Q97X57 - SULSO - GREMLIN Contacts

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Q97X57 - Uncharacterized protein

UniProt:	Q97X57	Sequences: MQIIMSENDRYINPLILDNPLRFLVSSPNKIISRFSEYLKEDYTIVDLGCGPGFFTTVLARMVKTVYAIDPDERAISKLKEKVQKLSLNNVIPYVAPAQKLEFIRDKSIDFVFSNLMLCCTSDHDGALREIKRILKDSGLAYISVTRSFITKDKKDVSGKEWKEILSQFKVVKEGKSLLERWAIVQQKTL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	190 (151)
Sequences:	16804 (13035)
Seq/√Len:	1060.8

ECOLI - UBIE TAM UBIG YJHP SMTA TEHB BIOC CMOA CMOB YAFE RLMA
BACSU - YRHH YXBB MENG YCGJ YODH YDAC YBAJ YRRT YQEM YXJB
HALSA - Q9HR81 Q9HR63 Q9HND6 Q9HMT2 ARSM Q9HRX3 Q9HQ85 Q9HSK6
SULSO - Q97X57 Q97WT7 Q97ZU8 Q7LXN7 Q97YX4 Q97WN4 Q97WH3 Q97XD7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
73_E	95_V	2.761	1.00
50_C	68_A	2.709	1.00
44_T	65_T	2.658	1.00
49_G	117_M	2.564	1.00
132_K	171_V	2.521	1.00
69_I	96_A	2.376	1.00
104_I	109_I	2.180	1.00
79_L	93_P	2.137	1.00
67_Y	109_I	2.078	1.00
46_V	109_I	2.059	1.00
112_V	131_I	2.047	1.00
110_D	136_K	2.010	1.00
135_L	139_G	1.994	1.00
130_E	133_R	1.980	1.00
40_K	43_Y	1.972	1.00
65_T	92_I	1.928	1.00
131_I	141_A	1.894	1.00
125_D	168_Q	1.890	1.00
123_D	126_G	1.875	1.00
56_T	66_V	1.859	1.00
76_I	93_P	1.837	1.00
73_E	77_S	1.804	1.00
48_L	98_A	1.797	1.00
48_L	131_I	1.754	1.00
125_D	129_R	1.714	1.00
71_P	97_P	1.625	1.00
67_Y	94_Y	1.619	1.00
78_K	81_E	1.603	1.00
43_Y	111_F	1.597	1.00
112_V	135_L	1.589	1.00
50_C	56_T	1.586	1.00
96_A	102_E	1.574	1.00
163_K	167_S	1.574	1.00
76_I	95_V	1.570	1.00
44_T	67_Y	1.541	1.00
61_R	86_L	1.528	1.00
117_M	121_T	1.525	1.00
45_I	59_L	1.496	1.00
83_V	93_P	1.475	1.00
119_C	145_V	1.475	1.00
57_T	82_K	1.465	1.00
130_E	134_I	1.461	1.00
135_L	141_A	1.426	1.00
116_L	119_C	1.394	1.00
44_T	136_K	1.391	1.00
105_R	108_S	1.370	1.00
94_Y	104_I	1.349	1.00
44_T	109_I	1.348	1.00
121_T	127_A	1.347	1.00
56_T	68_A	1.343	1.00
45_I	111_F	1.340	1.00
158_S	161_E	1.324	1.00
70_D	76_I	1.308	1.00
114_S	117_M	1.306	1.00
39_L	43_Y	1.300	1.00
116_L	120_C	1.283	1.00
57_T	83_V	1.273	1.00
120_C	145_V	1.269	1.00
125_D	165_I	1.247	1.00
164_E	168_Q	1.218	1.00
67_Y	92_I	1.209	1.00
124_H	165_I	1.203	1.00
106_D	133_R	1.180	1.00
70_D	75_A	1.164	1.00
44_T	110_D	1.138	1.00
128_L	166_L	1.134	1.00
47_D	50_C	1.111	1.00
68_A	93_P	1.109	1.00
135_L	171_V	1.109	1.00
98_A	121_T	1.102	1.00
44_T	108_S	1.100	1.00
126_G	129_R	1.079	1.00
58_V	61_R	1.073	1.00
74_R	77_S	1.068	1.00
101_L	134_I	1.067	1.00
68_A	79_L	1.063	1.00
60_A	90_N	1.053	1.00
67_Y	104_I	1.043	1.00
118_L	121_T	1.039	1.00
101_L	130_E	1.035	1.00
98_A	117_M	1.031	1.00
59_L	113_F	1.011	1.00
72_D	75_A	1.010	1.00
76_I	80_K	0.994	1.00
57_T	86_L	0.977	1.00
112_V	134_I	0.970	1.00
164_E	167_S	0.969	1.00
50_C	79_L	0.968	1.00
52_P	75_A	0.958	1.00
125_D	169_F	0.949	1.00
77_S	80_K	0.937	1.00
55_F	115_N	0.929	1.00
56_T	93_P	0.923	1.00
127_A	131_I	0.921	1.00
49_G	114_S	0.917	1.00
115_N	144_S	0.904	1.00
53_G	79_L	0.901	1.00
101_L	104_I	0.893	1.00
30_K	33_S	0.882	1.00
57_T	61_R	0.880	1.00
116_L	146_T	0.867	1.00
116_L	144_S	0.866	1.00
118_L	128_L	0.865	1.00
102_E	130_E	0.856	1.00
99_Q	123_D	0.855	1.00
56_T	91_V	0.854	1.00
46_V	112_V	0.848	1.00
83_V	91_V	0.842	1.00
39_L	42_D	0.839	1.00
75_A	116_L	0.836	1.00
46_V	134_I	0.823	1.00
30_K	34_R	0.820	1.00
132_K	169_F	0.816	1.00
163_K	176_K	0.815	1.00
118_L	127_A	0.810	1.00
100_K	126_G	0.803	1.00
50_C	76_I	0.797	1.00
97_P	100_K	0.797	1.00
24_L	27_S	0.782	1.00
29_N	33_S	0.778	1.00
55_F	113_F	0.772	1.00
52_P	82_K	0.763	1.00
128_L	169_F	0.762	1.00
80_K	84_Q	0.760	1.00
57_T	60_A	0.759	1.00
104_I	134_I	0.755	1.00
54_F	82_K	0.743	1.00
119_C	146_T	0.742	1.00
45_I	66_V	0.741	1.00
24_L	28_P	0.733	1.00
88_L	91_V	0.731	1.00
43_Y	110_D	0.729	1.00
131_I	135_L	0.728	1.00
128_L	165_I	0.728	1.00
57_T	88_L	0.726	1.00
69_I	94_Y	0.725	1.00
99_Q	121_T	0.716	1.00
58_V	62_M	0.716	1.00
32_I	35_F	0.711	1.00
77_S	81_E	0.711	1.00
159_G	163_K	0.707	1.00
29_N	58_V	0.699	1.00
25_V	29_N	0.696	1.00
48_L	112_V	0.696	1.00
38_Y	140_L	0.692	1.00
82_K	86_L	0.684	1.00
45_I	113_F	0.681	1.00
80_K	93_P	0.681	1.00
114_S	121_T	0.678	1.00
69_I	101_L	0.678	1.00
47_D	120_C	0.672	1.00
45_I	64_K	0.671	1.00
109_I	134_I	0.670	1.00
161_E	164_E	0.668	1.00
42_D	64_K	0.667	1.00
55_F	58_V	0.665	1.00
167_S	171_V	0.663	1.00
126_G	130_E	0.660	1.00
114_S	131_I	0.660	1.00
99_Q	127_A	0.659	1.00
157_V	162_W	0.655	1.00
75_A	120_C	0.649	1.00
114_S	143_I	0.647	1.00
111_F	140_L	0.646	1.00
54_F	58_V	0.646	1.00
55_F	119_C	0.646	1.00
47_D	113_F	0.642	1.00
156_D	159_G	0.641	1.00
81_E	84_Q	0.640	1.00
143_I	166_L	0.633	1.00
129_R	169_F	0.632	1.00
35_F	142_Y	0.631	1.00
173_K	176_K	0.631	1.00
82_K	85_K	0.618	1.00
33_S	62_M	0.614	1.00
63_V	66_V	0.607	1.00
23_F	27_S	0.607	1.00
84_Q	89_N	0.600	1.00
53_G	93_P	0.598	1.00
52_P	116_L	0.594	1.00
120_C	146_T	0.593	1.00
165_I	169_F	0.588	1.00
73_E	80_K	0.587	1.00
115_N	145_V	0.586	1.00
115_N	119_C	0.584	1.00
68_A	91_V	0.582	1.00
31_I	142_Y	0.582	1.00
108_S	136_K	0.581	1.00
99_Q	122_S	0.580	1.00
28_P	55_F	0.578	1.00
48_L	127_A	0.577	1.00
124_H	157_V	0.574	1.00
28_P	32_I	0.572	1.00
147_R	150_I	0.563	1.00
78_K	82_K	0.561	1.00
154_K	157_V	0.559	1.00
167_S	173_K	0.553	1.00
116_L	145_V	0.551	1.00
107_K	137_D	0.546	1.00
148_S	158_S	0.546	1.00
25_V	28_P	0.545	1.00
106_D	134_I	0.542	1.00
99_Q	126_G	0.542	1.00
115_N	120_C	0.538	1.00
141_A	166_L	0.536	1.00
114_S	141_A	0.536	1.00
61_R	88_L	0.535	1.00
118_L	143_I	0.535	1.00
49_G	71_P	0.533	1.00
50_C	70_D	0.530	1.00
23_F	26_S	0.528	1.00
161_E	167_S	0.528	1.00
111_F	139_G	0.527	1.00
47_D	66_V	0.520	1.00
100_K	130_E	0.518	1.00
106_D	130_E	0.516	1.00
60_A	91_V	0.514	1.00
50_C	93_P	0.511	1.00
83_V	86_L	0.510	1.00
52_P	78_K	0.509	1.00
74_R	78_K	0.507	1.00
154_K	158_S	0.505	1.00
160_K	163_K	0.505	1.00
43_Y	140_L	0.503	1.00
76_I	79_L	0.501	1.00
71_P	98_A	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1vl5A	1	0.8579	100	0.364	Contact Map
4pneA	2	0.9737	100	0.384	Contact Map
1xxlA	1	0.8632	100	0.385	Contact Map
3sm3A	2	0.8474	100	0.388	Contact Map
3dh0A	1	0.9526	100	0.389	Contact Map
4obxA	2	0.9158	100	0.393	Contact Map
2o57A	2	0.9947	100	0.394	Contact Map
2p35A	2	0.8789	100	0.394	Contact Map
4krgA	1	0.9737	100	0.395	Contact Map
3vc1A	5	0.9842	100	0.396	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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