Q97X61 - SULSO - GREMLIN Contacts

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Q97X61 - Uncharacterized protein

UniProt:	Q97X61	Sequences: MNSLVDQIISWIIALYGSAVPALLVIFLIGITGLKEITRYETGNTFMYKLNPVTKVILTIVVMTVAATTVWWIGAILTLILLLSYLTLNEGVRKFGYVSFLTLSTILGGTWSVAPYTPPSTLQLAFPNEKQFTVVWTFPSYFQVMGYEQQLTLQALIYGLQTSFRIAPVLLSALLLITTTTGSDIFRMFTKIKIPIAITFSVLVGIRMIPRIFELLDTSVKMQYMRGLGYGKPKLISSLLIVYAIFEAIIPTMVYLFRGAKNLAISADTRGFRAYPSRTSLVELKFTRVDYYGVAIIIALIVMAILANLLGFGRTIPYVGI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	321 (249)
Sequences:	3153 (2513)
Seq/√Len:	159.2

BACSU - ECFT YKOC
HALSA - Q9HPH6
SULSO - Q97X61 Q97WT3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
286_F	291_Y	5.763	1.00
133_T	154_Q	4.116	1.00
55_K	180_T	3.621	1.00
136_W	151_L	3.588	1.00
215_L	259_G	3.539	1.00
54_T	286_F	3.456	1.00
134_V	152_T	3.358	1.00
52_P	284_L	3.121	1.00
133_T	153_L	3.114	1.00
134_V	137_T	2.987	1.00
50_L	293_G	2.976	1.00
140_S	149_Q	2.814	1.00
45_T	48_Y	2.752	1.00
234_K	237_S	2.614	1.00
58_L	297_I	2.552	1.00
94_K	98_V	2.514	1.00
135_V	156_L	2.497	1.00
291_Y	295_A	2.431	1.00
44_N	49_K	2.384	1.00
217_D	221_K	2.353	1.00
79_L	168_P	2.286	1.00
131_Q	154_Q	2.275	1.00
50_L	54_T	2.246	1.00
55_K	179_T	2.244	1.00
137_T	150_Q	2.222	1.00
219_S	223_Q	2.220	1.00
54_T	294_V	2.156	1.00
85_Y	175_L	2.150	1.00
193_K	196_I	2.099	1.00
189_F	194_I	2.095	1.00
302_V	306_L	2.082	1.00
220_V	224_Y	2.052	1.00
134_V	150_Q	2.019	1.00
288_R	292_Y	1.984	1.00
156_L	160_L	1.747	1.00
274_A	277_S	1.744	1.00
219_S	252_T	1.740	1.00
60_I	64_T	1.692	1.00
59_T	176_L	1.670	1.00
208_M	263_L	1.647	1.00
135_V	153_L	1.627	1.00
115_P	159_G	1.606	1.00
157_I	160_L	1.593	1.00
292_Y	296_I	1.582	1.00
233_P	238_S	1.569	1.00
115_P	151_L	1.565	1.00
113_V	117_T	1.545	1.00
111_W	163_S	1.513	1.00
212_I	256_L	1.511	1.00
194_I	198_I	1.508	1.00
176_L	185_I	1.500	1.00
131_Q	134_V	1.447	1.00
140_S	150_Q	1.443	1.00
49_K	289_V	1.412	1.00
286_F	294_V	1.405	1.00
187_R	190_T	1.402	1.00
200_F	204_V	1.393	1.00
139_P	149_Q	1.352	1.00
189_F	193_K	1.344	1.00
46_F	88_L	1.340	1.00
221_K	224_Y	1.335	1.00
75_A	168_P	1.330	1.00
47_M	89_N	1.308	1.00
233_P	237_S	1.299	1.00
206_I	210_P	1.294	1.00
158_Y	162_T	1.291	1.00
223_Q	251_P	1.280	1.00
116_Y	151_L	1.274	1.00
47_M	85_Y	1.246	1.00
98_V	101_L	1.243	1.00
72_W	76_I	1.235	1.00
137_T	140_S	1.213	1.00
200_F	272_F	1.211	1.00
61_V	301_I	1.208	1.00
265_I	268_D	1.201	1.00
153_L	157_I	1.188	1.00
72_W	157_I	1.186	1.00
236_I	243_Y	1.186	1.00
287_T	290_D	1.172	1.00
62_V	172_S	1.171	1.00
82_L	172_S	1.167	1.00
114_A	162_T	1.167	1.00
157_I	161_Q	1.154	1.00
73_I	76_I	1.152	1.00
43_G	46_F	1.136	1.00
131_Q	153_L	1.135	1.00
199_T	210_P	1.130	1.00
212_I	216_L	1.128	1.00
72_W	161_Q	1.100	1.00
66_A	78_T	1.099	1.00
231_G	238_S	1.099	1.00
87_T	90_E	1.099	1.00
38_T	41_E	1.092	0.99
296_I	299_A	1.084	0.99
136_W	139_P	1.083	0.99
216_L	220_V	1.081	0.99
135_V	151_L	1.079	0.99
297_I	301_I	1.079	0.99
197_A	212_I	1.075	0.99
234_K	238_S	1.074	0.99
131_Q	152_T	1.069	0.99
201_S	205_G	1.067	0.99
71_W	74_G	1.060	0.99
205_G	258_R	1.057	0.99
65_V	301_I	1.056	0.99
233_P	244_A	1.055	0.99
50_L	289_V	1.055	0.99
53_V	284_L	1.051	0.99
139_P	150_Q	1.049	0.99
210_P	251_P	1.036	0.99
46_F	289_V	1.029	0.99
97_Y	101_L	1.018	0.99
73_I	77_L	1.016	0.99
59_T	172_S	1.011	0.99
187_R	191_K	1.005	0.99
138_F	150_Q	1.005	0.99
135_V	152_T	1.004	0.99
210_P	264_A	1.001	0.99
220_V	248_A	0.999	0.99
252_T	267_A	0.999	0.99
288_R	291_Y	0.988	0.99
223_Q	244_A	0.985	0.99
93_R	97_Y	0.984	0.99
106_I	166_I	0.984	0.99
164_F	168_P	0.982	0.99
43_G	90_E	0.981	0.99
105_T	109_G	0.976	0.99
83_L	87_T	0.961	0.99
58_L	293_G	0.959	0.99
155_A	159_G	0.957	0.99
267_A	272_F	0.950	0.99
237_S	243_Y	0.932	0.98
287_T	291_Y	0.926	0.98
291_Y	294_V	0.923	0.98
43_G	48_Y	0.920	0.98
54_T	293_G	0.916	0.98
197_A	272_F	0.912	0.98
183_S	188_M	0.911	0.98
66_A	172_S	0.909	0.98
65_V	69_T	0.909	0.98
295_A	302_V	0.906	0.98
53_V	188_M	0.904	0.98
96_G	171_L	0.899	0.98
162_T	209_I	0.897	0.98
160_L	163_S	0.897	0.98
218_T	262_N	0.897	0.98
84_S	88_L	0.896	0.98
78_T	300_L	0.892	0.98
186_F	190_T	0.892	0.98
227_G	251_P	0.888	0.98
135_V	154_Q	0.887	0.98
289_V	292_Y	0.883	0.98
154_Q	158_Y	0.883	0.98
87_T	303_M	0.882	0.98
92_V	95_F	0.880	0.98
286_F	290_D	0.879	0.98
303_M	306_L	0.872	0.97
207_R	252_T	0.869	0.97
65_V	300_L	0.859	0.97
186_F	189_F	0.857	0.97
192_I	195_P	0.855	0.97
66_A	168_P	0.855	0.97
64_T	67_A	0.848	0.97
54_T	291_Y	0.845	0.97
61_V	305_I	0.844	0.97
197_A	274_A	0.841	0.97
77_L	80_I	0.841	0.97
285_K	288_R	0.840	0.97
39_R	214_E	0.835	0.97
159_G	189_F	0.835	0.97
207_R	263_L	0.833	0.97
51_N	284_L	0.825	0.97
90_E	288_R	0.820	0.96
295_A	298_I	0.814	0.96
296_I	300_L	0.807	0.96
79_L	83_L	0.802	0.96
212_I	263_L	0.801	0.96
259_G	262_N	0.800	0.96
302_V	305_I	0.799	0.96
50_L	290_D	0.791	0.96
58_L	85_Y	0.787	0.95
182_G	210_P	0.784	0.95
215_L	218_T	0.783	0.95
213_F	296_I	0.781	0.95
255_Y	268_D	0.778	0.95
182_G	212_I	0.777	0.95
173_A	199_T	0.776	0.95
189_F	196_I	0.773	0.95
65_V	74_G	0.771	0.95
108_G	111_W	0.770	0.95
59_T	163_S	0.770	0.95
76_I	80_I	0.768	0.95
62_V	297_I	0.767	0.95
99_S	178_T	0.767	0.95
79_L	164_F	0.766	0.95
165_R	216_L	0.764	0.95
87_T	306_L	0.760	0.94
94_K	97_Y	0.758	0.94
80_I	83_L	0.757	0.94
211_R	263_L	0.757	0.94
77_L	300_L	0.755	0.94
219_S	235_L	0.755	0.94
70_V	75_A	0.751	0.94
190_T	193_K	0.749	0.94
62_V	66_A	0.742	0.94
293_G	297_I	0.742	0.94
45_T	49_K	0.740	0.94
177_I	272_F	0.737	0.94
47_M	88_L	0.734	0.93
46_F	288_R	0.733	0.93
133_T	137_T	0.730	0.93
225_M	269_T	0.728	0.93
105_T	194_I	0.728	0.93
115_P	155_A	0.724	0.93
303_M	307_A	0.723	0.93
136_W	140_S	0.722	0.93
190_T	196_I	0.719	0.93
138_F	149_Q	0.716	0.93
130_K	134_V	0.716	0.93
185_I	252_T	0.716	0.93
223_Q	247_E	0.716	0.93
114_A	159_G	0.713	0.92
96_G	175_L	0.711	0.92
138_F	160_L	0.704	0.92
69_T	74_G	0.704	0.92
295_A	306_L	0.703	0.92
229_G	257_F	0.702	0.92
132_F	154_Q	0.698	0.92
135_V	138_F	0.697	0.92
100_F	103_L	0.691	0.91
154_Q	157_I	0.683	0.91
168_P	172_S	0.683	0.91
188_M	272_F	0.682	0.91
288_R	302_V	0.681	0.91
197_A	200_F	0.678	0.90
246_F	249_I	0.678	0.90
105_T	108_G	0.675	0.90
91_G	178_T	0.675	0.90
114_A	209_I	0.674	0.90
172_S	175_L	0.672	0.90
110_T	117_T	0.669	0.90
300_L	304_A	0.667	0.90
298_I	301_I	0.665	0.90
57_I	189_F	0.665	0.90
166_I	200_F	0.660	0.89
111_W	159_G	0.660	0.89
85_Y	138_F	0.660	0.89
46_F	78_T	0.657	0.89
74_G	113_V	0.657	0.89
39_R	265_I	0.653	0.89
114_A	155_A	0.651	0.89
298_I	302_V	0.650	0.88
237_S	244_A	0.648	0.88
111_W	155_A	0.645	0.88
198_I	248_A	0.644	0.88
102_T	105_T	0.643	0.88
201_S	259_G	0.643	0.88
257_F	264_A	0.638	0.88
188_M	192_I	0.637	0.87
46_F	83_L	0.636	0.87
87_T	302_V	0.635	0.87
78_T	299_A	0.635	0.87
132_F	153_L	0.633	0.87
177_I	182_G	0.630	0.87
199_T	264_A	0.630	0.87
103_L	167_A	0.628	0.87
62_V	82_L	0.628	0.87
253_M	257_F	0.622	0.86
76_I	236_I	0.619	0.86
47_M	170_L	0.618	0.86
43_G	95_F	0.617	0.86
84_S	288_R	0.616	0.86
208_M	264_A	0.616	0.86
44_N	90_E	0.614	0.85
45_T	89_N	0.614	0.85
184_D	280_S	0.612	0.85
112_S	116_Y	0.611	0.85
89_N	179_T	0.610	0.85
93_R	303_M	0.608	0.85
60_I	135_V	0.604	0.85
65_V	297_I	0.604	0.85
216_L	252_T	0.602	0.84
153_L	158_Y	0.601	0.84
190_T	204_V	0.601	0.84
205_G	267_A	0.599	0.84
41_E	92_V	0.596	0.84
278_R	290_D	0.595	0.84
69_T	304_A	0.595	0.84
82_L	171_L	0.593	0.83
173_A	209_I	0.591	0.83
78_T	168_P	0.589	0.83
65_V	135_V	0.587	0.83
259_G	267_A	0.587	0.83
165_R	222_M	0.587	0.83
255_Y	261_K	0.586	0.83
218_T	259_G	0.584	0.83
199_T	256_L	0.583	0.82
271_G	274_A	0.581	0.82
77_L	256_L	0.578	0.82
107_L	111_W	0.578	0.82
193_K	199_T	0.577	0.82
57_I	76_I	0.576	0.82
292_Y	302_V	0.575	0.82
62_V	85_Y	0.573	0.81
57_I	294_V	0.573	0.81
111_W	173_A	0.572	0.81
112_S	151_L	0.568	0.81
61_V	65_V	0.567	0.81
94_K	101_L	0.563	0.80
210_P	215_L	0.562	0.80
271_G	281_L	0.561	0.80
196_I	269_T	0.559	0.80
217_D	296_I	0.559	0.80
58_L	62_V	0.558	0.80
103_L	107_L	0.557	0.80
112_S	299_A	0.557	0.80
149_Q	155_A	0.557	0.80
103_L	205_G	0.550	0.79
204_V	263_L	0.548	0.78
190_T	253_M	0.545	0.78
84_S	87_T	0.545	0.78
175_L	179_T	0.544	0.78
231_G	236_I	0.543	0.78
85_Y	307_A	0.542	0.78
289_V	306_L	0.541	0.78
227_G	272_F	0.541	0.78
72_W	136_W	0.540	0.77
203_L	282_V	0.539	0.77
292_Y	306_L	0.539	0.77
162_T	242_V	0.538	0.77
189_F	202_V	0.537	0.77
47_M	50_L	0.535	0.77
298_I	306_L	0.535	0.77
289_V	303_M	0.534	0.77
236_I	295_A	0.528	0.76
174_L	178_T	0.527	0.76
199_T	202_V	0.526	0.76
73_I	307_A	0.523	0.75
191_K	283_E	0.523	0.75
84_S	300_L	0.522	0.75
83_L	86_L	0.522	0.75
214_E	217_D	0.520	0.75
155_A	265_I	0.519	0.75
67_A	206_I	0.518	0.74
193_K	261_K	0.518	0.74
184_D	187_R	0.517	0.74
266_S	279_T	0.517	0.74
136_W	153_L	0.517	0.74
48_Y	165_R	0.517	0.74
192_I	276_P	0.517	0.74
292_Y	295_A	0.516	0.74
65_V	306_L	0.513	0.74
208_M	211_R	0.513	0.74
268_D	279_T	0.512	0.74
226_R	266_S	0.512	0.74
289_V	299_A	0.512	0.74
292_Y	303_M	0.511	0.73
175_L	180_T	0.511	0.73
287_T	303_M	0.510	0.73
163_S	169_V	0.508	0.73
203_L	219_S	0.508	0.73
258_R	263_L	0.507	0.73
74_G	308_N	0.507	0.73
187_R	194_I	0.506	0.73
254_V	257_F	0.506	0.73
196_I	200_F	0.505	0.73
215_L	255_Y	0.505	0.73
63_M	114_A	0.504	0.72
86_L	96_G	0.504	0.72
77_L	303_M	0.504	0.72
79_L	172_S	0.502	0.72
37_I	100_F	0.501	0.72
197_A	253_M	0.501	0.72
212_I	228_L	0.500	0.72

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4huqT	1	0.7383	100	0.371	Contact Map
2l0eA	1	0.0966	11.3	0.964	Contact Map
1rh5C	1	0.0997	8.7	0.966	Contact Map
3hd7A	1	0.2555	4.2	0.97	Contact Map
1r2dA	1	0.1807	2.5	0.974	Contact Map
1n7lA	1	0.1651	2	0.975	Contact Map
2ww9C	1	0.0654	1.9	0.975	Contact Map
2kixA	3	0.1028	1.8	0.976	Contact Map
2a5yA	1	0.2181	1.8	0.976	Contact Map
4p4hI	3	0.296	1.7	0.976	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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