Q97X31 - SULSO - GREMLIN Contacts

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Q97X31 - Uncharacterized protein

UniProt:	Q97X31	Sequences: MRVIDSSSLVKFFSKEKGWEKVVEIISEGVMTLDLSIKEVANSLWKKILLGEMKEDVVIKILSDLLKREALLIVSQDEYLIEAFKIANRNKITVYDSLFIALAKSNNLELVTSDKKQYEVAIKEGVNTRLI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	131 (121)
Sequences:	462 (415)
Seq/√Len:	37.7

SULSO - Q97X31 Q97XF4 Q97X41

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
6_S	99_F	4.387	1.00
32_T	36_S	3.778	1.00
82_E	104_K	3.565	1.00
8_S	22_V	2.894	1.00
47_K	52_E	2.804	1.00
31_M	106_N	2.781	1.00
92_I	97_S	2.551	1.00
101_A	105_S	2.364	1.00
10_V	43_S	2.359	1.00
9_L	36_S	2.347	1.00
14_S	47_K	2.259	0.99
9_L	12_F	2.181	0.99
112_T	118_Y	2.166	0.99
37_I	73_I	2.129	0.99
48_I	88_N	2.114	0.99
6_S	43_S	2.012	0.99
41_A	94_V	1.948	0.98
11_K	16_E	1.933	0.98
54_K	57_V	1.896	0.98
12_F	22_V	1.827	0.98
11_K	113_S	1.736	0.97
83_A	98_L	1.645	0.95
32_T	71_L	1.624	0.95
12_F	26_I	1.569	0.94
79_Y	83_A	1.549	0.94
58_V	84_F	1.533	0.93
38_K	98_L	1.519	0.93
99_F	102_L	1.504	0.93
16_E	19_W	1.460	0.91
86_I	97_S	1.424	0.90
32_T	73_I	1.408	0.90
6_S	9_L	1.390	0.89
34_D	75_S	1.363	0.88
48_I	58_V	1.317	0.86
40_V	43_S	1.286	0.85
40_V	65_L	1.280	0.85
31_M	74_V	1.277	0.85
82_E	85_K	1.256	0.84
6_S	10_V	1.255	0.84
33_L	69_E	1.239	0.83
16_E	52_E	1.187	0.80
82_E	101_A	1.169	0.79
62_L	87_A	1.155	0.78
71_L	97_S	1.143	0.77
93_T	97_S	1.127	0.76
115_K	119_E	1.119	0.76
13_F	61_I	1.112	0.75
21_K	24_E	1.065	0.72
84_F	91_K	1.055	0.71
45_W	49_L	1.054	0.71
100_I	121_A	1.020	0.69
4_I	30_V	1.015	0.68
69_E	92_I	1.013	0.68
59_I	62_L	1.012	0.68
74_V	101_A	1.004	0.68
36_S	71_L	1.002	0.67
17_K	52_E	0.990	0.67
2_R	12_F	0.988	0.66
101_A	104_K	0.982	0.66
74_V	102_L	0.974	0.65
90_N	93_T	0.961	0.64
87_A	110_L	0.959	0.64
8_S	12_F	0.957	0.64
66_L	84_F	0.937	0.62
46_K	52_E	0.932	0.62
21_K	51_G	0.921	0.61
44_L	49_L	0.918	0.61
22_V	111_V	0.907	0.60
58_V	103_A	0.893	0.58
76_Q	85_K	0.893	0.58
92_I	100_I	0.890	0.58
42_N	45_W	0.889	0.58
4_I	9_L	0.880	0.57
63_S	81_I	0.877	0.57
42_N	95_Y	0.869	0.56
71_L	92_I	0.869	0.56
16_E	47_K	0.855	0.55
32_T	65_L	0.842	0.54
8_S	31_M	0.834	0.53
93_T	116_K	0.831	0.53
22_V	106_N	0.824	0.52
9_L	99_F	0.813	0.51
35_L	100_I	0.811	0.51
3_V	102_L	0.803	0.50
25_I	62_L	0.802	0.50
86_I	101_A	0.801	0.50
34_D	76_Q	0.799	0.50
92_I	98_L	0.789	0.49
86_I	104_K	0.782	0.49
24_E	107_N	0.779	0.48
32_T	99_F	0.779	0.48
17_K	50_L	0.778	0.48
41_A	77_D	0.775	0.48
61_I	75_S	0.770	0.48
116_K	119_E	0.763	0.47
53_M	111_V	0.756	0.46
30_V	111_V	0.745	0.45
76_Q	84_F	0.744	0.45
10_V	40_V	0.743	0.45
45_W	84_F	0.741	0.45
24_E	56_D	0.730	0.44
54_K	63_S	0.726	0.44
46_K	50_L	0.724	0.44
33_L	99_F	0.717	0.43
64_D	94_V	0.706	0.42
90_N	97_S	0.703	0.42
40_V	90_N	0.701	0.41
45_W	93_T	0.697	0.41
35_L	66_L	0.694	0.41
14_S	53_M	0.693	0.41
29_G	54_K	0.684	0.40
9_L	32_T	0.682	0.40
39_E	95_Y	0.678	0.40
60_K	82_E	0.675	0.39
13_F	116_K	0.666	0.39
16_E	97_S	0.663	0.38
7_S	89_R	0.661	0.38
71_L	120_V	0.656	0.38
26_I	56_D	0.652	0.37
113_S	118_Y	0.650	0.37
13_F	26_I	0.638	0.36
33_L	49_L	0.634	0.36
33_L	36_S	0.628	0.35
28_E	64_D	0.628	0.35
92_I	120_V	0.625	0.35
110_L	121_A	0.621	0.35
22_V	28_E	0.614	0.34
10_V	14_S	0.613	0.34
20_E	24_E	0.608	0.34
35_L	51_G	0.606	0.34
6_S	68_R	0.604	0.33
36_S	99_F	0.602	0.33
19_W	22_V	0.600	0.33
68_R	84_F	0.598	0.33
44_L	70_A	0.592	0.32
39_E	42_N	0.591	0.32
119_E	122_I	0.591	0.32
117_Q	121_A	0.590	0.32
56_D	74_V	0.587	0.32
72_L	116_K	0.586	0.32
32_T	69_E	0.580	0.32
29_G	72_L	0.574	0.31
56_D	78_E	0.572	0.31
55_E	89_R	0.572	0.31
7_S	119_E	0.571	0.31
20_E	59_I	0.568	0.31
37_I	41_A	0.564	0.30
20_E	107_N	0.564	0.30
13_F	21_K	0.561	0.30
91_K	115_K	0.557	0.30
25_I	51_G	0.554	0.30
8_S	113_S	0.552	0.29
83_A	92_I	0.547	0.29
14_S	117_Q	0.544	0.29
33_L	117_Q	0.543	0.29
79_Y	101_A	0.537	0.28
16_E	50_L	0.536	0.28
9_L	69_E	0.536	0.28
24_E	28_E	0.534	0.28
29_G	41_A	0.532	0.28
4_I	72_L	0.531	0.28
74_V	78_E	0.530	0.28
36_S	69_E	0.530	0.28
56_D	61_I	0.529	0.28
11_K	22_V	0.528	0.28
34_D	119_E	0.528	0.28
33_L	70_A	0.527	0.28
4_I	8_S	0.524	0.27
38_K	41_A	0.522	0.27
4_I	100_I	0.522	0.27
13_F	118_Y	0.521	0.27
38_K	79_Y	0.518	0.27
44_L	58_V	0.516	0.27
24_E	55_E	0.516	0.27
4_I	26_I	0.508	0.26
86_I	100_I	0.508	0.26
43_S	51_G	0.504	0.26
34_D	53_M	0.501	0.26
8_S	21_K	0.501	0.26
27_S	71_L	0.501	0.26
38_K	109_E	0.500	0.26
110_L	113_S	0.500	0.26

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2fe1A	2	0.9542	99.7	0.529	Contact Map
1v8pA	4	0.9237	99.6	0.565	Contact Map
1w8iA	2	0.916	99.2	0.659	Contact Map
4chgA	2	0.9237	99	0.686	Contact Map
2h1cA	2	0.9466	99	0.689	Contact Map
3tndA	3	0.9084	98.9	0.702	Contact Map
3ix7A	2	0.8855	98.9	0.708	Contact Map
3zvkA	3	0.9084	98.8	0.709	Contact Map
3h87A	3	0.9084	98.6	0.732	Contact Map
1o4wA	2	0.8397	98.5	0.739	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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