.24
20_L	95_I	1.498	0.24
154_Y	158_K	1.487	0.24
9_T	68_S	1.484	0.24
86_I	102_L	1.458	0.23
66_L	117_A	1.448	0.23
116_L	143_V	1.438	0.23
18_V	95_I	1.437	0.23
65_M	89_I	1.435	0.22
67_E	71_L	1.398	0.22
31_R	119_G	1.384	0.21
99_L	164_K	1.381	0.21
133_S	137_A	1.369	0.21
27_A	84_T	1.352	0.21
109_G	140_F	1.348	0.21
28_F	46_Y	1.331	0.20
54_F	130_Q	1.330	0.20
54_F	131_I	1.330	0.20
135_E	139_A	1.265	0.19
72_N	89_I	1.249	0.19
14_P	142_F	1.237	0.18
32_A	37_A	1.214	0.18
42_N	147_S	1.206	0.18
33_I	96_I	1.197	0.18
115_G	132_A	1.190	0.18
142_F	147_S	1.188	0.18
76_L	124_T	1.178	0.17
43_S	94_M	1.160	0.17
108_A	168_Y	1.152	0.17
142_F	158_K	1.143	0.17
103_S	123_S	1.134	0.17
155_I	158_K	1.079	0.16
109_G	149_W	1.071	0.16
14_P	150_L	1.052	0.15
26_S	84_T	1.046	0.15
82_L	145_T	1.038	0.15
66_L	107_L	1.036	0.15
27_A	115_G	1.030	0.15
99_L	106_V	1.030	0.15
40_D	141_M	1.024	0.15
144_F	155_I	1.021	0.15
112_W	121_L	1.021	0.15
51_L	139_A	1.020	0.15
99_L	143_V	1.018	0.15
19_T	69_I	1.013	0.15
86_I	105_L	1.008	0.15
27_A	114_I	1.007	0.15
82_L	105_L	1.004	0.14
24_F	143_V	1.002	0.14
88_A	159_K	0.998	0.14
152_I	160_S	0.997	0.14
86_I	136_G	0.993	0.14
114_I	131_I	0.987	0.14
114_I	130_Q	0.987	0.14
124_T	129_W	0.981	0.14
81_I	152_I	0.976	0.14
86_I	150_L	0.973	0.14
99_L	133_S	0.971	0.14
68_S	99_L	0.968	0.14
82_L	102_L	0.967	0.14
75_L	81_I	0.967	0.14
69_I	110_M	0.967	0.14
37_A	98_F	0.964	0.14
43_S	142_F	0.946	0.14
82_L	163_I	0.942	0.14
27_A	131_I	0.940	0.14
27_A	130_Q	0.940	0.14
46_Y	104_G	0.930	0.13
33_I	159_K	0.927	0.13
28_F	114_I	0.923	0.13
19_T	110_M	0.908	0.13
76_L	119_G	0.908	0.13
60_S	93_F	0.907	0.13
74_S	157_A	0.901	0.13
43_S	59_W	0.890	0.13
137_A	147_S	0.890	0.13
15_M	149_W	0.890	0.13
141_M	145_T	0.888	0.13
72_N	138_A	0.886	0.13
43_S	93_F	0.885	0.13
75_L	147_S	0.885	0.13
156_L	160_S	0.882	0.13
45_A	53_T	0.881	0.13
29_I	57_H	0.880	0.13
48_G	131_I	0.878	0.13
48_G	130_Q	0.878	0.13
24_F	107_L	0.876	0.13
25_F	114_I	0.873	0.13
80_I	150_L	0.871	0.13
99_L	105_L	0.865	0.12
67_E	102_L	0.861	0.12
63_K	89_I	0.856	0.12
115_G	131_I	0.827	0.12
115_G	130_Q	0.827	0.12
98_F	160_S	0.825	0.12
121_L	138_A	0.824	0.12
65_M	147_S	0.823	0.12
149_W	159_K	0.821	0.12
52_I	139_A	0.817	0.12
89_I	140_F	0.809	0.12
69_I	168_Y	0.804	0.12
57_H	131_I	0.801	0.12
57_H	130_Q	0.801	0.12
119_G	146_G	0.796	0.12
95_I	154_Y	0.796	0.12
15_M	78_D	0.793	0.12
152_I	158_K	0.790	0.11
81_I	88_A	0.786	0.11
113_G	130_Q	0.784	0.11
113_G	131_I	0.784	0.11
65_M	109_G	0.784	0.11
26_S	151_S	0.784	0.11
82_L	158_K	0.782	0.11
48_G	114_I	0.779	0.11
54_F	114_I	0.778	0.11
44_S	157_A	0.776	0.11
141_M	159_K	0.773	0.11
152_I	155_I	0.766	0.11
44_S	142_F	0.766	0.11
81_I	136_G	0.765	0.11
77_Y	95_I	0.763	0.11
163_I	168_Y	0.758	0.11
43_S	82_L	0.753	0.11
48_G	55_L	0.744	0.11
150_L	165_I	0.744	0.11
12_F	145_T	0.736	0.11
95_I	107_L	0.732	0.11
14_P	19_T	0.728	0.11
29_I	49_G	0.715	0.11
31_R	76_L	0.703	0.10
99_L	158_K	0.702	0.10
73_P	84_T	0.701	0.10
9_T	16_L	0.697	0.10
151_S	168_Y	0.694	0.10
51_L	117_A	0.692	0.10
108_A	148_R	0.690	0.10
60_S	95_I	0.685	0.10
23_M	47_V	0.673	0.10
108_A	147_S	0.672	0.10
26_S	88_A	0.671	0.10
137_A	140_F	0.668	0.10
52_I	135_E	0.666	0.10
25_F	131_I	0.664	0.10
25_F	130_Q	0.664	0.10
19_T	35_V	0.664	0.10
21_G	100_T	0.664	0.10
106_V	116_L	0.656	0.10
72_N	94_M	0.651	0.10
36_P	100_T	0.645	0.10
27_A	117_A	0.644	0.10
109_G	148_R	0.643	0.10
22_L	95_I	0.642	0.10
96_I	102_L	0.637	0.10
68_S	81_I	0.636	0.10
22_L	134_V	0.635	0.10
24_F	123_S	0.633	0.10
26_S	114_I	0.630	0.10
156_L	159_K	0.630	0.10
96_I	106_V	0.629	0.10
112_W	140_F	0.618	0.09
106_V	159_K	0.615	0.09
11_K	137_A	0.613	0.09
85_A	106_V	0.612	0.09
27_A	52_I	0.608	0.09
95_I	111_A	0.607	0.09
54_F	113_G	0.602	0.09
52_I	115_G	0.600	0.09
70_L	74_S	0.597	0.09
114_I	133_S	0.594	0.09
19_T	66_L	0.587	0.09
32_A	47_V	0.587	0.09
24_F	70_L	0.582	0.09
105_L	109_G	0.579	0.09
60_S	116_L	0.577	0.09
31_R	146_G	0.572	0.09
22_L	86_I	0.570	0.09
102_L	106_V	0.565	0.09
12_F	40_D	0.564	0.09
27_A	88_A	0.560	0.09
60_S	111_A	0.559	0.09
152_I	168_Y	0.556	0.09
126_V	135_E	0.553	0.09
67_E	96_I	0.553	0.09
158_K	161_K	0.553	0.09
147_S	158_K	0.550	0.09
156_L	161_K	0.548	0.09
148_R	167_K	0.547	0.09
65_M	79_F	0.545	0.09
45_A	49_G	0.537	0.09
11_K	164_K	0.537	0.09
43_S	150_L	0.534	0.09
12_F	159_K	0.533	0.09
31_R	110_M	0.531	0.09
68_S	143_V	0.522	0.09
41_P	124_T	0.517	0.08
65_M	167_K	0.514	0.08
82_L	165_I	0.510	0.08
152_I	165_I	0.509	0.08
96_I	105_L	0.508	0.08
29_I	134_V	0.505	0.08
72_N	82_L	0.503	0.08
40_D	43_S	0.503	0.08
79_F	159_K	0.502	0.08
26_S	131_I	0.501	0.08
26_S	130_Q	0.501	0.08
82_L	155_I	0.500	0.08

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2m7gA	1	0.3526	6.8	0.97	Contact Map
3tpkA	1	0.1965	6.5	0.97	Contact Map
3sokA	1	0.4624	3.7	0.974	Contact Map
3ogkQ	1	0.0751	3.3	0.974	Contact Map
2aw2A	1	0.2428	2.7	0.976	Contact Map
2wzlA	1	0.3295	1.9	0.977	Contact Map
4hgmA	1	0.1965	1.9	0.977	Contact Map
4jvpA	2	0.2312	1.8	0.978	Contact Map
3r0mA	1	0.2023	1.8	0.978	Contact Map
3wcaA	1	0.3526	1.7	0.978	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0069 seconds.