Q97X54 - SULSO - GREMLIN Contacts

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Q97X54 - Uncharacterized protein

UniProt:	Q97X54	Sequences: MRIEELKPKPPSLKEYLKVKPLGFSSGLFLYYIYLKTYINLRYFNRFPKINEGYTKLLKVKYDGMYWYVRKENLVHDIWIILLHNEPEVRKWISFEKDMIFVDVGAYIGSYTIRAGIRGANVIAFEPNPVSFKILELNVKENEIESKVKLFNNAVWSRSGKIELFANNDMTSAYNNKGNKIVVNAIALDSLNLKRVNLLKVDVEGAELEVLKGAMNTLDVTDKILIEVRKEFERNIDDLLRSKGFKLSKVDTTYDSIGNFLYEKSS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	266 (214)
Sequences:	692 (657)
Seq/√Len:	44.9

HALSA - Q9HQP5 Q9HSW3
SULSO - Q97X54 Q97XT4 Q7LXG2 Q7LXE9 Q7LXF6 Q7LXE1 Q97XG4 Q97XU3 Q7LXF9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
154_A	185_A	4.866	1.00
203_V	210_V	4.733	1.00
189_D	213_G	3.795	1.00
132_F	150_L	3.599	1.00
156_W	206_A	3.464	1.00
157_S	209_E	3.442	1.00
125_F	191_L	3.350	1.00
156_W	185_A	3.279	1.00
104_V	155_V	3.171	1.00
157_S	212_K	2.977	1.00
161_K	182_V	2.960	1.00
159_S	190_S	2.799	1.00
106_A	135_L	2.744	1.00
222_D	245_F	2.688	1.00
187_A	190_S	2.592	1.00
129_P	181_I	2.499	1.00
201_V	210_V	2.483	1.00
189_D	214_A	2.445	1.00
154_A	183_V	2.393	1.00
104_V	201_V	2.288	1.00
106_A	124_A	2.199	1.00
186_I	190_S	2.179	1.00
132_F	135_L	2.163	1.00
153_N	186_I	2.118	1.00
132_F	136_E	2.091	1.00
159_S	186_I	2.078	0.99
125_F	155_V	2.066	0.99
132_F	152_N	1.999	0.99
153_N	184_N	1.991	0.99
188_L	217_T	1.951	0.99
123_I	151_F	1.928	0.99
103_D	200_K	1.915	0.99
107_Y	110_S	1.895	0.99
208_L	239_L	1.877	0.99
112_T	148_V	1.838	0.99
99_M	197_N	1.837	0.99
151_F	191_L	1.815	0.99
113_I	138_N	1.801	0.98
128_N	131_S	1.796	0.98
121_N	149_K	1.710	0.98
161_K	184_N	1.674	0.98
124_A	135_L	1.636	0.97
207_E	226_I	1.629	0.97
199_L	222_D	1.618	0.97
129_P	152_N	1.609	0.97
163_E	182_V	1.601	0.97
202_D	227_E	1.521	0.96
224_I	240_L	1.516	0.96
198_L	225_L	1.508	0.95
189_D	217_T	1.496	0.95
46_R	49_K	1.483	0.95
98_D	120_A	1.452	0.94
189_D	218_L	1.451	0.94
100_I	123_I	1.430	0.94
101_F	122_V	1.409	0.93
203_V	227_E	1.407	0.93
162_I	185_A	1.373	0.92
164_L	181_I	1.365	0.92
112_T	122_V	1.312	0.91
139_V	148_V	1.311	0.91
213_G	229_R	1.309	0.91
99_M	223_K	1.307	0.91
137_L	140_K	1.288	0.90
139_V	150_L	1.271	0.89
123_I	191_L	1.268	0.89
156_W	162_I	1.238	0.88
155_V	210_V	1.236	0.88
199_L	221_T	1.236	0.88
111_Y	229_R	1.198	0.86
204_E	207_E	1.182	0.85
107_Y	227_E	1.182	0.85
135_L	150_L	1.174	0.85
128_N	166_A	1.157	0.84
203_V	206_A	1.156	0.84
227_E	230_K	1.124	0.82
208_L	212_K	1.123	0.82
59_K	62_Y	1.098	0.81
127_P	154_A	1.095	0.81
239_L	243_K	1.094	0.81
156_W	209_E	1.091	0.80
127_P	152_N	1.089	0.80
213_G	222_D	1.073	0.79
96_E	99_M	1.071	0.79
159_S	187_A	1.071	0.79
98_D	119_G	1.041	0.77
95_F	101_F	1.014	0.75
221_T	245_F	0.997	0.74
104_V	210_V	0.996	0.74
101_F	120_A	0.990	0.74
148_V	226_I	0.988	0.73
125_F	213_G	0.987	0.73
99_M	118_R	0.983	0.73
89_V	92_W	0.975	0.72
154_A	162_I	0.975	0.72
69_V	94_S	0.962	0.71
138_N	141_E	0.959	0.71
188_L	214_A	0.955	0.71
101_F	252_T	0.954	0.71
127_P	164_L	0.952	0.71
199_L	214_A	0.942	0.70
212_K	235_N	0.942	0.70
228_V	249_K	0.941	0.70
63_D	66_Y	0.926	0.68
99_M	245_F	0.907	0.67
95_F	98_D	0.894	0.66
156_W	160_G	0.893	0.66
227_E	234_R	0.890	0.65
95_F	119_G	0.887	0.65
104_V	203_V	0.886	0.65
217_T	221_T	0.884	0.65
113_I	142_N	0.862	0.63
125_F	217_T	0.862	0.63
218_L	222_D	0.861	0.63
201_V	227_E	0.859	0.63
204_E	229_R	0.855	0.62
144_I	148_V	0.851	0.62
136_E	150_L	0.850	0.62
104_V	227_E	0.846	0.61
201_V	207_E	0.845	0.61
125_F	151_F	0.843	0.61
95_F	99_M	0.840	0.61
203_V	229_R	0.839	0.61
133_K	136_E	0.836	0.60
90_R	110_S	0.834	0.60
128_N	171_T	0.833	0.60
105_G	205_G	0.829	0.60
191_L	239_L	0.829	0.60
214_A	222_D	0.824	0.59
211_L	239_L	0.819	0.59
193_L	196_V	0.812	0.58
125_F	153_N	0.812	0.58
101_F	229_R	0.809	0.58
124_A	128_N	0.807	0.58
210_V	213_G	0.801	0.57
99_M	120_A	0.799	0.57
206_A	209_E	0.798	0.57
214_A	217_T	0.798	0.57
155_V	185_A	0.796	0.57
73_N	76_H	0.794	0.56
202_D	205_G	0.791	0.56
125_F	188_L	0.791	0.56
119_G	122_V	0.789	0.56
224_I	227_E	0.787	0.56
54_Y	67_W	0.786	0.56
121_N	194_K	0.786	0.56
189_D	221_T	0.783	0.55
100_I	197_N	0.776	0.55
230_K	237_D	0.775	0.55
185_A	206_A	0.773	0.54
139_V	144_I	0.765	0.54
57_L	62_Y	0.761	0.53
228_V	236_I	0.760	0.53
203_V	207_E	0.759	0.53
120_A	197_N	0.746	0.52
105_G	109_G	0.739	0.51
222_D	230_K	0.738	0.51
193_L	220_V	0.737	0.51
214_A	229_R	0.737	0.51
215_M	219_D	0.736	0.51
123_I	194_K	0.732	0.51
108_I	124_A	0.728	0.50
186_I	191_L	0.726	0.50
61_K	65_M	0.725	0.50
101_F	191_L	0.722	0.50
210_V	230_K	0.722	0.50
199_L	224_I	0.720	0.49
227_E	232_F	0.718	0.49
176_N	219_D	0.713	0.49
189_D	229_R	0.703	0.48
155_V	214_A	0.702	0.48
189_D	216_N	0.700	0.47
88_E	92_W	0.698	0.47
176_N	246_K	0.698	0.47
84_H	90_R	0.697	0.47
104_V	187_A	0.697	0.47
136_E	140_K	0.694	0.47
230_K	234_R	0.693	0.47
172_S	178_G	0.692	0.47
157_S	206_A	0.690	0.46
145_E	177_K	0.689	0.46
104_V	225_L	0.688	0.46
241_R	244_G	0.687	0.46
98_D	169_D	0.682	0.46
209_E	212_K	0.681	0.46
193_L	197_N	0.680	0.45
100_I	158_R	0.679	0.45
112_T	139_V	0.677	0.45
126_E	132_F	0.676	0.45
214_A	218_L	0.673	0.45
198_L	223_K	0.672	0.45
107_Y	111_Y	0.669	0.44
135_L	139_V	0.666	0.44
154_A	160_G	0.666	0.44
189_D	222_D	0.666	0.44
54_Y	57_L	0.656	0.43
79_W	83_L	0.654	0.43
160_G	166_A	0.651	0.43
148_V	169_D	0.650	0.43
101_F	112_T	0.648	0.42
69_V	113_I	0.648	0.42
86_E	111_Y	0.644	0.42
107_Y	131_S	0.644	0.42
229_R	237_D	0.644	0.42
112_T	142_N	0.644	0.42
115_A	142_N	0.642	0.42
203_V	213_G	0.642	0.42
90_R	93_I	0.641	0.42
53_G	66_Y	0.640	0.42
214_A	221_T	0.640	0.42
102_V	188_L	0.639	0.42
102_V	123_I	0.639	0.42
83_L	90_R	0.638	0.41
160_G	206_A	0.636	0.41
69_V	76_H	0.630	0.41
230_K	233_E	0.629	0.41
96_E	120_A	0.629	0.41
106_A	144_I	0.626	0.40
145_E	150_L	0.625	0.40
138_N	142_N	0.625	0.40
96_E	197_N	0.625	0.40
133_K	246_K	0.624	0.40
57_L	70_R	0.622	0.40
155_V	186_I	0.621	0.40
118_R	188_L	0.620	0.40
62_Y	70_R	0.620	0.40
59_K	70_R	0.620	0.40
64_G	160_G	0.613	0.39
122_V	142_N	0.608	0.39
187_A	213_G	0.606	0.38
115_A	120_A	0.605	0.38
212_K	215_M	0.605	0.38
232_F	236_I	0.603	0.38
102_V	155_V	0.602	0.38
104_V	125_F	0.602	0.38
164_L	171_T	0.601	0.38
208_L	213_G	0.601	0.38
155_V	201_V	0.599	0.38
127_P	207_E	0.598	0.38
89_V	225_L	0.596	0.38
124_A	148_V	0.595	0.37
118_R	122_V	0.595	0.37
102_V	196_V	0.595	0.37
232_F	237_D	0.594	0.37
229_R	247_L	0.593	0.37
222_D	248_S	0.589	0.37
56_K	63_D	0.586	0.37
229_R	232_F	0.586	0.37
154_A	188_L	0.586	0.37
62_Y	66_Y	0.584	0.36
84_H	137_L	0.577	0.36
111_Y	115_A	0.576	0.36
42_R	46_R	0.576	0.36
197_N	222_D	0.574	0.36
102_V	225_L	0.574	0.36
93_I	137_L	0.572	0.35
107_Y	234_R	0.571	0.35
104_V	208_L	0.571	0.35
59_K	63_D	0.570	0.35
42_R	50_I	0.569	0.35
227_E	237_D	0.568	0.35
94_S	169_D	0.568	0.35
104_V	226_I	0.567	0.35
128_N	164_L	0.565	0.35
44_F	48_P	0.565	0.35
218_L	221_T	0.564	0.35
132_F	159_S	0.564	0.35
115_A	144_I	0.563	0.35
116_G	137_L	0.563	0.35
234_R	237_D	0.563	0.35
195_R	198_L	0.562	0.35
99_M	250_V	0.562	0.35
213_G	218_L	0.562	0.35
125_F	166_A	0.559	0.34
166_A	242_S	0.558	0.34
195_R	216_N	0.556	0.34
123_I	149_K	0.556	0.34
106_A	138_N	0.554	0.34
49_K	67_W	0.551	0.34
174_Y	246_K	0.549	0.33
195_R	220_V	0.543	0.33
208_L	245_F	0.543	0.33
83_L	88_E	0.542	0.33
53_G	133_K	0.539	0.33
57_L	164_L	0.538	0.32
79_W	86_E	0.538	0.32
154_A	233_E	0.534	0.32
188_L	239_L	0.532	0.32
143_E	238_D	0.530	0.32
157_S	218_L	0.527	0.32
98_D	197_N	0.525	0.31
56_K	241_R	0.524	0.31
149_K	191_L	0.524	0.31
64_G	96_E	0.523	0.31
128_N	226_I	0.523	0.31
97_K	190_S	0.523	0.31
199_L	245_F	0.521	0.31
107_Y	237_D	0.521	0.31
170_M	218_L	0.520	0.31
220_V	245_F	0.519	0.31
173_A	182_V	0.519	0.31
201_V	226_I	0.518	0.31
88_E	93_I	0.518	0.31
212_K	240_L	0.517	0.31
105_G	126_E	0.517	0.31
189_D	239_L	0.514	0.30
173_A	178_G	0.514	0.30
122_V	148_V	0.513	0.30
81_I	88_E	0.512	0.30
208_L	232_F	0.511	0.30
54_Y	124_A	0.509	0.30
231_E	235_N	0.509	0.30
173_A	177_K	0.509	0.30
135_L	203_V	0.508	0.30
65_M	70_R	0.507	0.30
72_E	76_H	0.507	0.30
112_T	115_A	0.507	0.30
110_S	120_A	0.504	0.30
57_L	79_W	0.503	0.30
199_L	213_G	0.501	0.29
183_V	198_L	0.500	0.29
115_A	118_R	0.500	0.29

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2py6A	4	0.9323	100	0.402	Contact Map
3k6rA	1	0.8083	97.7	0.853	Contact Map
2b3tA	1	0.9398	97.7	0.855	Contact Map
4dzrA	2	0.5564	97.6	0.855	Contact Map
3dh0A	1	0.6541	97.6	0.858	Contact Map
3v97A	1	0.8308	97.5	0.858	Contact Map
3a27A	1	0.718	97.5	0.858	Contact Map
1uwvA	1	0.891	97.5	0.859	Contact Map
4qdjA	1	0.7481	97.4	0.86	Contact Map
2yx1A	2	0.8008	97.4	0.861	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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